BAC Information

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BAC

Clone NameB6Ng01-319M06
Chromosome15 (Build37)
Map Location 65,151,394 - 65,175,035
singlet/doubletdoublet
Overlap genenone
Upstream geneDdef1, Adcy8, LOC268812, LOC100040790, LOC665836
Downstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319M06.bB6Ng01-319M06.g
ACCGA109315GA109316
length1,1231,113
definitionB6Ng01-319M06.b B6Ng01-319M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,173,908 - 65,175,035)(65,151,394 - 65,152,511)
sequence
gaattctactgggtttacaatccacatttttattatctatttattggatt
ataggcaccaagactgttagcatctctctactactgtgaatagatgagca
ataaacgatgcgcaattacttcagtgataagatgttgagtcctttgtgta
tatgcccagaagtggtgctgctgggtagtgtggtagtactggttttagtt
tcctgagaaatctcaacactgatttccacatgcactctctcctcaacact
cagtaaaagtgctacctgttccacagtcccttccttaattctataagatg
gaatcaataaattcttcatctttcttccaacagctattgactcctgttac
taccattttacaaatatattgaaataatttattgattgagagactttctg
tgttattaaggaaaggtctatcttctaatattctttgaatttaacattgg
tttgcatgatgtcttgcatgtcatatgtgataacatttgttgaattaatg
aataataaatgcaaatgaaaatcaatgaagcttacattatacagtgaagg
aaactctcaatactgatttctaaggggtcaggtatagtttttcagtagat
agcagacccttaagtacagcctctgctaattaatgttacatattcatcca
aatacatcatgttaaaatcaaattatttccagtgatgactagaattagtc
aatctgaatacataaacaaggagctatgactcaggttggatcttgccaag
aacaagtgcacatttgcaagagtcattgctaaattggcaccgttttcatt
ctagcaaatgaagtgtgtgggtgatataacctagttaatgaacacattct
cacaattggtgctcaaaattaatattagtcagatgtttgatccgatatga
agagggtggcaagcatttgccaaaatgttaaactttagaactgattcttt
aactgcagcaatttctctgtgtgtataattattcagaagccttctagaaa
ttagtttcctaaaagaaagttcatgctctctgactttcagtgaatctctg
tcgtctggcaccgcaaatagaagagactgtttttcttaacagaacaggat
tctcatcccagggacgcaatatt

gaattcatttaccaaggctcagctgccacagctcacatccaacagtgcac
tctgtatttatttggtctttggcagcaaccttatcagacgtaagctgcaa
accaatacgacagcaatgtgaaccagtgtttcacatatataagcagtagc
ttaaactgagtgagtgggtcttagaaacacactggacattcagaatccag
aactatttttccatgaacacaagggaagtggcaaagtatgcaaattgaat
caaaggaaaaaagaaaggaggagagggagatacaaattgagtacacatga
agggagaggaagtaaggattttcctcacacaggcaagattattaatgact
aatggaaaagaaagagggaatctacagaaattgagcataagacagaaaca
tgccaatgagaagttgggattctatgtacccagggactcagctacacatc
aaaagccatgatgtagagactgaggtcacactaaaatactctacctccaa
atacctcaagcaatccacacaggcggtgatgcctaataaggggtacagaa
tattttctgcttgttaaatttcttagagtaactcggtgacaggggagctt
atcttcagtctcagggaactgctaaggtccaggaaagtagactgtgctgc
atgacaatttgacatgaagacaatgacctgggaagctttgagatattgta
ccatgagcacatctagacatgttcgagtgcaaaaccagccccccttttgg
acagcttcttgggtagagattatgacactatgttataattgtggattcca
ccactaagcatgtctactgagttatgaactccttgaaaaccagacataac
atttttcatcagcgtaacagagacagtggatatagatcttgacatgtaga
atatttataatgtggtttttactgatgcatgtgatatggcattcttttta
aattttgttatatttttattttattttttacactccatattccattcttg
ccaccccatctacatctgactgctccatgtccatactcatccccacccca
ccctgttctctgaactacaaatatagggagtctggagcaccgaatcatca
gagaaaacagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_65173908_65175035
seq2: B6Ng01-319M06.b_47_1169 (reverse)

seq1  AATA-TGCGTTCCTGGGATGGAGAATCCTG-TCTGTTAAG-AAAACAGTT  47
      |||| ||||| |||||||| |||||||||| ||||||||| ||||||| |
seq2  AATATTGCGTCCCTGGGAT-GAGAATCCTGTTCTGTTAAGAAAAACAG-T  48

seq1  CTCTTCTATTTTGCGTGCCAGAAGGACAAGGAGGATTTCACTGAAAGTCA  97
      |||||||||||   ||||||| | ||||  ||    ||||||||||||||
seq2  CTCTTCTATTTGCGGTGCCAG-ACGACAGAGA----TTCACTGAAAGTCA  93

seq1  GAGAGCATGGAACTTTCTTTTAGGAAACTAATTTCTAGAAGGCTTCTGAA  147
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAT-GAACTTTCTTTTAGGAAACTAATTTCTAGAAGGCTTCTGAA  142

seq1  TAATTATACACACAGAGAAATTGCTGCAGTTAAAGAATCAGTTCTAAAGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATACACACAGAGAAATTGCTGCAGTTAAAGAATCAGTTCTAAAGT  192

seq1  TTAACATTTTGGCAAATGCTTGCCACCCTCTTCATATCGGATCAAACATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTTGGCAAATGCTTGCCACCCTCTTCATATCGGATCAAACATC  242

seq1  TGACTAATATTAATTTTGAGCACCAATTGTGAGAATGTGTTCATTAACTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATATTAATTTTGAGCACCAATTGTGAGAATGTGTTCATTAACTA  292

seq1  GGTTATATCACCCACACACTTCATTTGCTAGAATGAAAACGGTGCCAATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATATCACCCACACACTTCATTTGCTAGAATGAAAACGGTGCCAATT  342

seq1  TAGCAATGACTCTTGCAAATGTGCACTTGTTCTTGGCAAGATCCAACCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGACTCTTGCAAATGTGCACTTGTTCTTGGCAAGATCCAACCTG  392

seq1  AGTCATAGCTCCTTGTTTATGTATTCAGATTGACTAATTCTAGTCATCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAGCTCCTTGTTTATGTATTCAGATTGACTAATTCTAGTCATCAC  442

seq1  TGGAAATAATTTGATTTTAACATGATGTATTTGGATGAATATGTAACATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAATTTGATTTTAACATGATGTATTTGGATGAATATGTAACATT  492

seq1  AATTAGCAGAGGCTGTACTTAAGGGTCTGCTATCTACTGAAAAACTATAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCAGAGGCTGTACTTAAGGGTCTGCTATCTACTGAAAAACTATAC  542

seq1  CTGACCCCTTAGAAATCAGTATTGAGAGTTTCCTTCACTGTATAATGTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCTTAGAAATCAGTATTGAGAGTTTCCTTCACTGTATAATGTAA  592

seq1  GCTTCATTGATTTTCATTTGCATTTATTATTCATTAATTCAACAAATGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTGATTTTCATTTGCATTTATTATTCATTAATTCAACAAATGTT  642

seq1  ATCACATATGACATGCAAGACATCATGCAAACCAATGTTAAATTCAAAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATATGACATGCAAGACATCATGCAAACCAATGTTAAATTCAAAGA  692

seq1  ATATTAGAAGATAGACCTTTCCTTAATAACACAGAAAGTCTCTCAATCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAAGATAGACCTTTCCTTAATAACACAGAAAGTCTCTCAATCAA  742

seq1  TAAATTATTTCAATATATTTGTAAAATGGTAGTAACAGGAGTCAATAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTTCAATATATTTGTAAAATGGTAGTAACAGGAGTCAATAGCT  792

seq1  GTTGGAAGAAAGATGAAGAATTTATTGATTCCATCTTATAGAATTAAGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGAAAGATGAAGAATTTATTGATTCCATCTTATAGAATTAAGGA  842

seq1  AGGGACTGTGGAACAGGTAGCACTTTTACTGAGTGTTGAGGAGAGAGTGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGTGGAACAGGTAGCACTTTTACTGAGTGTTGAGGAGAGAGTGC  892

seq1  ATGTGGAAATCAGTGTTGAGATTTCTCAGGAAACTAAAACCAGTACTACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAATCAGTGTTGAGATTTCTCAGGAAACTAAAACCAGTACTACC  942

seq1  ACACTACCCAGCAGCACCACTTCTGGGCATATACACAAAGGACTCAACAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACCCAGCAGCACCACTTCTGGGCATATACACAAAGGACTCAACAT  992

seq1  CTTATCACTGAAGTAATTGCGCATCGTTTATTGCTCATCTATTCACAGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCACTGAAGTAATTGCGCATCGTTTATTGCTCATCTATTCACAGTA  1042

seq1  GTAGAGAGATGCTAACAGTCTTGGTGCCTATAATCCAATAAATAGATAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAGATGCTAACAGTCTTGGTGCCTATAATCCAATAAATAGATAAT  1092

seq1  AAAAATGTGGATTGTAAACCCAGTAGAATTC  1128
      |||||||||||||||||||||||||||||||
seq2  AAAAATGTGGATTGTAAACCCAGTAGAATTC  1123


seq1: chr15_65151394_65152511
seq2: B6Ng01-319M06.g_70_1182

seq1  GAATTCATTTACCAAGGCTCAGCTGCCACAGCTCACATCCAACAGTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTACCAAGGCTCAGCTGCCACAGCTCACATCCAACAGTGCAC  50

seq1  TCTGTATTTATTTGGTCTTTGGCAGCAACCTTATCAGACGTAAGCTGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTTATTTGGTCTTTGGCAGCAACCTTATCAGACGTAAGCTGCAA  100

seq1  ACCAATACGACAGCAATGTGAACCAGTGTTTCACATATATAAGCAGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACGACAGCAATGTGAACCAGTGTTTCACATATATAAGCAGTAGC  150

seq1  TTAAACTGAGTGAGTGGGTCTTAGAAACACACTGGACATTCAGAATCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGAGTGAGTGGGTCTTAGAAACACACTGGACATTCAGAATCCAG  200

seq1  AACTATTTTTCCATGAACACAAGGGAAGTGGCAAAGTATGCAAATTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTTCCATGAACACAAGGGAAGTGGCAAAGTATGCAAATTGAAT  250

seq1  CAAAGGAAAAAAGAAAGGAGGAGAGGGAGATACAAATTGAGTACACATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAAAAAAGAAAGGAGGAGAGGGAGATACAAATTGAGTACACATGA  300

seq1  AGGGAGAGGAAGTAAGGATTTTCCTCACACAGGCAAGATTATTAATGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGGAAGTAAGGATTTTCCTCACACAGGCAAGATTATTAATGACT  350

seq1  AATGGAAAAGAAAGAGGGAATCTACAGAAATTGAGCATAAGACAGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAAGAAAGAGGGAATCTACAGAAATTGAGCATAAGACAGAAACA  400

seq1  TGCCAATGAGAAGTTGGGATTCTATGTACCCAGGGACTCAGCTACACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATGAGAAGTTGGGATTCTATGTACCCAGGGACTCAGCTACACATC  450

seq1  AAAAGCCATGATGTAGAGACTGAGGTCACACTAAAATACTCTACCTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCATGATGTAGAGACTGAGGTCACACTAAAATACTCTACCTCCAA  500

seq1  ATACCTCAAGCAATCCACACAGGCGGTGATGCCTAATAAGGGGTACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCAAGCAATCCACACAGGCGGTGATGCCTAATAAGGGGTACAGAA  550

seq1  TATTTTCTGCTTGTTAAATTTCTTAGAGTAACTCGGTGACAGGGGAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGCTTGTTAAATTTCTTAGAGTAACTCGGTGACAGGGGAGCTT  600

seq1  ATCTTCAGTCTCAGGGAACTGCTAAGGTCCAGGAAAGTAGACTGTGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGTCTCAGGGAACTGCTAAGGTCCAGGAAAGTAGACTGTGCTGC  650

seq1  ATGACAATTTGACATGAAGACAATGACCTGGGAAGCTTTGAGATATTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATTTGACATGAAGACAATGACCTGGGAAGCTTTGAGATATTGTA  700

seq1  CCATGAGCACATCTAGACATGTTCGAGTGCAAAACCAGCCCCCCTTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGCACATCTAGACATGTTCGAGTGCAAAACCAGCCCCCCTTTTGG  750

seq1  ACAGCTTCTTGGGTAGAGATTATGACACTATGTTATAATTGTGGATTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCTTGGGTAGAGATTATGACACTATGTTATAATTGTGGATTCCA  800

seq1  CCACTAAGCATGTCTACTGAGTTATGAACTCCTTGAAAACCAGACATAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGCATGTCTACTGAGTTATGAACTCCTTGAAAACCAGACATAAC  850

seq1  ATTTTTCATCAGCGTAACAGAGACAGTGGATATAGATCTTGACATGTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCATCAGCGTAACAGAGACAGTGGATATAGATCTTGACATGTAGA  900

seq1  ATATTTATAATGTGGTTTTTACTGATGCATGTGATATGGCATTCTTTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATAATGTGGTTTTTACTGATGCATGTGATATGGCATTCTTTTTA  950

seq1  AATTTTGTTATATTTTTATTTTATTTTTTACACTCCATATTCCATTCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATTTTGTTATATTTTTATTTTATTTTTTACACTCCATATTCCATTC-TT  999

seq1  GCCACCCCATCTACCTTCTGACTGCTCCATGTCCCATACCTCATCCCCAC  1050
      ||||||||||||| | |||||||||||||||| ||||| |||||||||||
seq2  GCCACCCCATCTA-CATCTGACTGCTCCATGT-CCATA-CTCATCCCCAC  1046

seq1  CCCACCCTG-TCTCTGAACCACAAATATAGGGAAGTCTGGAAGCAACCGA  1099
      ||||||||| ||||||||| |||||||||||| ||||||| |||| |  |
seq2  CCCACCCTGTTCTCTGAACTACAAATATAGGG-AGTCTGG-AGCACCGAA  1094

seq1  TCATCAGAGAAAACAGTAG  1118
      |||||||||||||||||||
seq2  TCATCAGAGAAAACAGTAG  1113


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