BAC Information

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BAC

Clone NameB6Ng01-323I21
Chromosome15 (Build37)
Map Location 65,759,303 - 65,901,704
singlet/doubletdoublet
Overlap geneF930104E18Rik, LOC100040835, Kcnq3
Upstream geneLOC268812, LOC100040790, LOC665836, C920006C10Rik, Oc90
Downstream geneLrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323I21.bB6Ng01-323I21.g
ACCGA112101GA112102
length1,1041,029
definitionB6Ng01-323I21.b B6Ng01-323I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,900,588 - 65,901,704)(65,759,303 - 65,760,351)
sequence
gaattccaaatgtttgtaaagattatgcgtggtgtgacatgaaaagatct
ctattctttttcataacttcctcatatctcgatcctctccttccatgatg
gttttcttcctgctgttactagacttttgttgttaaaattatggcctggc
agcattcatctgctcatttagcagaagcttcctgtatggcttccatgtac
caggtgctgtttgaggccctaatgataaaatgcaaagtgggctgctattt
atcaatctcttgttcttccaccatgagggttacatctgtgctatgctttg
tcaggtgtgttcaggatgcaacagctagagtctattcatttcttcatctt
gtgcctcttctgtgggtcccacctataccaaggctacatggaggagatat
ttagcctctccggaaaaagtgtacaggtacaggaaagtgtgtggtcattt
gataggattcataaaaatcccttcatttaggtttcagagctaagactcac
ttcacaaggtctttgcaccctctattaaaagcatgctcacaaactcacac
ttggctaagcaaattaataacataaacaaggctgaaaattttaacttcct
tagagcaaattgcttgtcaaagagattggcaaagccatttgcatgaaaac
acttaataagctgtctttgaaacatccttaccaccttattggaacaggct
tgaagaaacccctctttgatagcttgcttggaatctgcccaggagttaca
aagcccatgagatgcacaaacatggaatagtttagacacttggtattctt
agaggctttccccctactgaggagatattcaagaatcttctttaaatgtg
ttgctacagaccagccttggggaaatgaagattactgtatacataggtga
tgtgaggttagttttaaccgttgatgtaatacaacctagagtcatctgga
gaagtataatatgagttatctgatcaggttagcctgccacatatctttgg
gatttgttctgatggtatgtccagcttatggtgggtagcaccatttgaaa
gacaagggtcctgacagctagagccagagaaagcagttgagtattggagg
agca
acagaggcccttctcagtccctaggaatgtcaatcttctcacttccatgg
ctttgcttatgccaaggctctgcaggagtacatgcttagcagcatcttgt
cagaaagtactttctcacttgggtccatgcatgacttcttcagctgaaag
gattctcctcctcactagctgtacaaagtgctgattgtttcttcactcaa
gaactgtataatgctcttcctttaatagtcatttgtagtgtgtgtgtgcg
cacatgccacatcttaaaagaggtaatacaaaaatataaaatgatcacag
atattggaactaggcatatatggtttccaaatccagcctcttgtctgtag
gacacaccagaatcctttaatgaagatagcattatctaccttcaagaatt
attggacagataaattgagatagccctaactctaggccttgcacatagta
ggagctcaatatatgttcactgaagagataattgaatgattaataaaaac
ttttttttttaactaaaagagctgatgattttattttcacatttcacaat
ataagtgaaaactgcacttttttgtattatttctccctccaaaaatattc
agttaggaagggaagtttcctttccatgcatctagtaaacactcgggctc
agcaccaagagctcctggtggaacagaacaagaaatacaaaaccatcaag
agcgcttctgctcttatctgtctggccgggtcatgccaggccgggtgggc
accatcttagggcgggcaggaggtctcatcatgggaggtccgggcatcat
gggcatgtggcctcccatgggtggtctcatcccaggagctggtcccacgg
gcatcattcccgggcggaggggcccatcattggcatcatggagggcctcc
catgtgggcgcagcatcatgccagccgagaggcagggagactgggggagt
gggatcattgccctgcagcggagacagagaacgatcggagggatctcctt
gatgaatgcagccgtgcctagtcaatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_65900588_65901704
seq2: B6Ng01-323I21.b_45_1148 (reverse)

seq1  TGCTCCT-CAATACTCAACTGCTTTCTCT-GCTCTTAAACTGTTCAGGAC  48
      ||||||| ||||||||||||||||||||| |||||  | ||| |||||| 
seq2  TGCTCCTCCAATACTCAACTGCTTTCTCTGGCTCT--AGCTG-TCAGGA-  46

seq1  CCCTTGTCTATCAAATGGTGCTACCCACCATAAGCTGGGACAATTACCAA  98
      ||||||||| |||||||||||||||||||||||||| |||||  |||| |
seq2  CCCTTGTCTTTCAAATGGTGCTACCCACCATAAGCT-GGACA--TACC-A  92

seq1  TCAAGACAAATCCCCAAAGATATGTTGGCAGGCTAACCTGATTCAGATAA  148
      |||  |||||| |||||||||||| |||||||||||||||| ||||||||
seq2  TCAGAACAAAT-CCCAAAGATATG-TGGCAGGCTAACCTGA-TCAGATAA  139

seq1  CTCATTATTATTACTTCTTCCCAGATGACTCTAGGTTGTATTACATCAAC  198
      |||| ||||| |||||||  ||||||||||||||||||||||||||||||
seq2  CTCA-TATTA-TACTTCT--CCAGATGACTCTAGGTTGTATTACATCAAC  185

seq1  GGTTAAAACTAACCTCACATCACCTATGTATACAGTAATCTTCATTTCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAACTAACCTCACATCACCTATGTATACAGTAATCTTCATTTCCC  235

seq1  CAAGGCTGGTCTGTAGCAACACATTTAAAGAAGATTCTTGAATATCTCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGTCTGTAGCAACACATTTAAAGAAGATTCTTGAATATCTCCT  285

seq1  CAGTAGGGGGAAAGCCTCTAAGAATACCAAGTGTCTAAACTATTCCATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGGGGAAAGCCTCTAAGAATACCAAGTGTCTAAACTATTCCATGT  335

seq1  TTGTGCATCTCATGGGCTTTGTAACTCCTGGGCAGATTCCAAGCAAGCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATCTCATGGGCTTTGTAACTCCTGGGCAGATTCCAAGCAAGCTA  385

seq1  TCAAAGAGGGGTTTCTTCAAGCCTGTTCCAATAAGGTGGTAAGGATGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGGGGTTTCTTCAAGCCTGTTCCAATAAGGTGGTAAGGATGTTT  435

seq1  CAAAGACAGCTTATTAAGTGTTTTCATGCAAATGGCTTTGCCAATCTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAGCTTATTAAGTGTTTTCATGCAAATGGCTTTGCCAATCTCTT  485

seq1  TGACAAGCAATTTGCTCTAAGGAAGTTAAAATTTTCAGCCTTGTTTATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCAATTTGCTCTAAGGAAGTTAAAATTTTCAGCCTTGTTTATGT  535

seq1  TATTAATTTGCTTAGCCAAGTGTGAGTTTGTGAGCATGCTTTTAATAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTGCTTAGCCAAGTGTGAGTTTGTGAGCATGCTTTTAATAGAG  585

seq1  GGTGCAAAGACCTTGTGAAGTGAGTCTTAGCTCTGAAACCTAAATGAAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAAGACCTTGTGAAGTGAGTCTTAGCTCTGAAACCTAAATGAAGG  635

seq1  GATTTTTATGAATCCTATCAAATGACCACACACTTTCCTGTACCTGTACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTATGAATCCTATCAAATGACCACACACTTTCCTGTACCTGTACA  685

seq1  CTTTTTCCGGAGAGGCTAAATATCTCCTCCATGTAGCCTTGGTATAGGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCGGAGAGGCTAAATATCTCCTCCATGTAGCCTTGGTATAGGTG  735

seq1  GGACCCACAGAAGAGGCACAAGATGAAGAAATGAATAGACTCTAGCTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCACAGAAGAGGCACAAGATGAAGAAATGAATAGACTCTAGCTGTT  785

seq1  GCATCCTGAACACACCTGACAAAGCATAGCACAGATGTAACCCTCATGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGAACACACCTGACAAAGCATAGCACAGATGTAACCCTCATGGT  835

seq1  GGAAGAACAAGAGATTGATAAATAGCAGCCCACTTTGCATTTTATCATTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACAAGAGATTGATAAATAGCAGCCCACTTTGCATTTTATCATTA  885

seq1  GGGCCTCAAACAGCACCTGGTACATGGAAGCCATACAGGAAGCTTCTGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCAAACAGCACCTGGTACATGGAAGCCATACAGGAAGCTTCTGCT  935

seq1  AAATGAGCAGATGAATGCTGCCAGGCCATAATTTTAACAACAAAAGTCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCAGATGAATGCTGCCAGGCCATAATTTTAACAACAAAAGTCTA  985

seq1  GTAACAGCAGGAAGAAAACCATCATGGAAGGAGAGGATCGAGATATGAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGCAGGAAGAAAACCATCATGGAAGGAGAGGATCGAGATATGAGG  1035

seq1  AAGTTATGAAAAAGAATAGAGATCTTTTCATGTCACACCACGCATAATCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGAAAAAGAATAGAGATCTTTTCATGTCACACCACGCATAATCT  1085

seq1  TTACAAACATTTGGAATTC  1117
      |||||||||||||||||||
seq2  TTACAAACATTTGGAATTC  1104

seq1: chr15_65759303_65760351
seq2: B6Ng01-323I21.g_75_1103

seq1  ACAGAGGCCCTTCTCAGTCCCTAGGAATGTCAATCTTCTCACTTCCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCCCTTCTCAGTCCCTAGGAATGTCAATCTTCTCACTTCCATGG  50

seq1  CTTTGCTTATGCCAAGGCTCTGCAGGAGTACATGCTTAGCAGCATCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTATGCCAAGGCTCTGCAGGAGTACATGCTTAGCAGCATCTTGT  100

seq1  CAGAAAGTACTTTCTCACTTGGGTCCATGCATGACTTCTTCAGCTGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTACTTTCTCACTTGGGTCCATGCATGACTTCTTCAGCTGAAAG  150

seq1  GATTCTCCTCCTCACTAGCTGTACAAAGTGCTGATTGTTTCTTCACTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCCTCCTCACTAGCTGTACAAAGTGCTGATTGTTTCTTCACTCAA  200

seq1  GAACTGTATAATGCTCTTCCTTTAATAGTCATTTGTAGTGTGTGTGTGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTATAATGCTCTTCCTTTAATAGTCATTTGTAGTGTGTGTGTGCG  250

seq1  CACATGCCACATCTTAAAAGAGGTAATACAAAAATATAAAATGATCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCACATCTTAAAAGAGGTAATACAAAAATATAAAATGATCACAG  300

seq1  ATATTGGAACTAGGCATATATGGTTTCCAAATCCAGCCTCTTGTCTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGAACTAGGCATATATGGTTTCCAAATCCAGCCTCTTGTCTGTAG  350

seq1  GACACACCAGAATCCTTTAATGAAGATAGCATTATCTACCTTCAAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACCAGAATCCTTTAATGAAGATAGCATTATCTACCTTCAAGAATT  400

seq1  ATTGGACAGATAAATTGAGATAGCCCTAACTCTAGGCCTTGCACATAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACAGATAAATTGAGATAGCCCTAACTCTAGGCCTTGCACATAGTA  450

seq1  GGAGCTCAATATATGTTCACTGAAGAGATAATTGAATGATTAATAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCAATATATGTTCACTGAAGAGATAATTGAATGATTAATAAAAAC  500

seq1  TTTTTTTTTTAACTAAAAGAGCTGATGATTTTATTTTCACATTTCACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAACTAAAAGAGCTGATGATTTTATTTTCACATTTCACAAT  550

seq1  ATAAGTGAAAACTGCACTTTTTTGTATTATTTCTCCCTCCAAAAATATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGAAAACTGCACTTTTTTGTATTATTTCTCCCTCCAAAAATATTC  600

seq1  AGTTAGGAAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGAAGGGAAGTTTCCTTTCCATGCATCTAGTAAACACTCGGGCTC  650

seq1  AGCACCAAGAGCTCCTGGTGGAACAGAACAAGAAATACAAAACCATCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAAGAGCTCCTGGTGGAACAGAACAAGAAATACAAAACCATCAAG  700

seq1  AGCGCTTCTGCTCTTATCTGTCTGGCCGGGTCATGCCAGGCCGGGTGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTTCTGCTCTTATCTGTCTGGCCGGGTCATGCCAGGCCGGGTGGGC  750

seq1  ACCATCTTAGGGCGGGCAGGAGGTCTCATCATGGGAGGTCCGGGCATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTAGGGCGGGCAGGAGGTCTCATCATGGGAGGTCCGGGCATCAT  800

seq1  GGGCATGTGGCCTCCCATGGGTGGTCTCATCCCAGGAGCTGGTCCCACGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGTGGCCTCCCATGGGTGGTCTCATCCCAGGAGCTGGTCCCACGG  850

seq1  GCATCATT-CCGGGCGGAGGGGGGCCCATCATTGGCATCATGGGAGGGCC  899
      |||||||| |||||||||  ||||||||||||||||||||| ||||||||
seq2  GCATCATTCCCGGGCGGA--GGGGCCCATCATTGGCATCAT-GGAGGGCC  897

seq1  TCCCATGTGGGGCGCAGGCATCATGCCAGGCCGAGGAGGGCCAGGGAGAC  949
      |||||||| ||||||| ||||||||||| ||||| ||||  |||||||||
seq2  TCCCATGT-GGGCGCA-GCATCATGCCA-GCCGA-GAGG--CAGGGAGAC  941

seq1  TGGGGGGAGGTGGGATCATGGCCCCTGCAGGCGGAGGAGCAGAGAACGGA  999
      ||||||   |||||||||| | ||||||| ||||||   |||||||| ||
seq2  TGGGGG--AGTGGGATCATTG-CCCTGCA-GCGGAG--ACAGAGAAC-GA  984

seq1  GCGGGAGGGATCTTCCCTTGTTGAAATGCAGCCGTTGTCTTGTCAATCAG  1049
       | ||||||||||  ||||| || |||||||||| || || |||||||||
seq2  TC-GGAGGGATCT--CCTTGATG-AATGCAGCCG-TGCCTAGTCAATCAG  1029