BAC Information

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BAC

Clone NameB6Ng01-319J04
Chromosome15 (Build37)
Map Location 88,246,602 - 88,385,024
singlet/doubletdoublet
Overlap genenone
Upstream geneAW049604, LOC100042329, LOC100042340
Downstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319J04.bB6Ng01-319J04.g
ACCGA109167GA109168
length1691,135
definitionB6Ng01-319J04.b B6Ng01-319J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,384,857 - 88,385,024)(88,246,602 - 88,247,732)
sequence
ggaattcacattaggatataacagtcatgctgcctccctcctgagtctca
ccatgaactttttttgatgtgtctgtgtggtgtgtttgtgtgtgtgtgtt
tgtgtgtgtgtgtttgtgtgttagtgtttgtaagtaaacggcaaacatgt
tttcagggaactgaatagt
gaattcagtgtggtaagatatagctataatctcagcacttaggagaggtg
gaaggagttttgcaacaaggcaggctgagctatagtatgagactatgtct
cattaaaaagacaagtgggactgtgggaacaggaatgaacatccctacag
gtaatatggcccctcacagtaggtcaagactgacaagagtcagaacactc
tacagtaaacgaggctttggtaaataccctgagcatcctcagaggggtct
caggcagacagaatcctagacattcttgggcaagacacagggagggatcc
gcttggctgctgtcagtggaatacaaagcttcagcttaaaggcagaagca
ccttgaaatttggattttaaaatccatatagcacaggaaacttattgtcc
acttcctgggtcctataagcacacacacgtgcatgtgtgcacacacacac
atatgcgcacaccccaaatactttgtcacacagacttgtgtttggtgtgt
tcagtatctagggaggatgtgggtccattgtagccagctagtgctgaggg
cagtaagagaaacaaagatgtgtaaggtagtccctccaatcctctaggac
ttgaggccaacagagaaggattcagtctggacacacagttctcaaaggcc
agacccagggccatgatagtgtggtacagaaagaaaaggaatgcattaat
agagcagccaagattcctgcccatgcctcagttagcaaagccttttgatt
cacacaatgaggctagccacatgtttggtgcaaacatgtccacacgtcca
cacagggatacaaacacacacacacacacactaaattgtccagaaagagg
ctagagagtaccttctatcaaggggaccttgaatctccacccagcgccac
ctgacaggaatgcaagctggcaccacccacttaaggacgacctttccttt
ttgtttcttggattctttgttggggcagaaagaggacaacagagaactac
ttctgaaagggaaaaatgttgtaagcttcagagagtggaaagaaagacac
agtccctggcttctgatggagcaatgggcagctgcatcagatggactgaa
atgggaaagcctatacagactgggtcagtagacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_88384857_88385024
seq2: B6Ng01-319J04.b_48_215 (reverse)

seq1  ACTATACAGTTCCCTGAATACGTGTTTGCCCTCTACTTACAAACACAAAC  50
      ||||| |||||||||||| || |||||||| | ||||||||||||| |||
seq2  ACTATTCAGTTCCCTGAAAACATGTTTGCCGTTTACTTACAAACACTAAC  50

seq1  ACACAAACACACACACACAAACACACACACACAAACACACCACACAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACACACACACACAAACACACACACACAAACACACCACACAGACA  100

seq1  CATCAAAAAAAGTTCATGGTGAGACTCAGGAGGGAGGCAGCATGACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAAAAAGTTCATGGTGAGACTCAGGAGGGAGGCAGCATGACTGTT  150

seq1  ATATCCTAATGTGAATTC  168
      ||||||||||||||||||
seq2  ATATCCTAATGTGAATTC  168

seq1: chr15_88246602_88247732
seq2: B6Ng01-319J04.g_69_1203

seq1  GAATTCAGTGTGGTAAGATATAGCTATAATCTCAGCACTTAGGAGAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGGTAAGATATAGCTATAATCTCAGCACTTAGGAGAGGTG  50

seq1  GAAGGAGTTTTGCAACAAGGCAGGCTGAGCTATAGTATGAGACTATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTTTTGCAACAAGGCAGGCTGAGCTATAGTATGAGACTATGTCT  100

seq1  CATTAAAAAGACAAGTGGGACTGTGGGAACAGGAATGAACATCCCTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAAGACAAGTGGGACTGTGGGAACAGGAATGAACATCCCTACAG  150

seq1  GTAATATGGCCCCTCACAGTAGGTCAAGACTGACAAGAGTCAGAACACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGGCCCCTCACAGTAGGTCAAGACTGACAAGAGTCAGAACACTC  200

seq1  TACAGTAAACGAGGCTTTGGTAAATACCCTGAGCATCCTCAGAGGGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAAACGAGGCTTTGGTAAATACCCTGAGCATCCTCAGAGGGGTCT  250

seq1  CAGGCAGACAGAATCCTAGACATTCTTGGGCAAGACACAGGGAGGGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGACAGAATCCTAGACATTCTTGGGCAAGACACAGGGAGGGATCC  300

seq1  GCTTGGCTGCTGTCAGTGGAATACAAAGCTTCAGCTTAAAGGCAGAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCTGCTGTCAGTGGAATACAAAGCTTCAGCTTAAAGGCAGAAGCA  350

seq1  CCTTGAAATTTGGATTTTAAAATCCATATAGCACAGGAAACTTATTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAATTTGGATTTTAAAATCCATATAGCACAGGAAACTTATTGTCC  400

seq1  ACTTCCTGGGTCCTATAAGCACACACACGTGCATGTGTGCACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGGGTCCTATAAGCACACACACGTGCATGTGTGCACACACACAC  450

seq1  ATATGCGCACACCCCAAATACTTTGTCACACAGACTTGTGTTTGGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCGCACACCCCAAATACTTTGTCACACAGACTTGTGTTTGGTGTGT  500

seq1  TCAGTATCTAGGGAGGATGTGGGTCCATTGTAGCCAGCTAGTGCTGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATCTAGGGAGGATGTGGGTCCATTGTAGCCAGCTAGTGCTGAGGG  550

seq1  CAGTAAGAGAAACAAAGATGTGTAAGGTAGTCCCTCCAATCCTCTAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGAGAAACAAAGATGTGTAAGGTAGTCCCTCCAATCCTCTAGGAC  600

seq1  TTGAGGCCAACAGAGAAGGATTCAGTCTGGACACACAGTTCTCAAAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAACAGAGAAGGATTCAGTCTGGACACACAGTTCTCAAAGGCC  650

seq1  AGACCCAGGGCCATGATAGTGTGGTACAGAAAGAAAAGGAATGCATTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGGGCCATGATAGTGTGGTACAGAAAGAAAAGGAATGCATTAAT  700

seq1  AGAGCAGCCAAGATTCCTGCCCATGCCTCAGTTAGCAAAGCCTTTTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCCAAGATTCCTGCCCATGCCTCAGTTAGCAAAGCCTTTTGATT  750

seq1  CACACAATGAGGCTAGCCACATG-TTGGTGCAAACATGTCCACACGTCCA  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACACAATGAGGCTAGCCACATGTTTGGTGCAAACATGTCCACACGTCCA  800

seq1  CACAGGGATACAAACACACACACACACACACTAAATTGTCCAGAAAGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGATACAAACACACACACACACACACTAAATTGTCCAGAAAGAGG  850

seq1  CTAGAGAGTACC-TCTATCAAGGGGACCTTG-ATCTCCACCCAGCGCCAC  897
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  CTAGAGAGTACCTTCTATCAAGGGGACCTTGAATCTCCACCCAGCGCCAC  900

seq1  CTGACAGGAATGCAAGCTGGCACCAACCCACTTAAGGACGACCTT--CCT  945
      |||||||||||||||||||||||| ||||||||||||||||||||  | |
seq2  CTGACAGGAATGCAAGCTGGCACC-ACCCACTTAAGGACGACCTTTCCTT  949

seq1  TTTGTTTC-TGGATTCTT--GTGGGGCAGAAAAGAGGACACAGGAGAACA  992
      |||||||| |||||||||   |||||||| ||||||||||   |||||| 
seq2  TTTGTTTCTTGGATTCTTTGTTGGGGCAG-AAAGAGGACAACAGAGAACT  998

seq1  AC-TCTGAAAAGGAAAAATGTGTAAAGCTCAAGAGAGGGGAAAGAAAGGA  1041
      || ||||||| ||||||||||   |||||  |||||| ||||||||| ||
seq2  ACTTCTGAAAGGGAAAAATGTTGTAAGCTTCAGAGAGTGGAAAGAAA-GA  1047

seq1  CACAG-CCCTGGCTCCTGATGGAGCAAATGGGCAGCTGCATCAGAGTGAC  1090
      ||||| |||||||| |||||||||| |||||||||||||||||||  |||
seq2  CACAGTCCCTGGCTTCTGATGGAGC-AATGGGCAGCTGCATCAGATGGAC  1096

seq1  TGAGATGGAAAAGCCCCTACAGACTGGGCCAGTAAGGACCT  1131
      ||| |||| ||||||  ||||||||||| |||||  |||||
seq2  TGAAATGGGAAAGCCTATACAGACTGGGTCAGTA--GACCT  1135