BAC Information

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BAC

Clone NameB6Ng01-318B08
Chromosome15 (Build37)
Map Location 17,711,603 - 17,862,513
singlet/doubletdoublet
Overlap geneLOC100040162
Upstream geneCdh9
Downstream geneLOC666835, LOC666839, Cdh10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318B08.bB6Ng01-318B08.g
ACCGA108061GA108062
length1,0921,126
definitionB6Ng01-318B08.b B6Ng01-318B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,861,414 - 17,862,513)(17,711,603 - 17,712,743)
sequence
gaattcatccctcagaggacccgtccctcatattactctaattcatagat
atgaagaatgaacccacacttatagtactttgctctctgtctagtgaaaa
taaattgttgtagaagaaaaaaaaatgttatttcctttcatcacatttta
tgagtgtgaacaatcttctagtgagttcagatgagaggaaaatgttcacc
agttccaaagtaaagaagtgtctaatgataaacaactgctaatgaaaaaa
ctatgtttggaaaacatttgcaatagtgtgacatcatcacagcattgata
actcactcctctatacctttatgtacccctgggaatttctttaatcacct
tatacataacctgttatcctatcctaactacaacactgcagctagggata
tttattattgacatttcacagaggcaggaattcatttataaggtcctgcc
attgtctcaattacagttaatagatgacatagagactgtaaaaaagcatg
cctgttctcttaagctgaactgctttggtaagtagtttaagtggaatcat
cagttcactgagattgctgttgtagattttaataataataaacatataaa
gatgcatcaatgttctgcttctgatttcataaatttaagatgaattcatc
attctgtaatcgtttaaagagtaattttataatttcaatgacactaagaa
catactactcataatattggcaaacataaatataatctccttctaattct
tcattataatatattttaatataacaatgttttaatataattaacctggc
ttccaatccaagggatagttcacaaagaacgattttcctcttgaaaacat
tatcaacatattaatatttcaaaatgcattcaaaaattaaaaataattta
atctcctcttgggtgtgcctgaaatttaaaaaatatttttttttttcctt
ttgttaaaacaggttctaactataattgcattcttgctttaatttatgac
atcctctgacatgtgcacacacccctatactttcaattctgtttgtctta
caggaacactttatctgtctctaaatcatattaaaattatac

gaattcttcagtttttgatgttagtgaaaactggctctgctgggaaagca
gaagtgtctctataagctgcttgtcacacaaacgtgagtatgtgagttca
catctgcaaaacctacataacatggaaagcgttgtgacatgtggctacaa
aggcccagacaacaggcccaaattcacatacaggcatatacttggtactt
actgttctattagtgtagctaaatgggtgaacttcaggatcaatgagaga
atcttcaaaaagcaaggaagccagaaatgaaaacatctatcatttaagtt
tggctgctatatctatgtaaacaagcaaaaatatacactttacatgattt
tctgttcatcgttttatgctgtagatttttaaatatcagataactttata
tggcttttttgtttaacatatatgtttctttttaataattagcatagtaa
atattagtgtatacacaggtaggtgcatgcatgggcactgtgcaatttgt
atgtatataattgtccattcatgtgtataaaactgagtgtttgtatttgt
acatatttgtgttttctgagtatagatatagatctttgtgtgttcatatg
agtgtatgttttcatacactataatatgtatatattcatatatatgcatc
tgtgtttgtgttcatctttatatatgtgtgtttgtgtgtatatgtgcaac
ctacctgtgaattgtaaggaacagaacttatctattctatacattttaaa
atattgctccaattatttctctttcaaaagccttaaaaactgtgagagaa
ctttttatatttttaaaataattctccacaagcagaattggtattgattt
aattaccaaagtgatatattttattaaatttttattagaaattttcttta
ttttcatttcaataatatcccctttattgcttcccctctgaggactcccc
tatacccttcacatcccctgctcaccaacctatatctgagactaactctt
tgctgttttttatgtaaaatgtcactatttggattaacattatctgaaat
aagtcatatatgatagatttaatctagattttggtaattatatctcacat
attaggcaagtttctgtccaattaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17861414_17862513
seq2: B6Ng01-318B08.b_48_1139 (reverse)

seq1  GTATATATTTTAATATGATTTAGAGACAGATTAAAAGTGTTTCCTGTAAG  50
      ||||| |||||||||||||||||||||||||  |||||| ||||||||||
seq2  GTATA-ATTTTAATATGATTTAGAGACAGAT--AAAGTG-TTCCTGTAAG  46

seq1  ACAAACCAGAA-TGGAAGTATAGGGGTGTGTGCCACATGTCAGAAGGATT  99
      ||||| ||||| || ||||||||||||||||| |||||||||| |||| |
seq2  ACAAA-CAGAATTGAAAGTATAGGGGTGTGTG-CACATGTCAG-AGGA-T  92

seq1  GTCATAAATTTAAAGCAAGAATGCAATTTATAGTTAGAACCTGTTTTAAC  149
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  GTCATAAA-TTAAAGCAAGAATGCAA-TTATAGTTAGAACCTGTTTTAAC  140

seq1  AAAAGG--AAAAAAAAATATTTTTTAAATTTCAGGCACACCCAAGAGGAG  197
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAAAAAAAAATATTTTTTAAATTTCAGGCACACCCAAGAGGAG  190

seq1  ATTAAATTATTTTTAATTTTTGAATGCATTTTGAAATATTAATATGTTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTATTTTTAATTTTTGAATGCATTTTGAAATATTAATATGTTGA  240

seq1  TAATGTTTTCAAGAGGAAAATCGTTCTTTGTGAACTATCCCTTGGATTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTTCAAGAGGAAAATCGTTCTTTGTGAACTATCCCTTGGATTGG  290

seq1  AAGCCAGGTTAATTATATTAAAACATTGTTATATTAAAATATATTATAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGTTAATTATATTAAAACATTGTTATATTAAAATATATTATAAT  340

seq1  GAAGAATTTAGAAGGAGATTATATTTATGTTTGCCAATATTATGAGTAGT  397
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAA-TTAGAAGGAGATTATATTTATGTTTGCCAATATTATGAGTAGT  389

seq1  ATGTTCTTAGTGTCATTGAAATTATAAAATTACTCTTTAAACGATTACAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTAGTGTCATTGAAATTATAAAATTACTCTTTAAACGATTACAG  439

seq1  AATGATGAATTCATCTTAAATTTATGAAATCAGAAGCAGAACATTGATGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGAATTCATCTTAAATTTATGAAATCAGAAGCAGAACATTGATGC  489

seq1  ATCTTTATATGTTTATTATTATTAAAATCTACAACAGCAATCTCAGTGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATATGTTTATTATTATTAAAATCTACAACAGCAATCTCAGTGAA  539

seq1  CTGATGATTCCACTTAAACTACTTACCAAAGCAGTTCAGCTTAAGAGAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTCCACTTAAACTACTTACCAAAGCAGTTCAGCTTAAGAGAAC  589

seq1  AGGCATGCTTTTTTACAGTCTCTATGTCATCTATTAACTGTAATTGAGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCTTTTTTACAGTCTCTATGTCATCTATTAACTGTAATTGAGAC  639

seq1  AATGGCAGGACCTTATAAATGAATTCCTGCCTCTGTGAAATGTCAATAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGGACCTTATAAATGAATTCCTGCCTCTGTGAAATGTCAATAAT  689

seq1  AAATATCCCTAGCTGCAGTGTTGTAGTTAGGATAGGATAACAGGTTATGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCCTAGCTGCAGTGTTGTAGTTAGGATAGGATAACAGGTTATGT  739

seq1  ATAAGGTGATTAAAGAAATTCCCAGGGGTACATAAAGGTATAGAGGAGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTGATTAAAGAAATTCCCAGGGGTACATAAAGGTATAGAGGAGTG  789

seq1  AGTTATCAATGCTGTGATGATGTCACACTATTGCAAATGTTTTCCAAACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCAATGCTGTGATGATGTCACACTATTGCAAATGTTTTCCAAACA  839

seq1  TAGTTTTTTCATTAGCAGTTGTTTATCATTAGACACTTCTTTACTTTGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTTCATTAGCAGTTGTTTATCATTAGACACTTCTTTACTTTGGA  889

seq1  ACTGGTGAACATTTTCCTCTCATCTGAACTCACTAGAAGATTGTTCACAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGAACATTTTCCTCTCATCTGAACTCACTAGAAGATTGTTCACAC  939

seq1  TCATAAAATGTGATGAAAGGAAATAACATTTTTTTTTCTTCTACAACAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATGTGATGAAAGGAAATAACATTTTTTTTTCTTCTACAACAAT  989

seq1  TTATTTTCACTAGACAGAGAGCAAAGTACTATAAGTGTGGGTTCATTCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCACTAGACAGAGAGCAAAGTACTATAAGTGTGGGTTCATTCTT  1039

seq1  CATATCTATGAATTAGAGTAATATGAGGGACGGGTCCTCTGAGGGATGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTATGAATTAGAGTAATATGAGGGACGGGTCCTCTGAGGGATGAA  1089

seq1  TTC  1100
      |||
seq2  TTC  1092


seq1: chr15_17711603_17712743
seq2: B6Ng01-318B08.g_67_1192

seq1  GAATTCTTCAGTTTTTGATGTTAGTGAAAACTGGCTCTGCTGGGAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTTTTTGATGTTAGTGAAAACTGGCTCTGCTGGGAAAGCA  50

seq1  GAAGTGTCTCTATAAGCTGCTTGTCACACAAACGTGAGTATGTGAGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTCTCTATAAGCTGCTTGTCACACAAACGTGAGTATGTGAGTTCA  100

seq1  CATCTGCAAAACCTACATAACATGGAAAGCGTTGTGACATGTGGCTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCAAAACCTACATAACATGGAAAGCGTTGTGACATGTGGCTACAA  150

seq1  AGGCCCAGACAACAGGCCCAAATTCACATACAGGCATATACTTGGTACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGACAACAGGCCCAAATTCACATACAGGCATATACTTGGTACTT  200

seq1  ACTGTTCTATTAGTGTAGCTAAATGGGTGAACTTCAGGATCAATGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTATTAGTGTAGCTAAATGGGTGAACTTCAGGATCAATGAGAGA  250

seq1  ATCTTCAAAAAGCAAGGAAGCCAGAAATGAAAACATCTATCATTTAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAAAAAGCAAGGAAGCCAGAAATGAAAACATCTATCATTTAAGTT  300

seq1  TGGCTGCTATATCTATGTAAACAAGCAAAAATATACACTTTACATGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTATATCTATGTAAACAAGCAAAAATATACACTTTACATGATTT  350

seq1  TCTGTTCATCGTTTTATGCTGTAGATTTTTAAATATCAGATAACTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCATCGTTTTATGCTGTAGATTTTTAAATATCAGATAACTTTATA  400

seq1  TGGCTTTTTTGTTTAACATATATGTTTCTTTTTAATAATTAGCATAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTTTGTTTAACATATATGTTTCTTTTTAATAATTAGCATAGTAA  450

seq1  ATATTAGTGTATACACAGGTAGGTGCATGCATGGGCACTGTGCAATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTGTATACACAGGTAGGTGCATGCATGGGCACTGTGCAATTTGT  500

seq1  ATGTATATAATTGTCCATTCATGTGTATAAAACTGAGTGTTTGTATTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATAATTGTCCATTCATGTGTATAAAACTGAGTGTTTGTATTTGT  550

seq1  ACATATTTGTGTTTTCTGAGTATAGATATAGATCTTTGTGTGTTCATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTGTGTTTTCTGAGTATAGATATAGATCTTTGTGTGTTCATATG  600

seq1  AGTGTATGTTTTCATACACTATAATATGTATATATTCATATATATGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATGTTTTCATACACTATAATATGTATATATTCATATATATGCATC  650

seq1  TGTGTTTGTGTTCATCTTTATATATGTGTGTTTGTGTGTATATGTGCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTGTTCATCTTTATATATGTGTGTTTGTGTGTATATGTGCAAC  700

seq1  CTACCTGTGAATTGTAAGGAACAGAACTTATCTATTCTATACATTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGTGAATTGTAAGGAACAGAACTTATCTATTCTATACATTTTAAA  750

seq1  ATATTGCTCCAATTATTTCTCTTTCAAAAGCCTTAAAAACTGTGAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCTCCAATTATTTCTCTTTCAAAAGCCTTAAAAACTGTGAGAGAA  800

seq1  CTTTTTATATTTTTAAAATAATTCTCCACAAGCAGAATTGGTATTGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATATTTTTAAAATAATTCTCCACAAGCAGAATTGGTATTGATTT  850

seq1  AATTACCAAAGTGATATATTTTATTAAATTTTTATTAGAAATTTTCTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCAAAGTGATATATTTTATTAAATTTTTATTAGAAATTTTCTTTA  900

seq1  TTTTCATTTCAATAATATCCCCTTTATTGCTTTCCCCTCTGAAGACTCCC  950
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  TTTTCATTTCAATAATATCCCCTTTATTGC-TTCCCCTCTGAGGACTCCC  949

seq1  CTATACCCTTCACCATCCCCTGCTCACCAACCCTAATAT-TCTGAAGACT  999
      |||||||||||| |||||||||||||||||||    ||| |||| |||||
seq2  CTATACCCTTCA-CATCCCCTGCTCACCAACC----TATATCTG-AGACT  993

seq1  AACTCTTTGCTGTTTTTTTAATTGTTAAAAATGTTCACTATTT-GATAAA  1048
      ||||||||||||||||||    |||  |||||| ||||||||| ||| ||
seq2  AACTCTTTGCTGTTTTTT---ATGT--AAAATG-TCACTATTTGGATTAA  1037

seq1  CATTATCTGAAATTAAATTCATATTAATGATAGGATTTAATCTAGATTTT  1098
      |||||||||||||  || ||||||  |||||| |||||||||||||||||
seq2  CATTATCTGAAAT--AAGTCATAT--ATGATA-GATTTAATCTAGATTTT  1082

seq1  GTATAATTTATATCCTCAC-TATTAGGCAA-TTTCTG--CCATTAAG  1141
      |  ||| |||||| ||||| |||||||||| ||||||  | ||||||
seq2  G-GTAA-TTATAT-CTCACATATTAGGCAAGTTTCTGTCCAATTAAG  1126


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