BAC Information

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BAC

Clone NameB6Ng01-316O03
Chromosome15 (Build37)
Map Location 13,499,419 - 13,612,571
singlet/doubletdoublet
Overlap genenone
Upstream genePdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
Downstream geneLOC666708, LOC674819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316O03.bB6Ng01-316O03.g
ACCGA107168GA107169
length8791,110
definitionB6Ng01-316O03.b B6Ng01-316O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,611,693 - 13,612,571)(13,499,419 - 13,500,536)
sequence
gaattcctattgatatgatgttaatttatagcaaagagaaaacattatat
aatatattcatcaaaaagtatcattctttttatgggttggcactcccaga
tataaattccatcttgttttttactttgaattttagttctttttccatca
tttagcgatgcaggaagactagaaaaagttggtaaattagaagcatgaaa
aatgagcttaacactgctgagataaaaaatttgtaaagatcccctgagtg
gtatgatgtagcatacatggctatctttctgttcattgatggttatcatt
cctttcctttgagatcttggacaccaattttcattaacctgtaataggag
aaactcataatttctagaagtaaaacatgcatttctcttaaaagtgaagt
tctcagatattttctctctatcttgaccattttgacatttcagaaagtgg
tcagaatttgtggcacaagtgaattctgctttcatgagaacatttcagct
caggtcttcaatttggtcattcattcctccatattccaggttaaatgttt
gtctaatatacatggagacagaaatatggaaggtccaactgagtttcaat
gtttctgtcttttctggttgctataacaataagagttaaaacttcccaga
tgtttatgtgtcaggattaaaaccaacagttccttgagttctttgtacat
caaggattaagcaacatgatttgacccttatttcgcttgtttttttggga
tgacaaattatctggaccaatgttgtccagagaaaaaaatttaatcatat
agcataggtaactagtggaccatgcatagatagatacagaaagatagatg
ataggtaggtaggtagatagatagataga
gaattcaaacaaaacaattgagatagaatcttgtcccttgcttgtcacag
aaaagaagccaggaaggaaggaagtcaggagcctggattaggtacttatt
taacctgcataggaattttcttcccagcccatttccaacattcacataat
gcaagagagtgactctgtctagttcgaggaagaggaaggaatgatgctcc
catactgaggcagttttttgtacaactgagagggcttggggtaagataag
gcagaagaaggtatacaaacaaagtatggaagcatatgctctcctgtgtg
ctgttgagaaataaacagatttgtaacatagggcagagatgagtcacatt
gggaggtatgtttacggccaggaaaaaatcaagcctgtaatgccaggaaa
gggatttgaattggtttctaggcagaggaatggctgaaaactttggacat
tgatgtgtgtaaagattagctagctggcagtcatctctgagctgaaatac
agcaagagggagaagccacaagaccaattaggataccttttattcacaga
catgacactgtcttttagctcttcaatgactgattttaatagatgtttaa
taaatatttatgtaatgaaagagtaaactaattaaatatgagcttctcga
atcaggagataaatttaaatcgaactcctctaatgctctacatattgtgt
taactgatgtgacagcttttctgaatatttcctgtcacatggagaattca
gcctacattaaggcagcctatttgattggtgtagtgacactcttctaata
ctacgaaagattcgaaagattttacttataatgagttggaagaaaagtta
attaacactgtcctctttctcctgcctgtaatgatcatgtgcccatctat
gtttcaggcctgtagaaaaaatttaaaccagcaacatggctgctctggca
agaaatagtatccaaagaccttctagtcttgtgatctggttggaatgcag
acatgctgtagtatacacttttaatccaaacaataacagtaagtagtttt
aggaggagcagcatgtttgatccacctgaggggcagaccaaatgaatgat
tcaaagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13611693_13612571
seq2: B6Ng01-316O03.b_45_923 (reverse)

seq1  TCTATCTATCTATCTACCTACCTACCTATCATCTATCTTTCTGTATCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTACCTACCTACCTATCATCTATCTTTCTGTATCTAT  50

seq1  CTATGCATGGTCCACTAGTTACCTATGCTATATGATTAAATTTTTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCATGGTCCACTAGTTACCTATGCTATATGATTAAATTTTTTTCTC  100

seq1  TGGACAACATTGGTCCAGATAATTTGTCATCCCAAAAAAACAAGCGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAACATTGGTCCAGATAATTTGTCATCCCAAAAAAACAAGCGAAAT  150

seq1  AAGGGTCAAATCATGTTGCTTAATCCTTGATGTACAAAGAACTCAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCAAATCATGTTGCTTAATCCTTGATGTACAAAGAACTCAAGGAA  200

seq1  CTGTTGGTTTTAATCCTGACACATAAACATCTGGGAAGTTTTAACTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTTTTAATCCTGACACATAAACATCTGGGAAGTTTTAACTCTTA  250

seq1  TTGTTATAGCAACCAGAAAAGACAGAAACATTGAAACTCAGTTGGACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATAGCAACCAGAAAAGACAGAAACATTGAAACTCAGTTGGACCTT  300

seq1  CCATATTTCTGTCTCCATGTATATTAGACAAACATTTAACCTGGAATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTCTGTCTCCATGTATATTAGACAAACATTTAACCTGGAATATG  350

seq1  GAGGAATGAATGACCAAATTGAAGACCTGAGCTGAAATGTTCTCATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGAATGACCAAATTGAAGACCTGAGCTGAAATGTTCTCATGAAA  400

seq1  GCAGAATTCACTTGTGCCACAAATTCTGACCACTTTCTGAAATGTCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTCACTTGTGCCACAAATTCTGACCACTTTCTGAAATGTCAAAA  450

seq1  TGGTCAAGATAGAGAGAAAATATCTGAGAACTTCACTTTTAAGAGAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGATAGAGAGAAAATATCTGAGAACTTCACTTTTAAGAGAAATG  500

seq1  CATGTTTTACTTCTAGAAATTATGAGTTTCTCCTATTACAGGTTAATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTACTTCTAGAAATTATGAGTTTCTCCTATTACAGGTTAATGAA  550

seq1  AATTGGTGTCCAAGATCTCAAAGGAAAGGAATGATAACCATCAATGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTGTCCAAGATCTCAAAGGAAAGGAATGATAACCATCAATGAACA  600

seq1  GAAAGATAGCCATGTATGCTACATCATACCACTCAGGGGATCTTTACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATAGCCATGTATGCTACATCATACCACTCAGGGGATCTTTACAAA  650

seq1  TTTTTTATCTCAGCAGTGTTAAGCTCATTTTTCATGCTTCTAATTTACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATCTCAGCAGTGTTAAGCTCATTTTTCATGCTTCTAATTTACCA  700

seq1  ACTTTTTCTAGTCTTCCTGCATCGCTAAATGATGGAAAAAGAACTAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTAGTCTTCCTGCATCGCTAAATGATGGAAAAAGAACTAAAAT  750

seq1  TCAAAGTAAAAAACAAGATGGAATTTATATCTGGGAGTGCCAACCCATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTAAAAAACAAGATGGAATTTATATCTGGGAGTGCCAACCCATAA  800

seq1  AAAGAATGATACTTTTTGATGAATATATTATATAATGTTTTCTCTTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGATACTTTTTGATGAATATATTATATAATGTTTTCTCTTTGCT  850

seq1  ATAAATTAACATCATATCAATAGGAATTC  879
      |||||||||||||||||||||||||||||
seq2  ATAAATTAACATCATATCAATAGGAATTC  879

seq1: chr15_13499419_13500536
seq2: B6Ng01-316O03.g_67_1176

seq1  GAATTCAAACAAAACAATTGAGATAGAATCTTGTCCCTTGCTTGTCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAAAACAATTGAGATAGAATCTTGTCCCTTGCTTGTCACAG  50

seq1  AAAAGAAGCCAGGAAGGAAGGAAGTCAGGAGCCTGGATTAGGTACTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGCCAGGAAGGAAGGAAGTCAGGAGCCTGGATTAGGTACTTATT  100

seq1  TAACCTGCATAGGAATTTTCTTCCCAGCCCATTTCCAACATTCACATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGCATAGGAATTTTCTTCCCAGCCCATTTCCAACATTCACATAAT  150

seq1  GCAAGAGAGTGACTCTGTCTAGTTCGAGGAAGAGGAAGGAATGATGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGAGTGACTCTGTCTAGTTCGAGGAAGAGGAAGGAATGATGCTCC  200

seq1  CATACTGAGGCAGTTTTTTGTACAACTGAGAGGGCTTGGGGTAAGATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGAGGCAGTTTTTTGTACAACTGAGAGGGCTTGGGGTAAGATAAG  250

seq1  GCAGAAGAAGGTATACAAACAAAGTATGGAAGCATATGCTCTCCTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAAGGTATACAAACAAAGTATGGAAGCATATGCTCTCCTGTGTG  300

seq1  CTGTTGAGAAATAAACAGATTTGTAACATAGGGCAGAGATGAGTCACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGAAATAAACAGATTTGTAACATAGGGCAGAGATGAGTCACATT  350

seq1  GGGAGGTATGTTTACGGCCAGGAAAAAATCAAGCCTGTAATGCCAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTATGTTTACGGCCAGGAAAAAATCAAGCCTGTAATGCCAGGAAA  400

seq1  GGGATTTGAATTGGTTTCTAGGCAGAGGAATGGCTGAAAACTTTGGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGAATTGGTTTCTAGGCAGAGGAATGGCTGAAAACTTTGGACAT  450

seq1  TGATGTGTGTAAAGATTAGCTAGCTGGCAGTCATCTCTGAGCTGAAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGTGTAAAGATTAGCTAGCTGGCAGTCATCTCTGAGCTGAAATAC  500

seq1  AGCAAGAGGGAGAAGCCACAAGACCAATTAGGATACCTTTTATTCACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGGGAGAAGCCACAAGACCAATTAGGATACCTTTTATTCACAGA  550

seq1  CATGACACTGTCTTTTAGCTCTTCAATGACTGATTTTAATAGATGTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACTGTCTTTTAGCTCTTCAATGACTGATTTTAATAGATGTTTAA  600

seq1  TAAATATTTATGTAATGAAAGAGTAAACTAATTAAATATGAGCTTCTCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTATGTAATGAAAGAGTAAACTAATTAAATATGAGCTTCTCGA  650

seq1  ATCAGGAGATAAATTTAAATCGAACTCCTCTAATGCTCTACATATTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAGATAAATTTAAATCGAACTCCTCTAATGCTCTACATATTGTGT  700

seq1  TAACTGATGTGACAGCTTTTCTGAATATTTCCTGTCACATGGAGAATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGATGTGACAGCTTTTCTGAATATTTCCTGTCACATGGAGAATTCA  750

seq1  GCCTACATTAAGGCAGCCTATTTGATTGGTGTAGTGACACTCTTCTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACATTAAGGCAGCCTATTTGATTGGTGTAGTGACACTCTTCTAATA  800

seq1  CTACGAAAGATTCGAAAGATTTTACTTATAATGAGTTGGAAGAAAAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGAAAGATTCGAAAGATTTTACTTATAATGAGTTGGAAGAAAAGTTA  850

seq1  ATTAACACTGTCCTCTTTCTCCTGCCTGTAATGATCATGTGCCCATCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACACTGTCCTCTTTCTCCTGCCTGTAATGATCATGTGCCCATCTAT  900

seq1  GTTTCAGGCCTGTAGAAAAAATTTAAACCAGCAACATGGCTGCTCTGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGCCTGTAGAAAAAATTTAAACCAGCAACATGGCTGCTCTGGCA  950

seq1  AGAAATAGTATCCAAAGACCTTCTAGGTCTTTGTGATCTGGTTGGAATGC  1000
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  AGAAATAGTATCCAAAGACCTTCTA-GTC-TTGTGATCTGGTTGGAATGC  998

seq1  AGACATGCTGTTAGTATACACCTTTAATCCCAAACAATAACAGTAAGGTT  1050
      |||||||||| |||||||||| |||||| ||||||||||||||||||  |
seq2  AGACATGCTG-TAGTATACACTTTTAAT-CCAAACAATAACAGTAAG--T  1044

seq1  AGTTTTTAGGAGGAAGCAGCCATGTTTGATCCAACTGAGGGGCAGACAAA  1100
      || |||||||||| ||||| ||||||||||||| ||||||||||||| ||
seq2  AG-TTTTAGGAGG-AGCAG-CATGTTTGATCCACCTGAGGGGCAGACCAA  1091

seq1  ATG-ATGAATCAAAGAAAT  1118
      ||| |||| ||||||||||
seq2  ATGAATGATTCAAAGAAAT  1110