BAC Information

Click to search

BAC

Clone NameB6Ng01-325H01
Chromosome15 (Build37)
Map Location 59,424,876 - 59,562,373
singlet/doubletdoublet
Overlap geneNsmce2, Trib1
Upstream geneEG631797, Tmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1, LOC100040330, EG268809, LOC665565, Sqle, E430025E21Rik
Downstream geneLOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832, LOC623094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325H01.bB6Ng01-325H01.g
ACCGA113499GA113500
length829876
definitionB6Ng01-325H01.b B6Ng01-325H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,561,513 - 59,562,373)(59,424,876 - 59,425,810)
sequence
gaattcagatgttgagacgtggattctgatcttggctcgtctccttgtcc
ctcaagcctatctgatggagtggacaatacagtttgcaacctgatttcca
gtactgtaagtcctctgctctgtgagctccttttcttccctctcaccctt
ctgattgccccagggtggcccattacccactgctcttgttaattttttct
gaatgtttggtccagaaacagagtccacaaaaacctaactgagtttgaag
tgttcttactactactactgtgaagaggatgacttcaacactccgtggta
caaacaacctcccccctttattttgttactggttttgtgggccaagaatt
cagagctaaaagtccttgctctagggaggggcatgcctcatgaagatgga
ctgtatccatctgaatgccgatgaatgactgggcttcccggatacatcca
atctcagtccgggatgctggcagctaaggctgcctctggtgaggcggtca
gagaaacctctacagtatggctgtcttgaggctgtcagccctcttacctg
catttcggagtgatagaagaaaaccatgtaggagttctgtgggcttttga
gagactagggcctcaaagagccaagcctctgctgtcttctatgaatctga
ctcacagagaccagctcggattcaaaggaagggaacactggccttaccta
tcattgaaaggtgggccaaaaaatgtacagagttatcctaaaatgatcct
accctgtcccatgaaccccctcccacagtgccctttgagcacaactgcga
agggaaagggaagggaagggaagggaagg
gaattcccctcctctccccatgtgggtgtggactgagagctagcaactga
ggactagagagagatagctccttggccattcagtcaagtaattttcagta
tttactctagaagacaaatgggtttgcagccattaggctacaaatataaa
aaccattagttcatttctatgttttgcatttctgccttagaatccaaatc
ctgtatttccctaatgaccttgacattttaccaacaagcatcgttttgtt
tctggacttccaagccttccttctctactaatttttaacctgtgttcctt
ctctgacaaaccagaaagggtcaacataattcctaagagtgcttgctagt
ttgctgtccttggcagctcctctttctgacagtgtgtgatactctcctga
agttggggctggaaagggcagggactaatacaaagcatgtttcagtttcc
taccagcagccccgggtcggtgcagggtgttcccacacttagatggcttt
tctcacgtacagctctgacttcctaatgcccattgtccatttggaactac
acacaatacttacaagcatttaagtggtacttgacatctaaggaaacgtt
ctcttctctccctgtcatgtttccataacctggggggcagatacctgaaa
atgttcatagactaataataaccattaagtctgagaggaggaaagcttta
caaagatgacattgttaccaggccttaagaaataaaggaacataccgggg
aatggtgaaggggctttaggagccaggcctcttgagtttccattgtaatc
tctttttactaggtcaaatccccttttctccttctatgtgtatgtgatgt
gtttgcatgtgtgtaattgtgtgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_59561513_59562373
seq2: B6Ng01-325H01.b_48_876 (reverse)

seq1  CCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTC  50
                                    ||||||||||||||||||||
seq2  ------------------------------CCTTCCCTTCCCTTCCCTTC  20

seq1  CCTTCCCTTCCCTTCGCAGTTGTGCTC-AAGGGCACTGTGGGAGGGGGTT  99
      |||    |||||||||||||||||||| ||||||||||||||||||||||
seq2  CCT----TTCCCTTCGCAGTTGTGCTCAAAGGGCACTGTGGGAGGGGGTT  66

seq1  CAT-GGACAGGGTAGGATCATTTTAGGATAACTCTGTACATTTTTTGGCC  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGACAGGGTAGGATCATTTTAGGATAACTCTGTACATTTTTTGGCC  116

seq1  CACCTTTCAATGATAGGTAAGGCCAGTGTTCCCTTCCTTTGAATCCGAGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCAATGATAGGTAAGGCCAGTGTTCCCTTCCTTTGAATCCGAGC  166

seq1  TGGTCTCTGTGAGTCAGATTCATAGAAGACAGCAGAGGCTTGGCTCTTTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTGTGAGTCAGATTCATAGAAGACAGCAGAGGCTTGGCTCTTTG  216

seq1  AGGCCCTAGTCTCTCAAAAGCCCACAGAACTCCTACATGGTTTTCTTCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTAGTCTCTCAAAAGCCCACAGAACTCCTACATGGTTTTCTTCTA  266

seq1  TCACTCCGAAATGCAGGTAAGAGGGCTGACAGCCTCAAGACAGCCATACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCGAAATGCAGGTAAGAGGGCTGACAGCCTCAAGACAGCCATACT  316

seq1  GTAGAGGTTTCTCTGACCGCCTCACCAGAGGCAGCCTTAGCTGCCAGCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGTTTCTCTGACCGCCTCACCAGAGGCAGCCTTAGCTGCCAGCAT  366

seq1  CCCGGACTGAGATTGGATGTATCCGGGAAGCCCAGTCATTCATCGGCATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGACTGAGATTGGATGTATCCGGGAAGCCCAGTCATTCATCGGCATT  416

seq1  CAGATGGATACAGTCCATCTTCATGAGGCATGCCCCTCCCTAGAGCAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGATACAGTCCATCTTCATGAGGCATGCCCCTCCCTAGAGCAAGG  466

seq1  ACTTTTAGCTCTGAATTCTTGGCCCACAAAACCAGTAACAAAATAAAGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGCTCTGAATTCTTGGCCCACAAAACCAGTAACAAAATAAAGGG  516

seq1  GGGAGGTTGTTTGTACCACGGAGTGTTGAAGTCATCCTCTTCACAGTAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTTGTTTGTACCACGGAGTGTTGAAGTCATCCTCTTCACAGTAGT  566

seq1  AGTAGTAAGAACACTTCAAACTCAGTTAGGTTTTTGTGGACTCTGTTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAAGAACACTTCAAACTCAGTTAGGTTTTTGTGGACTCTGTTTCT  616

seq1  GGACCAAACATTCAGAAAAAATTAACAAGAGCAGTGGGTAATGGGCCACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAACATTCAGAAAAAATTAACAAGAGCAGTGGGTAATGGGCCACC  666

seq1  CTGGGGCAATCAGAAGGGTGAGAGGGAAGAAAAGGAGCTCACAGAGCAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCAATCAGAAGGGTGAGAGGGAAGAAAAGGAGCTCACAGAGCAGA  716

seq1  GGACTTACAGTACTGGAAATCAGGTTGCAAACTGTATTGTCCACTCCATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTACAGTACTGGAAATCAGGTTGCAAACTGTATTGTCCACTCCATC  766

seq1  AGATAGGCTTGAGGGACAAGGAGACGAGCCAAGATCAGAATCCACGTCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGCTTGAGGGACAAGGAGACGAGCCAAGATCAGAATCCACGTCTC  816

seq1  AACATCTGAATTC  861
      |||||||||||||
seq2  AACATCTGAATTC  829

seq1: chr15_59424876_59425810
seq2: B6Ng01-325H01.g_72_947

seq1  GAATTCCCCTCCTCTCCCCATGTGGGTGTGGACTGAGAGCTAGCAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTCCTCTCCCCATGTGGGTGTGGACTGAGAGCTAGCAACTGA  50

seq1  GGACTAGAGAGAGATAGCTCCTTGGCCATTCAGTCAAGTAATTTTCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGAGAGAGATAGCTCCTTGGCCATTCAGTCAAGTAATTTTCAGTA  100

seq1  TTTACTCTAGAAGACAAATGGGTTTGCAGCCATTAGGCTACAAATATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTAGAAGACAAATGGGTTTGCAGCCATTAGGCTACAAATATAAA  150

seq1  AACCATTAGTTCATTTCTATGTTTTGCATTTCTGCCTTAGAATCCAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTAGTTCATTTCTATGTTTTGCATTTCTGCCTTAGAATCCAAATC  200

seq1  CTGTATTTCCCTAATGACCTTGACATTTTACCAACAAGCATCGTTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTCCCTAATGACCTTGACATTTTACCAACAAGCATCGTTTTGTT  250

seq1  TCTGGACTTCCAAGCCTTCCTTCTCTACTAATTTTTAACCTGTGTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTTCCAAGCCTTCCTTCTCTACTAATTTTTAACCTGTGTTCCTT  300

seq1  CTCTGACAAACCAGAAAGGGTCAACATAATTCCTAAGAGTGCTTGCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACAAACCAGAAAGGGTCAACATAATTCCTAAGAGTGCTTGCTAGT  350

seq1  TTGCTGTCCTTGGCAGCTCCTCTTTCTGACAGTGTGTGATACTCTCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCCTTGGCAGCTCCTCTTTCTGACAGTGTGTGATACTCTCCTGA  400

seq1  AGTTGGGGCTGGAAAGGGCAGGGACTAATACAAAGCATGTTTCAGTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGCTGGAAAGGGCAGGGACTAATACAAAGCATGTTTCAGTTTCC  450

seq1  TACCAGCAGCCCCGGGTCGGTGCAGGGTGTTCCCACACTTAGATGGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCAGCCCCGGGTCGGTGCAGGGTGTTCCCACACTTAGATGGCTTT  500

seq1  TCTCACGTACAGCTCTGACTTCCTAATGCCCATTGTCCATTTGGAACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACGTACAGCTCTGACTTCCTAATGCCCATTGTCCATTTGGAACTAC  550

seq1  ACACAATACTTACAAGCATTTAAGTGGTACTTGACATCTAAGGAAACGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATACTTACAAGCATTTAAGTGGTACTTGACATCTAAGGAAACGTT  600

seq1  CTCTTCTCTCCCTGTCATGTTTCCATAACCTGGGGGGCAGATACCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCTCCCTGTCATGTTTCCATAACCTGGGGGGCAGATACCTGAAA  650

seq1  ATGTTCATAGACTAATAATAACCATTAAGTCTGAGAGGAGGAAAGCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATAGACTAATAATAACCATTAAGTCTGAGAGGAGGAAAGCTTTA  700

seq1  CAAAGATGACATTGTTACCAGGCCTTAAGAAATAAAGGAACATACCGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGACATTGTTACCAGGCCTTAAGAAATAAAGGAACATACCGGGG  750

seq1  AATGGTGAAGGGGCTTTAGGAGCCAGGCCTCTTGAAGTTTTCCATTGTAA  800
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  AATGGTGAAGGGGCTTTAGGAGCCAGGCCTCTTGA--GTTTCCATTGTAA  798

seq1  TCTCTTTTTACTAGGTCAAATCCCCCTTTTCTTCTTTCTATGTGTATGTG  850
      ||||||||||||||||||||| ||||||||| || |||||||||||||||
seq2  TCTCTTTTTACTAGGTCAAAT-CCCCTTTTC-TCCTTCTATGTGTATGTG  846

seq1  ATGTGTTTGCATGTGTGTATATGTGTGTTCATATGTATGGGTGCACATGT  900
      |||||||||||||||||||  |||||||||                    
seq2  ATGTGTTTGCATGTGTGTAATTGTGTGTTC--------------------  876

seq1  GAAGGTGGTATGGTATGCATACACATTGTGTGTTC  935
                                         
seq2  -----------------------------------  876