BAC Information

Click to search

BAC

Clone NameB6Ng01-323E04
Chromosome15 (Build37)
Map Location 59,404,065 - 59,515,693
singlet/doubletdoublet
Overlap geneNsmce2, Trib1
Upstream geneEG631797, Tmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1, LOC100040330, EG268809, LOC665565, Sqle, E430025E21Rik
Downstream geneLOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832, LOC623094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323E04.bB6Ng01-323E04.g
ACCGA111889GA111890
length1,0801,059
definitionB6Ng01-323E04.b B6Ng01-323E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,404,065 - 59,405,159)(59,514,638 - 59,515,693)
sequence
gaattccatctcagtattaattctcgaaaataaaactgtattttaagatt
cttcatctgcggctctgccatccatgagaccgtgtttgactgttctattc
tttctgctttgatctccttagcagctgaatcagacttttggaatgagaca
gtcatggacttcttcatcattagttcttttttttttttccttttactatt
taatttagaattagagcaagatgataaaattagatacaagaggcctctgt
gtgtcatcaagtaacctagcctactttggataacagaaataaattcgcct
taaatacttgccagcttgtttgggccaacgttgttaagatgaatggcctt
tcagtcggtgctgtgtgagaagccatctctccctaagagttcttcctgac
aattaaaatttccctcttcttaatttcattccagcgctcctaattatgac
cctgtaattagcgtgctgattacatccctgtgcaatttctctgcctcctt
gatgttcacccttcatttatttttagtgtgcttcttctcttggcttctga
agcccctgcctacctgtcccccacggggcttctagctcagggctcaggga
agcaagggaagcttgccccatcacctccagttgcccctccagatttactt
gtttttgtcatgaacaccatgcgttatagctgacaaagagaattgcactc
tggggaactggagagctatggtatagccttgtccctctaccatgtggggg
gtgtctactcattgctgcatcagaatgatccagatctcccccaacactcc
attaggaattactcgcctgtgctcggcaccattacatcctcatagtggca
gttacctggaatcttcatggagttcctgaagcaaattcttgggagctttc
tcttcacactttctctttccttccttccattttctcatacccacttacca
gcaggctgtccactcaacagcatactgtcttctgtgtgtagacacagcac
cagatttagagttagacaccacagtttgagacgaaagacccacagcagtc
aggcctcttttgagaaacgttcccagagtc
gaattccaagaagacggagaaaatgagtttaaagaggagtcagactccag
gagttttgttgagtccatggctggaagcatcagtagattggatgtatgag
tgacagagttagatccatggtggaagtgtcagtagattgaatgaatgagt
gagtgatagttgggcccatgggtagaagtgtcagtagattgattgaatga
ttgacagaattatatccatgaatggaagcatcagtaactaaatgtatgag
cgacagagttggatccatggtggaagcgtcagtagattgaatgaatgagt
gatagagttgcgtccatggctagaaatatcagtagattggatgaatgcgt
gacagcgagaaaggttgggaggaaaataaccctggtgacgtgagaggcag
tgttggtattggtcactttcttccttgctgtggtaaagacaccagagaag
acacaatcggaaaggtttatcccaacttagtgttcaaggagatagagttc
aatatcgtgggagaggcatggcggcagggttaggaccagctggtcctgtt
tacattcagtcaggaagcaaagagagagatggaattagggttcgcttata
acttagtttctcttgttgctgttatgttaaaatgccctggcaaaagaaac
tccagtcaaaaagaagaagtttgttttagttcagtgccaggtttccctcc
attgccgctatcacatcagatccatatatgtgtgtcactatggtgccacc
cacgtttaaggcaagtcttactcaattaacctactctaggcaatcctgaa
cagatgtacccacggtgattctagatcttgtccaattgacaacaggaacc
atcatcacatggggtgggggggtaggcaagtgaggactcagtgtggcgga
tgggaatctgcccatagttctaacgggtactcacagcacgtgggacaaac
gtgttccactcaccaacatcacttcaccctctttcacccatggaaacccc
gatttcatgcagttcagaagagccagaacagcagacagctatgtgtctct
ctcctcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_59404065_59405159
seq2: B6Ng01-323E04.b_49_1128

seq1  GAATTCCATCTCAGTATTAATTCTCGAAAATAAAACTGTATTTTAAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCAGTATTAATTCTCGAAAATAAAACTGTATTTTAAGATT  50

seq1  CTTCATCTGCGGCTCTGCCATCCATGAGACCGTGTTTGACTGTTCTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTGCGGCTCTGCCATCCATGAGACCGTGTTTGACTGTTCTATTC  100

seq1  TTTCTGCTTTGATCTCCTTAGCAGCTGAATCAGACTTTTGGAATGAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTTTGATCTCCTTAGCAGCTGAATCAGACTTTTGGAATGAGACA  150

seq1  GTCATGGACTTCTTCATCATTAGTTCTTTTTTTTTTTTCCTTTTACTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGACTTCTTCATCATTAGTTCTTTTTTTTTTTTCCTTTTACTATT  200

seq1  TAATTTAGAATTAGAGCAAGATGATAAAATTAGATACAAGAGGCCTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAGAATTAGAGCAAGATGATAAAATTAGATACAAGAGGCCTCTGT  250

seq1  GTGTCATCAAGTAACCTAGCCTACTTTGGATAACAGAAATAAATTCGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATCAAGTAACCTAGCCTACTTTGGATAACAGAAATAAATTCGCCT  300

seq1  TAAATACTTGCCAGCTTGTTTGGGCCAACGTTGTTAAGATGAATGGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTTGCCAGCTTGTTTGGGCCAACGTTGTTAAGATGAATGGCCTT  350

seq1  TCAGTCGGTGCTGTGTGAGAAGCCATCTCTCCCTAAGAGTTCTTCCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCGGTGCTGTGTGAGAAGCCATCTCTCCCTAAGAGTTCTTCCTGAC  400

seq1  AATTAAAATTTCCCTCTTCTTAATTTCATTCCAGCGCTCCTAATTATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATTTCCCTCTTCTTAATTTCATTCCAGCGCTCCTAATTATGAC  450

seq1  CCTGTAATTAGCGTGCTGATTACATCCCTGTGCAATTTCTCTGCCTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAATTAGCGTGCTGATTACATCCCTGTGCAATTTCTCTGCCTCCTT  500

seq1  GATGTTCACCCTTCATTTATTTTTAGTGTGCTTCTTCTCTTGGCTTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCACCCTTCATTTATTTTTAGTGTGCTTCTTCTCTTGGCTTCTGA  550

seq1  AGCCCCTGCCTACCTGTCCCCCACGGGGCTTCTAGCTCAGGGCTCAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGCCTACCTGTCCCCCACGGGGCTTCTAGCTCAGGGCTCAGGGA  600

seq1  AGCAAGGGAAGCTTGCCCCATCACCTCCAGTTGCCCCTCCAGATTTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGGAAGCTTGCCCCATCACCTCCAGTTGCCCCTCCAGATTTACTT  650

seq1  GTTTTTGTCATGAACACCATGCGTTATAGCTGACAAAGAGAATTGCACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTCATGAACACCATGCGTTATAGCTGACAAAGAGAATTGCACTC  700

seq1  TGGGGAACTGGAGAGCTATGGTATAGCCTTGTCCCTCTACCATGTGGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAACTGGAGAGCTATGGTATAGCCTTGTCCCTCTACCATGTGGGGG  750

seq1  GTGTCTACTCATTGCTGCATCAGAATGATCCAGATCTCCCCCAACACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTACTCATTGCTGCATCAGAATGATCCAGATCTCCCCCAACACTCC  800

seq1  ATTAGGAATTACTCGCCTGTGCTCGGCACCATTACATCCTCATAGTGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAATTACTCGCCTGTGCTCGGCACCATTACATCCTCATAGTGGCA  850

seq1  GTTACCTGGAATCTTCATGGAGTTCCTGAAGCAAATTCTTGGGAGCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTGGAATCTTCATGGAGTTCCTGAAGCAAATTCTTGGGAGCTTTC  900

seq1  TCTTCACACTTTCTCTTTCCTTCCTTCCATTTTCTCATACCCACTTACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACACTTTCTCTTTCCTTCCTTCCATTTTCTCATACCCACTTACCA  950

seq1  GCAGGCTGTCCACTCAACAGCAATACTGTCTTCTGTGGTGTAGGACCACA  1000
      ||||||||||||||||||||| |||||||||||||| ||||||   ||||
seq2  GCAGGCTGTCCACTCAACAGC-ATACTGTCTTCTGT-GTGTAG--ACACA  996

seq1  GGCACCCAGATTTAAGAGTTAGACACCCACAGGTTTGAAGACAGAAAGAC  1050
       ||| |||||||| ||||||||||| ||||| ||||| |||| |||||||
seq2  -GCA-CCAGATTT-AGAGTTAGACA-CCACA-GTTTG-AGAC-GAAAGAC  1039

seq1  ACACCAGCCAGTCAGCCTCTTTTTTGAGAAACCGTCCCCAGAGTC  1095
       || ||| ||||||| | || |||||||||| ||| |||||||||
seq2  CCA-CAG-CAGTCAGGC-CTCTTTTGAGAAA-CGTTCCCAGAGTC  1080

seq1: chr15_59514638_59515693
seq2: B6Ng01-323E04.g_67_1125 (reverse)

seq1  GATGA-GAGAGAGACACATTAGCTGTTTGCTGTTCTGGGCTATTCTGAA-  48
      ||||| |||||||||||| ||||||| ||||||||| |||| ||||||| 
seq2  GATGAGGAGAGAGACACA-TAGCTGTCTGCTGTTCT-GGCTCTTCTGAAC  48

seq1  TGAATG-AATC-GGGTTTCCAT-GGTGAAAGAGGGTGAAGTGGATGTTGG  95
      || ||| |||| |||||||||| |||||||||||||||||| |||||| |
seq2  TGCATGAAATCGGGGTTTCCATGGGTGAAAGAGGGTGAAGT-GATGTT-G  96

seq1  GTGAGT-GAACACGTTTGTCCACCGTGCTCTGAGTTCCCGTTAGAACTAT  144
      |||||| ||||||||||||||  |||||| ||||| ||||||||||||||
seq2  GTGAGTGGAACACGTTTGTCCCACGTGCTGTGAGTACCCGTTAGAACTAT  146

seq1  GGGCAGATTCCCATCCGCCACACTGAGTCCTCACTTGCCTA-CCCCCCAC  193
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGGCAGATTCCCATCCGCCACACTGAGTCCTCACTTGCCTACCCCCCCAC  196

seq1  CCCATGTGATGATGGTTCCTGTTGTCAATTGGACAAGATCTAGAATCACC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGATGATGGTTCCTGTTGTCAATTGGACAAGATCTAGAATCACC  246

seq1  GTGGGTACATCTGTTCAGGATTGCCTAGAGTAGGTTAATTGAGTAAGACT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTACATCTGTTCAGGATTGCCTAGAGTAGGTTAATTGAGTAAGACT  296

seq1  TGCCTTAAACGTGGGTGGCACCATAGTGACACACATATATGGATCTGATG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAAACGTGGGTGGCACCATAGTGACACACATATATGGATCTGATG  346

seq1  TGATAGCGGCAATGGAGGGAAACCTGGCACTGAACTAAAACAAACTTCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCGGCAATGGAGGGAAACCTGGCACTGAACTAAAACAAACTTCTT  396

seq1  CTTTTTGACTGGAGTTTCTTTTGCCAGGGCATTTTAACATAACAGCAACA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGACTGGAGTTTCTTTTGCCAGGGCATTTTAACATAACAGCAACA  446

seq1  AGAGAAACTAAGTTATAAGCGAACCCTAATTCCATCTCTCTCTTTGCTTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACTAAGTTATAAGCGAACCCTAATTCCATCTCTCTCTTTGCTTC  496

seq1  CTGACTGAATGTAAACAGGACCAGCTGGTCCTAACCCTGCCGCCATGCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGAATGTAAACAGGACCAGCTGGTCCTAACCCTGCCGCCATGCCT  546

seq1  CTCCCACGATATTGAACTCTATCTCCTTGAACACTAAGTTGGGATAAACC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACGATATTGAACTCTATCTCCTTGAACACTAAGTTGGGATAAACC  596

seq1  TTTCCGATTGTGTCTTCTCTGGTGTCTTTACCACAGCAAGGAAGAAAGTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGATTGTGTCTTCTCTGGTGTCTTTACCACAGCAAGGAAGAAAGTG  646

seq1  ACCAATACCAACACTGCCTCTCACGTCACCAGGGTTATTTTCCTCCCAAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACCAACACTGCCTCTCACGTCACCAGGGTTATTTTCCTCCCAAC  696

seq1  CTTTCTCGCTGTCACGCATTCATCCAATCTACTGATATTTCTAGCCATGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCGCTGTCACGCATTCATCCAATCTACTGATATTTCTAGCCATGG  746

seq1  ACGCAACTCTATCACTCATTCATTCAATCTACTGACGCTTCCACCATGGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAACTCTATCACTCATTCATTCAATCTACTGACGCTTCCACCATGGA  796

seq1  TCCAACTCTGTCGCTCATACATTTAGTTACTGATGCTTCCATTCATGGAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTCTGTCGCTCATACATTTAGTTACTGATGCTTCCATTCATGGAT  846

seq1  ATAATTCTGTCAATCATTCAATCAATCTACTGACACTTCTACCCATGGGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTGTCAATCATTCAATCAATCTACTGACACTTCTACCCATGGGC  896

seq1  CCAACTATCACTCACTCATTCATTCAATCTACTGACACTTCCACCATGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTATCACTCACTCATTCATTCAATCTACTGACACTTCCACCATGGA  946

seq1  TCTAACTCTGTCACTCATACATCCAATCTACTGATGCTTCCAGCCATGGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCTGTCACTCATACATCCAATCTACTGATGCTTCCAGCCATGGA  996

seq1  CTCAACAAAACTCCTGGAGTCTGACTCCTCTTTAAACTCATTTTCTCCGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAAAACTCCTGGAGTCTGACTCCTCTTTAAACTCATTTTCTCCGT  1046

seq1  CTTCTTGGAATTC  1056
      |||||||||||||
seq2  CTTCTTGGAATTC  1059