BAC Information

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BAC

Clone NameB6Ng01-317D01
Chromosome15 (Build37)
Map Location 28,982,729 - 29,119,056
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317D01.bB6Ng01-317D01.g
ACCGA107398GA107399
length1,1551,003
definitionB6Ng01-317D01.b B6Ng01-317D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,982,729 - 28,983,884)(29,118,087 - 29,119,056)
sequence
gaattcagtgtcctcttgcataaattaaagggtaaaagaattaaatgaat
ctagaaaaatggcacaaaatgagaaactcatgagcagcatgaggaatttg
caaatgaatatttgaaggactaactgatttgaagaaaaaaatatcattta
atgtgccaacttcctttaatgaaagtaacatttttgattcctccacagat
atgggatttgactctggctctctgcttttgggagtgttattcaatcgaga
tccactaatgataattttatttatttatttatttatttttattttgtagc
acaaagacagcatagggatgcacaagatacaagatgcgaggacacaggtg
tgctgttctatgcagaaggtaggacatgataaggacggtcttattcatcc
agagcaacactttccccatgaaagctttcgggatgaattcgccatgatta
aaaatttatgagtaaagtcactatgcgtatgaatggttcaacatggaaaa
gtgaccctgcattaactcaggagcagactctcagatctatcttccttttg
tcctggaatgttttcatgtccaggtctctcatcacacagctcctttccta
gaagctcatcatctaacagtgcagaattatttcctgtcgcccagaatgtg
cctttcatgccttctaaactttctatgtgaggttccctttgatgaaaaaa
atctgtgagctcctccatcttgacaaccctgagaaacttctacctttacc
cacttctgtatctttatgtgtatgacacctagtaccatgactgaggtgta
ggaaacctttaaaactttatcagaaagagtggagaaattcatctgttgct
ttgctatctatacatgtatatatatatatatctacatatatatgtagata
tatatatatacacacaaatacacacacatacatgtatatatatgtatata
cagtgtgtatatatatatatatatattgctatgtatattgcatatatggc
tataatgtaatatatagattatatgtttattactagttctgagaactttg
cacaagtgttttgaatcacatgcatcgcctccccttaagtccatccattt
aatccattcccattcgattgttgcgtgtcatagagtttaggaatgttgcc
tgcca

gaattctcccaggatctttcctctttcattctctttgggagaagaggaaa
gatgagctaacctctcatgatattgaatctttggccataaggtggcacat
aaaagtcacattctttatgcatggtaataccatgcaacagattgttctct
ttgtctcttctaggtatagaaggcatcaagtatatttcctcattgttttt
cctttagggtatttttcatgttatagaaagttgatttaataacaatatga
acatctggtacacacacctttaatcccagcaattgggagggaaaggcgag
cagatttctgagttcaaagccagcctggtctacagagtgagtttcaggac
aggcagggctacacagagaaaccctgtctctaaaaacaaaaagaaacaaa
caaaacccccataaacattgtttataaatgtacctcttttattttatttc
aattggatcagtttttgtttcacaaaattttgaattattctgctagcttc
ttgagggcttgatactgtatgaatattaatcatttatgcttatctctagc
aacacatttaatattaaaatctatttttctgatataactaccacctacat
ttattttgtcagattgcattgtattatttttaatccacatactctgcatt
gtttaaacaaaattgtatttctatctctgataaaatgtaaatttttaaat
tattattttaaatccaatgacatcttttaaccagctaggtggttttgcca
tttctatgatttttaacttaaaattattgtttatatccataaggtaggta
ttgtatctactgttttgacatacatcttattttgtgaattttctactact
ctttattttccctgtttccttattatacttactagttatattttaattta
agtagttgctctgggatttaaaatgtgcatcttagcttatgaaatattag
taagatttcttacatgtacttttgtataaaaagtagacattttactctta
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28982729_28983884
seq2: B6Ng01-317D01.b_45_1199

seq1  GAATTCAGTGTCCTCTTGCATAAATTAAAGGGTAAAAGAATTAAATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTCCTCTTGCATAAATTAAAGGGTAAAAGAATTAAATGAAT  50

seq1  CTAGAAAAATGGCACAAAATGAGAAACTCATGAGCAGCATGAGGAATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAATGGCACAAAATGAGAAACTCATGAGCAGCATGAGGAATTTG  100

seq1  CAAATGAATATTTGAAGGACTAACTGATTTGAAGAAAAAAATATCATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAATATTTGAAGGACTAACTGATTTGAAGAAAAAAATATCATTTA  150

seq1  ATGTGCCAACTTCCTTTAATGAAAGTAACATTTTTGATTCCTCCACAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCAACTTCCTTTAATGAAAGTAACATTTTTGATTCCTCCACAGAT  200

seq1  ATGGGATTTGACTCTGGCTCTCTGCTTTTGGGAGTGTTATTCAATCGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTTGACTCTGGCTCTCTGCTTTTGGGAGTGTTATTCAATCGAGA  250

seq1  TCCACTAATGATAATTTTATTTATTTATTTATTTATTTTTATTTTGTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAATGATAATTTTATTTATTTATTTATTTATTTTTATTTTGTAGC  300

seq1  ACAAAGACAGCATAGGGATGCACAAGATACAAGATGCGAGGACACAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACAGCATAGGGATGCACAAGATACAAGATGCGAGGACACAGGTG  350

seq1  TGCTGTTCTATGCAGAAGGTAGGACATGATAAGGACGGTCTTATTCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCTATGCAGAAGGTAGGACATGATAAGGACGGTCTTATTCATCC  400

seq1  AGAGCAACACTTTCCCCATGAAAGCTTTCGGGATGAATTCGCCATGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAACACTTTCCCCATGAAAGCTTTCGGGATGAATTCGCCATGATTA  450

seq1  AAAATTTATGAGTAAAGTCACTATGCGTATGAATGGTTCAACATGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATGAGTAAAGTCACTATGCGTATGAATGGTTCAACATGGAAAA  500

seq1  GTGACCCTGCATTAACTCAGGAGCAGACTCTCAGATCTATCTTCCTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTGCATTAACTCAGGAGCAGACTCTCAGATCTATCTTCCTTTTG  550

seq1  TCCTGGAATGTTTTCATGTCCAGGTCTCTCATCACACAGCTCCTTTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAATGTTTTCATGTCCAGGTCTCTCATCACACAGCTCCTTTCCTA  600

seq1  GAAGCTCATCATCTAACAGTGCAGAATTATTTCCTGTCGCCCAGAATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCATCATCTAACAGTGCAGAATTATTTCCTGTCGCCCAGAATGTG  650

seq1  CCTTTCATGCCTTCTAAACTTTCTATGTGAGGTTCCCTTTGATGAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATGCCTTCTAAACTTTCTATGTGAGGTTCCCTTTGATGAAAAAA  700

seq1  ATCTGTGAGCTCCTCCATCTTGACAACCCTGAGAAACTTCTACCTTTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGAGCTCCTCCATCTTGACAACCCTGAGAAACTTCTACCTTTACC  750

seq1  CACTTCTGTATCTTTATGTGTATGACACCTAGTACCATGACTGAGGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGTATCTTTATGTGTATGACACCTAGTACCATGACTGAGGTGTA  800

seq1  GGAAACC-TTAAAACTTTATCAGAAAGAGTGGAGAAATTCATCTGTTGCT  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTTTAAAACTTTATCAGAAAGAGTGGAGAAATTCATCTGTTGCT  850

seq1  TTGCTATCTATACATGTATATATATATATATCTACATATATATGTAGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATCTATACATGTATATATATATATATCTACATATATATGTAGATA  900

seq1  TATATATATACACACAAATACACACACATACATGTATATATATGTATATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATACACACAAATACACACACATACATGTATATATATGTATATA  950

seq1  CAGTGTGTATATATATATATATATATTGCTATGTATATTGCATATATGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTATATATATATATATATATTGCTATGTATATTGCATATATGGC  1000

seq1  TATAATGTAATATATAGA-TATATGTTTATTTACTAGTTTCTTGAGAACT  1048
      |||||||||||||||||| |||||||||| |||||||||   ||||||||
seq2  TATAATGTAATATATAGATTATATGTTTA-TTACTAGTT--CTGAGAACT  1047

seq1  TTGCACAAGGTGTTTTG-ATCACATGCATCG-CTCCCC-TAGTTCCATCT  1095
      |||||||| |||||||| ||||||||||||| |||||| ||  |||||| 
seq2  TTGCACAA-GTGTTTTGAATCACATGCATCGCCTCCCCTTAAGTCCATCC  1096

seq1  ATTTTAATCCCATCCCATCCAATTTGTGC-TGTCCATAGAGTTTAGGATG  1144
      | ||||||||  |||||| | |||  ||| ||| ||||||||||||||  
seq2  A-TTTAATCCATTCCCATTCGATTGTTGCGTGT-CATAGAGTTTAGGA-A  1143

seq1  TGTGTCCTGCCA  1156
      |||  |||||||
seq2  TGTTGCCTGCCA  1155


seq1: chr15_29118087_29119056
seq2: B6Ng01-317D01.g_67_1037 (reverse)

seq1  AAGTACATGT-AGAAATCTTTACTAATATTTCATAAGCTAAGATGCACAT  49
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  AAGTACATGTAAGAAATC-TTACTAATATTTCATAAGCTAAGATGCACAT  49

seq1  TTTAAATCCCAGAGCAACTACTTAAATTAAAATATAACTAGTAAGTATAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCCCAGAGCAACTACTTAAATTAAAATATAACTAGTAAGTATAA  99

seq1  TAAGGAAACAGGGAAAATAAAGAGTAGTAG-AAATTCACAAAATAAGATG  148
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAAGGAAACAGGGAAAATAAAGAGTAGTAGAAAATTCACAAAATAAGATG  149

seq1  TATGTCAAAACAGTAGATACAATACCTACCTTATGGATATAAACAATAAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAAAACAGTAGATACAATACCTACCTTATGGATATAAACAATAAT  199

seq1  TTTAAGTTAAAAATCATAGAAATGGCAAAACCACCTAGCTGGTTAAAAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTAAAAATCATAGAAATGGCAAAACCACCTAGCTGGTTAAAAGA  249

seq1  TGTCATTGGATTTAAAATAATAATTTAAAAATTTACATTTTATCAGAGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGGATTTAAAATAATAATTTAAAAATTTACATTTTATCAGAGAT  299

seq1  AGAAATACAATTTTGTTTAAACAATGCAGAGTATGTGGATTAAAAATAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACAATTTTGTTTAAACAATGCAGAGTATGTGGATTAAAAATAAT  349

seq1  ACAATGCAATCTGACAAAATAAATGTAGGTGGTAGTTATATCAGAAAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAATCTGACAAAATAAATGTAGGTGGTAGTTATATCAGAAAAAT  399

seq1  AGATTTTAATATTAAATGTGTTGCTAGAGATAAGCATAAATGATTAATAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAATATTAAATGTGTTGCTAGAGATAAGCATAAATGATTAATAT  449

seq1  TCATACAGTATCAAGCCCTCAAGAAGCTAGCAGAATAATTCAAAATTTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAGTATCAAGCCCTCAAGAAGCTAGCAGAATAATTCAAAATTTTG  499

seq1  TGAAACAAAAACTGATCCAATTGAAATAAAATAAAAGAGGTACATTTATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAAAAACTGATCCAATTGAAATAAAATAAAAGAGGTACATTTATA  549

seq1  AACAATGTTTATGGGGGTTTTGTTTGTTTCTTTTTGTTTTTAGAGACAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTTTATGGGGGTTTTGTTTGTTTCTTTTTGTTTTTAGAGACAGG  599

seq1  GTTTCTCTGTGTAGCCCTGCCTGTCCTGAAACTCACTCTGTAGACCAGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTGTAGCCCTGCCTGTCCTGAAACTCACTCTGTAGACCAGGC  649

seq1  TGGCTTTGAACTCAGAAATCTGCTCGCCTTTCCCTCCCAATTGCTGGGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTGAACTCAGAAATCTGCTCGCCTTTCCCTCCCAATTGCTGGGAT  699

seq1  TAAAGGTGTGTGTACCAGATGTTCATATTGTTATTAAATCAACTTTCTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGTGTGTACCAGATGTTCATATTGTTATTAAATCAACTTTCTAT  749

seq1  AACATGAAAAATACCCTAAAGGAAAAACAATGAGGAAATATACTTGATGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAAAATACCCTAAAGGAAAAACAATGAGGAAATATACTTGATGC  799

seq1  CTTCTATACCTAGAAGAGACAAAGAGAACAATCTGTTGCATGGTATTACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATACCTAGAAGAGACAAAGAGAACAATCTGTTGCATGGTATTACC  849

seq1  ATGCATAAAGAATGTGACTTTTATGTGCCACCTTATGGCCAAAGATTCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAAAGAATGTGACTTTTATGTGCCACCTTATGGCCAAAGATTCAA  899

seq1  TATCATGAGAGGTTAGCTCATCTTTCCTCTTCTCCCAAAGAGAATGAAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGAGAGGTTAGCTCATCTTTCCTCTTCTCCCAAAGAGAATGAAAG  949

seq1  AGGAAAGATCCTGGGAGAATTC  970
      ||||||||||||||||||||||
seq2  AGGAAAGATCCTGGGAGAATTC  971


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