BAC Information

Click to search

BAC

Clone NameB6Ng01-320N07
Chromosome15 (Build37)
Map Location 63,905,493 - 64,042,803
singlet/doubletdoublet
Overlap geneDdef1
Upstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik
Downstream geneAdcy8, LOC268812, LOC100040790, LOC665836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320N07.bB6Ng01-320N07.g
ACCGA110098GA110099
length1,1371,155
definitionB6Ng01-320N07.b B6Ng01-320N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,905,493 - 63,906,627)(64,041,665 - 64,042,803)
sequence
gaattcttgaaacctccaagaacgcccgcccctaacaccttgattttaga
cttctaacctccatagtcataagaaatatgtggatttaaactgttgcatc
tgcttactttgtcctagggggccgtaggaaaccacccccgagccctgggt
ctgatctgtaaaacagcaacaacccaacctgcaccgtgtagctgatggga
cgcaatcaggaaggttaggacactgcctggcatgcagtatgcacctagca
cggcagtcactcagcctccctgaacccagacacttgcaggcatgggcagg
gctgcacctggggtccagctattctcagggggtttacataccaaggtcgc
cttggctctcctgggtctttctctctccctcagttgtactttggggtgtc
caggtcagcctggcacagacagcagcccaccactttgcttccccagggca
cagggaagggcagggagctgactggaggggctattcagagggaggagtcc
cagctcccaacgttgttgcattgattaatttcaagtgagcagccaggcaa
aaactgagagccccttctccctctccttctaccgggctgggtggaaggtg
ggctcttcggtgttggaggacctgcagcgtaaactggcattaagcacaca
ggcacacacaggtgctctctgtgataccaagacatggacagagcttgcca
tccctgtgtccggttgaagaaagtaaatgtgggagatgggaaggcttgtt
caaggtcatgcatctggctaggtccccaagaagtgtcagagccagactct
actccccctcagcccactattctgtgtaggtggtccccacatctgggccc
cttttctgtgactgctaaggatgctccttctcaatggtccttccttccta
acagggtgcgacaaatagaattacgttttttccatttatgtttggtttgt
tgagatgggggaccttatactctaacccaggccagcctcacacttactat
ggaagcttaggaaatctcctgcctcagcctccttcctggttaggcttaca
gtttatttataccaagccaaacaatgccacctgactagagattctggaaa
cgttctggttggccatcagaagaattctgcctttctc

gaattcataaaactgaattctagttgttagaaatgataagtattttcaga
cttgttccggtgtttatcttgtggctactccatttattctctctgtggaa
ggacggggcagatctacttctggcataatcgctcccaaggtcaacttgaa
ttctctcaaacttccaagagtagttgtcttagttgacaaactactgtgac
caagagcagcctgctgggagaaggaagggtttggcccatttccacctcag
gccatcatcaaaggaaatcagggcaggagctgaaggcagaagctccagag
cgctgcttactggtatgccctcctgttgcccctcctgtcacccctcttgt
cgcccctcctgtcttgccttgctcttgcccttgtgatgtggctcgcttcg
gatgcacagtaagaaatgcaggcacatatcttgtcacacgtctatgcagc
tgtggagtccaccctgtgtgtacctcttttctttcagctctcatgtgaca
tttctcaggcagtctctgcagttgtttggcacttgagggaatggaacctt
ttagcacatctggaggtgttgtttctggaggggggctgccttaactgaag
gacaacaccatctatctagctctctacagtatgggactcataaaaatact
tttacttgtctgcttcttgccactgggcaattacaaaggtttcagaaaaa
aagaaaaagaaaaaagaaaagaaaaaaaaagcatcattcagacctagttg
tgggtgtgcctgacagatgaaatgctcttaaaatcttttaaagtacatga
attttgcgctctgttgatgagttcttttgcctgagcggatgagctgagaa
agcatctaaaatgaattctgagacattgcctcttccttttagtacacccc
cttcgctcgccccgtaagaaaactacatggtgtctcatacagtgttttga
agtcttcttcagactttggctcattggaagttggtaactccaaataacac
acaggcgtggcagtctaaactgaatcctctgcagaacccttgtgagctgg
agctgccagttgaatggaaggtaactcctggtctcttttttctgaagtta
ccatcaaggctcatggaactactcagacattgcttccacggcgaatggag
cactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_63905493_63906627
seq2: B6Ng01-320N07.b_46_1182

seq1  GAATTCTTGAAACCTCCAAGAACGCCCGCCCCTAACACCTTGATTTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAACCTCCAAGAACGCCCGCCCCTAACACCTTGATTTTAGA  50

seq1  CTTCTAACCTCCATAGTCATAAGAAATATGTGGATTTAAACTGTTGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAACCTCCATAGTCATAAGAAATATGTGGATTTAAACTGTTGCATC  100

seq1  TGCTTACTTTGTCCTAGGGGGCCGTAGGAAACCACCCCCGAGCCCTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTTTGTCCTAGGGGGCCGTAGGAAACCACCCCCGAGCCCTGGGT  150

seq1  CTGATCTGTAAAACAGCAACAACCCAACCTGCACCGTGTAGCTGATGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTGTAAAACAGCAACAACCCAACCTGCACCGTGTAGCTGATGGGA  200

seq1  CGCAATCAGGAAGGTTAGGACACTGCCTGGCATGCAGTATGCACCTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATCAGGAAGGTTAGGACACTGCCTGGCATGCAGTATGCACCTAGCA  250

seq1  CGGCAGTCACTCAGCCTCCCTGAACCCAGACACTTGCAGGCATGGGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGTCACTCAGCCTCCCTGAACCCAGACACTTGCAGGCATGGGCAGG  300

seq1  GCTGCACCTGGGGTCCAGCTATTCTCAGGGGGTTTACATACCAAGGTCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCTGGGGTCCAGCTATTCTCAGGGGGTTTACATACCAAGGTCGC  350

seq1  CTTGGCTCTCCTGGGTCTTTCTCTCTCCCTCAGTTGTACTTTGGGGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCTCCTGGGTCTTTCTCTCTCCCTCAGTTGTACTTTGGGGTGTC  400

seq1  CAGGTCAGCCTGGCACAGACAGCAGCCCACCACTTTGCTTCCCCAGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGCCTGGCACAGACAGCAGCCCACCACTTTGCTTCCCCAGGGCA  450

seq1  CAGGGAAGGGCAGGGAGCTGACTGGAGGGGCTATTCAGAGGGAGGAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGGGCAGGGAGCTGACTGGAGGGGCTATTCAGAGGGAGGAGTCC  500

seq1  CAGCTCCCAACGTTGTTGCATTGATTAATTTCAAGTGAGCAGCCAGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCCAACGTTGTTGCATTGATTAATTTCAAGTGAGCAGCCAGGCAA  550

seq1  AAACTGAGAGCCCCTTCTCCCTCTCCTTCTACCGGGCTGGGTGGAAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGAGCCCCTTCTCCCTCTCCTTCTACCGGGCTGGGTGGAAGGTG  600

seq1  GGCTCTTCGGTGTTGGAGGACCTGCAGCGTAAACTGGCATTAAGCACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTCGGTGTTGGAGGACCTGCAGCGTAAACTGGCATTAAGCACACA  650

seq1  GGCACACACAGGTGCTCTCTGTGATACCAAGACATGGACAGAGCTTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACAGGTGCTCTCTGTGATACCAAGACATGGACAGAGCTTGCCA  700

seq1  TCCCTGTGTCCGGTTGAAGAAAGTAAATGTGGGAGATGGGAAGGCTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGTCCGGTTGAAGAAAGTAAATGTGGGAGATGGGAAGGCTTGTT  750

seq1  CAAGGTCATGCATCTGGCTAGGTCCCCAAGAAGTGTCAGAGCCAGACTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCATGCATCTGGCTAGGTCCCCAAGAAGTGTCAGAGCCAGACTCT  800

seq1  ACTCCCCCTCAGCCCACTATTCTGTGTAGGTGGTCCCCACATCTGGGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCCTCAGCCCACTATTCTGTGTAGGTGGTCCCCACATCTGGGCCC  850

seq1  CTTTTCTGTGACTGCTAAGGATGCTCCTTCTCAATGGTCCTTCCTTCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGTGACTGCTAAGGATGCTCCTTCTCAATGGTCCTTCCTTCCTA  900

seq1  ACAGGGTGCGACAAATAGAATTACGTTTTTTCCATTTATGTTTGGTTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACAGGGTGCGACAAATAGAATTACGTTTTTTCCATTTATGTTTGG-TTTG  949

seq1  TTGAGATGGGG--ACTTATACTCTAACCCAGGCCAGCCTCACACTTACTA  998
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGGGGGACCTTATACTCTAACCCAGGCCAGCCTCACACTTACTA  999

seq1  TGGAAGTCTAGGAAATCCTCCTGCCTCAGCCTCCTCACT-GTTAGGCTTA  1047
      ||||||  |||||||| ||||||||||||||||||  || ||||||||||
seq2  TGGAAGCTTAGGAAAT-CTCCTGCCTCAGCCTCCTTCCTGGTTAGGCTTA  1048

seq1  CAGTTTATTTATACCAAGGCCAACCAATGCCAACTGGACTAGAGATTCTG  1097
      ||||||||||||||||| ||||| |||||||| || ||||||||||||||
seq2  CAGTTTATTTATACCAA-GCCAAACAATGCCACCT-GACTAGAGATTCTG  1096

seq1  G-AACGTTCTGTTGGGCCATCAGGAAGAA-TCTGC--TTCTC  1135
      | ||||||||| | |||||||| |||||| |||||  |||||
seq2  GAAACGTTCTGGTTGGCCATCA-GAAGAATTCTGCCTTTCTC  1137


seq1: chr15_64041665_64042803
seq2: B6Ng01-320N07.g_70_1224 (reverse)

seq1  GAGTGCTCCCCATCTGCCGTGGAAGC-ATGTCTGTGT--GTCCCTGGACC  47
      |||||||  ||||  ||||||||||| ||||||| ||   ||| ||  ||
seq2  GAGTGCT--CCATTCGCCGTGGAAGCAATGTCTGAGTAGTTCCATGAGCC  48

seq1  TCGAT-GTAATTTCAG-AAAAAGAGA-CAAGATGTACTCTCAATTCACCT  94
      | ||| |||| ||||| ||||||||| || ||  |||  || ||||| ||
seq2  TTGATGGTAACTTCAGAAAAAAGAGACCAGGAGTTACCTTCCATTCAACT  98

seq1  GGCAGCT-CAGCT--CCAGGGTCTCGCAGA-GAATCAGTTTAGACTGCAA  140
      ||||||| |||||  | |||||   ||||| || |||||||||||||| |
seq2  GGCAGCTCCAGCTCACAAGGGTTCTGCAGAGGATTCAGTTTAGACTGCCA  148

seq1  CGCCTGTGTG-TATTTGGAGTTACCAAC-TCCAATGAG-CAAAGTCTG-A  186
      |||||||||| ||||||||||||||||| ||||||||| ||||||||| |
seq2  CGCCTGTGTGTTATTTGGAGTTACCAACTTCCAATGAGCCAAAGTCTGAA  198

seq1  GAAGACTTCAAAACACTGTATGAGACACCATGTAG-TTTCTTACGGGGCG  235
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAGACTTCAAAACACTGTATGAGACACCATGTAGTTTTCTTACGGGGCG  248

seq1  AGCGA--GGGGTGTACT-AAAGGGAGAGGCAATGTCTCAGAATTCATTTT  282
      |||||  |||||||||| ||||| ||||||||||||||||||||||||||
seq2  AGCGAAGGGGGTGTACTAAAAGGAAGAGGCAATGTCTCAGAATTCATTTT  298

seq1  AGATGCTTTCTCAGCTCATCCGCTCAGGC-AAAGAACTCATCAACAGAGC  331
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGATGCTTTCTCAGCTCATCCGCTCAGGCAAAAGAACTCATCAACAGAGC  348

seq1  GC-AAATTCATGTACTTTTAAAAGATTTTTAAGAGCATTTCATCTGTCAG  380
      || |||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  GCAAAATTCATGTAC-TTTAAAAGA-TTTTAAGAGCATTTCATCTGTCAG  396

seq1  GCACACCCACAACTAGGTCTGAATGATGCTTTTTTTTTCTTTTCTTTTTT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCCACAACTAGGTCTGAATGATGCTTTTTTTTTCTTTTCTTTTTT  446

seq1  CTTTTTCTTTTTTTCTGAAACCTTTGTAATTGCCCAGTGGCAAGAAGCAG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTTTTTTCTGAAACCTTTGTAATTGCCCAGTGGCAAGAAGCAG  496

seq1  ACAAGTAAAAGTATTTTTATGAGTCCCATACTGTAGAGAGCTAGATAGAT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAAAAGTATTTTTATGAGTCCCATACTGTAGAGAGCTAGATAGAT  546

seq1  GGTGTTGTCCTTCAGTTAAGGCAGCCCCCCTCCAGAAACAACACCTCCAG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGTCCTTCAGTTAAGGCAGCCCCCCTCCAGAAACAACACCTCCAG  596

seq1  ATGTGCTAAAAGGTTCCATTCCCTCAAGTGCCAAACAACTGCAGAGACTG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTAAAAGGTTCCATTCCCTCAAGTGCCAAACAACTGCAGAGACTG  646

seq1  CCTGAGAAATGTCACATGAGAGCTGAAAGAAAAGAGGTACACACAGGGTG  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAAATGTCACATGAGAGCTGAAAGAAAAGAGGTACACACAGGGTG  696

seq1  GACTCCACAGCTGCATAGACGTGTGACAAGATATGTGCCTGCATTTCTTA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACAGCTGCATAGACGTGTGACAAGATATGTGCCTGCATTTCTTA  746

seq1  CTGTGCATCCGAAGCGAGCCACATCACAAGGGCAAGAGCAAGGCAAGACA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATCCGAAGCGAGCCACATCACAAGGGCAAGAGCAAGGCAAGACA  796

seq1  GGAGGGGCGACAAGAGGGGTGACAGGAGGGGCAACAGGAGGGCATACCAG  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCGACAAGAGGGGTGACAGGAGGGGCAACAGGAGGGCATACCAG  846

seq1  TAAGCAGCGCTCTGGAGCTTCTGCCTTCAGCTCCTGCCCTGATTTCCTTT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGCGCTCTGGAGCTTCTGCCTTCAGCTCCTGCCCTGATTTCCTTT  896

seq1  GATGATGGCCTGAGGTGGAAATGGGCCAAACCCTTCCTTCTCCCAGCAGG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGCCTGAGGTGGAAATGGGCCAAACCCTTCCTTCTCCCAGCAGG  946

seq1  CTGCTCTTGGTCACAGTAGTTTGTCAACTAAGACAACTACTCTTGGAAGT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTGGTCACAGTAGTTTGTCAACTAAGACAACTACTCTTGGAAGT  996

seq1  TTGAGAGAATTCAAGTTGACCTTGGGAGCGATTATGCCAGAAGTAGATCT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAATTCAAGTTGACCTTGGGAGCGATTATGCCAGAAGTAGATCT  1046

seq1  GCCCCGTCCTTCCACAGAGAGAATAAATGGAGTAGCCACAAGATAAACAC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGTCCTTCCACAGAGAGAATAAATGGAGTAGCCACAAGATAAACAC  1096

seq1  CGGAACAAGTCTGAAAATACTTATCATTTCTAACAACTAGAATTCAGTTT  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACAAGTCTGAAAATACTTATCATTTCTAACAACTAGAATTCAGTTT  1146

seq1  TATGAATTC  1139
      |||||||||
seq2  TATGAATTC  1155


| Home | SequenceCutter | Blast | Download |