BAC Information

Click to search

BAC

Clone NameB6Ng01-325J12
Chromosome15 (Build37)
Map Location 33,375,171 - 33,376,135
singlet/doubletsinglet
Overlap genePgcp
Upstream geneSema5a, LOC100040962, Sdc2, 1700084J12Rik
Downstream geneTspyl5, LOC675463, Mtdh, Laptm4b, Matn2, Rpl30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325J12.bB6Ng01-325J12.g
ACCGA113613GA113614
length1,1141,171
definitionB6Ng01-325J12.b B6Ng01-325J12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcctgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccat
tttctcctctataagtttcagtgtctctggttttatgtgaagctccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccattcacagcactcttgactgta
atagtatcttgatttttaagaagcctatggctttttttttttttttgatg
ttgggcattcattttgttgatgactttaactggatgttaggcttactcac
ttcctagattcatctttagtctctctggagttcagttccctgtagcttaa
gcacatctggaaccatgcatttggaaggtatcattcttttctgtttccta
catatccaaaatcagtagcaatttttagacccaatgattcaacattgtgt
tatttccattgctctgaaatatggaagttctcatcatctttggtcatcct
caatgaccaaaactttcctcaaactaatagaaactctgtctctttgggaa
tagacagtttcagctggtgtttgaaggtactaacagggacctctgagtaa
taggatgtgtgcaaacttgctagagtaaataaaacacttccctgaataga
aacgaaaaccagggctgtcagtattggccatgccttgaatgtggcttatc
attggaaaggcagg

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccttgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gtttatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgatcagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctcctttagaagtggga
acaaaacacccttggaaggagttacagagacaaagtttggagccgagatg
aaaggatggaccatgtagagactgccttatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagattttatcgaa
aggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgctccacagtcagctaattgatagattacagggctcc
aattggagagctagagaagtacccaaggagctaaagggatcttgcaccgc
tatagtggatcaacatatgaacttaaccagtacccgggagctcttgacct
ctagcttgcatatgtatcaaaagatgccctagtcggcccatcactgggaa
aggaaggcccattgacatcaacttttatattgccctgaacagtgatcgca
ggccaataatggatgattgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_33375171_33376135
seq2: B6Ng01-325J12.b_192_1157

seq1  CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT  50

seq1  CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG  100

seq1  TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCC  150

seq1  ATTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGCTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGCTCCTT  200

seq1  GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC  250

seq1  GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA  300

seq1  ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA  350

seq1  GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT  400

seq1  GGTCTACTTGTCTGTCTCTATACCAGTACCATTCACAGCACTCTTGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACTTGTCTGTCTCTATACCAGTACCATTCACAGCACTCTTGACTG  450

seq1  TAATAGTATCTTGATTTTTAAGAAGCCTATGGCTTTTTTTTTTTTTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTATCTTGATTTTTAAGAAGCCTATGGCTTTTTTTTTTTTTTTGA  500

seq1  TGTTGGGCATTCATTTTGTTGATGACTTTAACTGGATGTTAGGCTTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGCATTCATTTTGTTGATGACTTTAACTGGATGTTAGGCTTACTC  550

seq1  ACTTCCTAGATTCATCTTTAGTCTCTCTGGAGTTCAGTTCCCTGTAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTAGATTCATCTTTAGTCTCTCTGGAGTTCAGTTCCCTGTAGCTT  600

seq1  AAGCACATCTGGAACCATGCATTTGGAAGGTATCATTCTTTTCTGTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATCTGGAACCATGCATTTGGAAGGTATCATTCTTTTCTGTTTCC  650

seq1  TACATATCCAAAATCAGTAGCAATTTTTAGACCCAATGATTCAACATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCCAAAATCAGTAGCAATTTTTAGACCCAATGATTCAACATTGT  700

seq1  GTTATTTCCATTGCTCTG-AATATGGAGGTTCTCATCATCTTTGGTCATC  749
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  GTTATTTCCATTGCTCTGAAATATGGAAGTTCTCATCATCTTTGGTCATC  750

seq1  CTCAATGACCAAAACTTTCCTCAAACTAATAGAAA--CTGTCTC-TTGGG  796
      |||||||||||||||||||||||||||||||||||  ||||||| |||||
seq2  CTCAATGACCAAAACTTTCCTCAAACTAATAGAAACTCTGTCTCTTTGGG  800

seq1  AATAGACAGTTTCAGCTGGTGTTTGAAGGTACTAACAGGGACCTCTGAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACAGTTTCAGCTGGTGTTTGAAGGTACTAACAGGGACCTCTGAGT  850

seq1  AATAGGATGTGTGCAAACTTGCTAGAGTATAT-AAACACTTCACCTGAAT  895
      ||||||||||||||||||||||||||||| || ||||||||| |||||||
seq2  AATAGGATGTGTGCAAACTTGCTAGAGTAAATAAAACACTTC-CCTGAAT  899

seq1  AGAAACAGAAACCAGGGGCTGTTCAGTATTGGCCATGCCTTGAGTGTGGC  945
      ||||||  |||||| |||||| ||||||||||||||||||||| ||||||
seq2  AGAAACGAAAACCA-GGGCTG-TCAGTATTGGCCATGCCTTGAATGTGGC  947

seq1  TTATCATTTGGAAAGGCAGG  965
      |||||| |||||||||||||
seq2  TTATCA-TTGGAAAGGCAGG  966


| Home | SequenceCutter | Blast | Download |