BAC Information

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BAC

Clone NameB6Ng01-321K24
Chromosome15 (Build37)
Map Location 6,255,822 - 6,372,507
singlet/doubletdoublet
Overlap geneDab2
Upstream geneLOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
Downstream geneC9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr, Lifr, Egflam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321K24.bB6Ng01-321K24.g
ACCGA110727GA110728
length979851
definitionB6Ng01-321K24.b B6Ng01-321K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,255,822 - 6,256,797)(6,371,661 - 6,372,507)
sequence
gaattcactgccttgcaattacactcaagatctgtcagccagctctactt
ccagcccttgaagttcctcttacctcttagtttgcaagactgtaaattca
atgtgcccccatcactttgttcttgaactgtagaggtttagaatttttag
tctgtcttgggtttgtttgtttctatagggaaagactcatcagttttgct
gacccttaaaaaattggggttctttaattatctctttagaaaacctttgt
ttcttaactttttttcctacagtctttactatttctgttttgctttgcat
tttcatatttttttccttttattttcaggtgccaaggcagaaatttcaat
tgttaagtagaagtctttacctttttaaatgtagttgtagctgggagggg
tggtgcagcctggtttacagagtgagtttcagcacagccagggctacaca
gagaaaccatgcctcagagagagagagagacagagagacagacagagaga
cagagagacagagagacagagagagacagagagggagagaatgagaatta
aataactgaataactgtggttgtctatggccagaagcttctccaggagcc
cacacatcttgatgttgttccttcatcctcagtcaccatgaaatacatcg
tacgctctctggtgattctcgttcttcatctattgctggcctagaactgt
tatttaattcccatatgaactttgattcttccttgtttgtttctaattcc
acactgcacatgatctcaatccctttgtatttatcaaggctttttttttg
aggggggggggctgttccaaaatgttttgtactttgacagagatgtgtat
tctagacattttgggttgttttagttgttttttgtttggttgtttgtttc
tgggcagtaccctatagcaaaggagtaattcacagtctgatgtgaaatac
tgggttgttgatgaggttatgctttgaaa

gaattccaggacagtcagggctatacagagaaagcctgtctcaaaaaaca
aatacaaaaataaaaacaaaacaaaaaaacccaaacacttctactctcaa
cagagaaccagttctcaggtgtattatgctttagagcttacctgttgccc
tgtttttatagcaaaaaattgatgctggccttcacctccacacacataac
caaatgctctgttgtctgtcacatcacgagcaatgaaggaaatcttattt
actggatgttcatgttcaattaccttaaaagggaacatagaagagcaata
gtgaaaaataaagaatggacttgttggctatcacagttggcgatcagaaa
caaatgtgaagggaaatacaaagagtttaaagcttttggttggttggttg
ttttttcaagacagggtttctctgtgtagccctggctgtcctggcattca
ctctgtagaccaggctggcctcagactcagaaatccacctgcctctgcct
cctgagtgctgggattaaaggcgtgctccaccaatgcccggtgagtttaa
agcttttgaataaagactttttagtcttgggttcaaggctacatctagat
ttctttttgctagaaaaggctccaaaaggaaggataaatagaaaacaaaa
gtagaaaaacatcctttctaaaaatataagtacttgactctctctctcta
tccaaaagataaaaatgccacctacaagaaggactgaggggagctttcaa
tggttggtgagagttaagagggagcagacagccccttgaaccaacccgaa
gttgagctgggtgtgctgtgtcatttagaagtccctggggaatttgagga
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_6255822_6256797
seq2: B6Ng01-321K24.b_45_1023

seq1  GAATTCACTGCCTTGCAATTACACTCAAGATCTGTCAGCCAGCTCTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCCTTGCAATTACACTCAAGATCTGTCAGCCAGCTCTACTT  50

seq1  CCAGCCCTTGAAGTTCCTCTTACCTCTTAGTTTGCAAGACTGTAAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTTGAAGTTCCTCTTACCTCTTAGTTTGCAAGACTGTAAATTCA  100

seq1  ATGTGCCCCCATCACTTTGTTCTTGAACTGTAGAGGTTTAGAATTTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCCCCATCACTTTGTTCTTGAACTGTAGAGGTTTAGAATTTTTAG  150

seq1  TCTGTCTTGGGTTTGTTTGTTTCTATAGGGAAAGACTCATCAGTTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTGGGTTTGTTTGTTTCTATAGGGAAAGACTCATCAGTTTTGCT  200

seq1  GACCCTTAAAAAATTGGGGTTCTTTAATTATCTCTTTAGAAAACCTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTAAAAAATTGGGGTTCTTTAATTATCTCTTTAGAAAACCTTTGT  250

seq1  TTCTTAACTTTTTTTCCTACAGTCTTTACTATTTCTGTTTTGCTTTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACTTTTTTTCCTACAGTCTTTACTATTTCTGTTTTGCTTTGCAT  300

seq1  TTTCATATTTTTTTCCTTTTATTTTCAGGTGCCAAGGCAGAAATTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATTTTTTTCCTTTTATTTTCAGGTGCCAAGGCAGAAATTTCAAT  350

seq1  TGTTAAGTAGAAGTCTTTACCTTTTTAAATGTAGTTGTAGCTGGGAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGTAGAAGTCTTTACCTTTTTAAATGTAGTTGTAGCTGGGAGGGG  400

seq1  TGGTGCAGCCTGGTTTACAGAGTGAGTTTCAGCACAGCCAGGGCTACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCAGCCTGGTTTACAGAGTGAGTTTCAGCACAGCCAGGGCTACACA  450

seq1  GAGAAACCATGCCTCAGAGAGAGAGAGAGACAGAGAGACAGACAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCATGCCTCAGAGAGAGAGAGAGACAGAGAGACAGACAGAGAGA  500

seq1  CAGAGAGACAGAGAGACAGAGAGAGACAGAGAGGGAGAGAATGAGAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGACAGAGAGACAGAGAGAGACAGAGAGGGAGAGAATGAGAATTA  550

seq1  AATAACTGAATAACTGTGGTTGTCTATGGCCAGAAGCTTCTCCAGGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGAATAACTGTGGTTGTCTATGGCCAGAAGCTTCTCCAGGAGCC  600

seq1  CACACATCTTGATGTTGTTCCTTCATCCTCAGTCACCATGAAATACATCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATCTTGATGTTGTTCCTTCATCCTCAGTCACCATGAAATACATCG  650

seq1  TACGCTCTCTGGTGATTCTCGTTCTTCATCTATTGCTGGCCTAGAACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTCTCTGGTGATTCTCGTTCTTCATCTATTGCTGGCCTAGAACTGT  700

seq1  TATTTAATTCCCATATGAACTTTGATTCTTCCTTGTTTGTTTCTAATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATTCCCATATGAACTTTGATTCTTCCTTGTTTGTTTCTAATTCC  750

seq1  ACACTGCACATGATCTCAATCCCTTTGTATTTATCAAGGCTTTTTTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCACATGATCTCAATCCCTTTGTATTTATCAAGGCTTTTTTTTTG  800

seq1  A-GGGGGGGGGCTGTTCCAAAATGTTTTGTAC-TTGACAGAGATGTGTAT  848
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGGGGGGGGGCTGTTCCAAAATGTTTTGTACTTTGACAGAGATGTGTAT  850

seq1  TCTAGACATTTT-GGTTGTTTTAGTTGTTTTTTGTTTGTTTGTTTGTTTT  897
      |||||||||||| ||||||||||||||||||||||||| |||||||||| 
seq2  TCTAGACATTTTGGGTTGTTTTAGTTGTTTTTTGTTTGGTTGTTTGTTTC  900

seq1  CTGGCAGTACCCTATAGC-AAGGAGTATTTCACAGTCTGATGTGAAATAC  946
        |||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  TGGGCAGTACCCTATAGCAAAGGAGTAATTCACAGTCTGATGTGAAATAC  950

seq1  TGGGTTTGTTGATGAGGTTATGCTTTGAAA  976
      |||| |||||||||||||||||||||||||
seq2  TGGG-TTGTTGATGAGGTTATGCTTTGAAA  979


seq1: chr15_6371661_6372507
seq2: B6Ng01-321K24.g_64_914 (reverse)

seq1  TGCCTCAAATT-CCCAGGGAC-TCTAAATGACACAGCACACCCAGCTCAA  48
      | ||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  TTCCTCAAATTCCCCAGGGACTTCTAAATGACACAGCACACCCAGCTCAA  50

seq1  C-TCGGGTTGGTTCAAGGGGCTGTCTGCTCCCTCTTAACTCTCACCAACC  97
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGGTTGGTTCAAGGGGCTGTCTGCTCCCTCTTAACTCTCACCAACC  100

seq1  ATTG-AAGCTCCCCTCAGTCCTTCCTTGTAGGTGGCA-TTTTATCTTTTG  145
      |||| |||||||||||||||||| ||||||||||||| ||||||||||||
seq2  ATTGAAAGCTCCCCTCAGTCCTT-CTTGTAGGTGGCATTTTTATCTTTTG  149

seq1  GATAGAGAGAGAGAGTCAAGTACTTATATTTTTAGAAAGGATGTTTTTCT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGAGAGAGAGTCAAGTACTTATATTTTTAGAAAGGATGTTTTTCT  199

seq1  ACTTTTGTTTTCTATTTATCCTTCCTTTTGGAGCCTTTTCTAGCAAAAAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTTTTCTATTTATCCTTCCTTTTGGAGCCTTTTCTAGCAAAAAG  249

seq1  AAATCTAGATGTAGCCTTGAACCCAAGACTAAAAAGTCTTTATTCAAAAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGATGTAGCCTTGAACCCAAGACTAAAAAGTCTTTATTCAAAAG  299

seq1  CTTTAAACTCACCGGGCATTGGTGGAGCACGCCTTTAATCCCAGCACTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACTCACCGGGCATTGGTGGAGCACGCCTTTAATCCCAGCACTCA  349

seq1  GGAGGCAGAGGCAGGTGGATTTCTGAGTCTGAGGCCAGCCTGGTCTACAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAGGTGGATTTCTGAGTCTGAGGCCAGCCTGGTCTACAG  399

seq1  AGTGAATGCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAA  449

seq1  AACAACCAACCAACCAAAAGCTTTAAACTCTTTGTATTTCCCTTCACATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAACCAACCAAAAGCTTTAAACTCTTTGTATTTCCCTTCACATT  499

seq1  TGTTTCTGATCGCCAACTGTGATAGCCAACAAGTCCATTCTTTATTTTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGATCGCCAACTGTGATAGCCAACAAGTCCATTCTTTATTTTTC  549

seq1  ACTATTGCTCTTCTATGTTCCCTTTTAAGGTAATTGAACATGAACATCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGCTCTTCTATGTTCCCTTTTAAGGTAATTGAACATGAACATCCA  599

seq1  GTAAATAAGATTTCCTTCATTGCTCGTGATGTGACAGACAACAGAGCATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAGATTTCCTTCATTGCTCGTGATGTGACAGACAACAGAGCATT  649

seq1  TGGTTATGTGTGTGGAGGTGAAGGCCAGCATCAATTTTTTGCTATAAAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATGTGTGTGGAGGTGAAGGCCAGCATCAATTTTTTGCTATAAAAA  699

seq1  CAGGGCAACAGGTAAGCTCTAAAGCATAATACACCTGAGAACTGGTTCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAACAGGTAAGCTCTAAAGCATAATACACCTGAGAACTGGTTCTC  749

seq1  TGTTGAGAGTAGAAGTGTTTGGGTTTTTTTGTTTTGTTTTTATTTTTGTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGAGTAGAAGTGTTTGGGTTTTTTTGTTTTGTTTTTATTTTTGTA  799

seq1  TTTGTTTTTTGAGACAGGCTTTCTCTGTATAGCCCTGACTGTCCTGGAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTGAGACAGGCTTTCTCTGTATAGCCCTGACTGTCCTGGAAT  849

seq1  TC  847
      ||
seq2  TC  851


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