BAC Information

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BAC

Clone NameB6Ng01-325M03
Chromosome15 (Build37)
Map Location 82,631,148 - 82,801,429
singlet/doubletdoublet
Overlap geneTcf20
Upstream geneTef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26
Downstream geneNfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325M03.bB6Ng01-325M03.g
ACCGA113734GA113735
length1,138994
definitionB6Ng01-325M03.b B6Ng01-325M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,631,148 - 82,632,290)(82,800,886 - 82,801,429)
sequence
gaattctctttgcagttcccaatagcctcatgtactgcatgccactgctc
ttgctacagtacaatcattttcctatcatccaagtcatttgttggggagg
ggtgacacagttgggtaagtgctgattgtagattgttgtctgagagccca
tgacatgaatagacatgaattgaagctggatcaggaaagcaaatgcctgt
cttaatacttgtttaatgtacatcaatctggaattcttaaccttgctggt
gtataactgtacacagctggtaggagcttgggctaactggaaatgttgaa
gttgccatgaatactgtgctggactgtcaggtagacaacaagaaactaaa
gggcaggcttcgtgttagccaggggctccctgagacaagtgaagcagccc
gggagtgagctcaatcagtcagagatctggctccatcctccaagatatcc
tagaaaagacatagggatccaggcactccacagacacctgctcaggatgg
catgaaggtttcttgcttcataagatggccctcagattccagaaatgttc
aggatggagttggggagggcatctcccaggtgatctcgttctttagcacc
aaggacaggttggtgatcaagtgtctctgtctcctggcaggaggcagagt
atgaaccttgggtcaatggaaataccaagctcctactgctaagtccatat
gcataaactctacatctagaagtgtcttgctatcttagaggagccctgta
gttcttctcacccaaccctttgtctatgctttctacaatcctgttgcttg
ctttcatttgttatcccacttccctggaaactctgtgggcaatagccaca
gtgtacaaccactcacatcaatatgctggaaattcagaacaagataacat
tcatttggtgtggctatactagagagagagtccatgcataatttagggat
gagaaagccctatctttcttttttcttttctctttctcttcttccttcct
ttttttggacagggtttctctttgtagccctatcctaggaacttgctctg
tagacagctggctgaaactcaagagaacctcttgcctcctcccgaagtgc
taggaataaggtgtgccaccacccctgccagctgaagc
gaattcaggtcaccatgcttatggggccccggctgtacctaacactccat
aggacctcactgtgtagctctggctgacttcaacacctgatcctgagtgc
tgggattaaaggcgtgcgccaccattgcctggctgtactttgacttcttt
tgggtgtgcatgaccaggagcggagttgttagtatcctgttcttggtggc
ggcgctattcttcactcccagcagcaatgcacaaagattctagtttctcc
acgtgcccacaagcactcactgtctcctatcttccttaataacagccatc
ctgatgggtttggaatgtttctttgtattttgatcaatcactgatgatgt
atattggctatttgtatatcttctttttttaaaaattagggttttattag
accaggttgtcctccaacttgctatgcagctaaggatgaccttaaatgtt
ttgtttaaaaattgttacattcattatttttgtatctgtgtttctatgtg
tctgtctgtctgtctgtctcttctctctctctctctctctctctctctct
ctgtgtgtgtgtgtgtgtgctgtaatgcctgtggagaacagaggacaact
tgagcttgctgagcttgtgggaatttggttctcatcttctgccatgtcgg
tccaggggcttgaacccacgtcctcgggcttgttggcaagcaccttacac
aaagagtcaccttgccgtgaccttgaactttctatccccctgcctctacc
tcctgagtgcccagattacaagagtgcaccacacccctcaggaccccacc
gggggttttgtacatcttagccagcactctgccttacatcgccagcatct
atttgtgtgtcttcttgggagaaatacctgtacacactcttggctcctta
taaattggtctgctcatcctttacaagaactgtaggaattttgtatattt
tgtgtatttctggatacaagtccgtactaagggaaaggagttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82631148_82632290
seq2: B6Ng01-325M03.b_46_1183

seq1  GAATTCTCTTTGCAGTTCCCAATAGCCTCATGTACTGCATGCCACTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGCAGTTCCCAATAGCCTCATGTACTGCATGCCACTGCTC  50

seq1  TTGCTACAGTACAATCATTTTCCTATCATCCAAGTCATTTGTTGGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACAGTACAATCATTTTCCTATCATCCAAGTCATTTGTTGGGGAGG  100

seq1  GGTGACACAGTTGGGTAAGTGCTGATTGTAGATTGTTGTCTGAGAGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACACAGTTGGGTAAGTGCTGATTGTAGATTGTTGTCTGAGAGCCCA  150

seq1  TGACATGAATAGACATGAATTGAAGCTGGATCAGGAAAGCAAATGCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGAATAGACATGAATTGAAGCTGGATCAGGAAAGCAAATGCCTGT  200

seq1  CTTAATACTTGTTTAATGTACATCAATCTGGAATTCTTAACCTTGCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATACTTGTTTAATGTACATCAATCTGGAATTCTTAACCTTGCTGGT  250

seq1  GTATAACTGTACACAGCTGGTAGGAGCTTGGGCTAACTGGAAATGTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAACTGTACACAGCTGGTAGGAGCTTGGGCTAACTGGAAATGTTGAA  300

seq1  GTTGCCATGAATACTGTGCTGGACTGTCAGGTAGACAACAAGAAACTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCATGAATACTGTGCTGGACTGTCAGGTAGACAACAAGAAACTAAA  350

seq1  GGGCAGGCTTCGTGTTAGCCAGGGGCTCCCTGAGACAAGTGAAGCAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGCTTCGTGTTAGCCAGGGGCTCCCTGAGACAAGTGAAGCAGCCC  400

seq1  GGGAGTGAGCTCAATCAGTCAGAGATCTGGCTCCATCCTCCAAGATATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGAGCTCAATCAGTCAGAGATCTGGCTCCATCCTCCAAGATATCC  450

seq1  TAGAAAAGACATAGGGATCCAGGCACTCCACAGACACCTGCTCAGGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGACATAGGGATCCAGGCACTCCACAGACACCTGCTCAGGATGG  500

seq1  CATGAAGGTTTCTTGCTTCATAAGATGGCCCTCAGATTCCAGAAATGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGTTTCTTGCTTCATAAGATGGCCCTCAGATTCCAGAAATGTTC  550

seq1  AGGATGGAGTTGGGGAGGGCATCTCCCAGGTGATCTCGTTCTTTAGCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGAGTTGGGGAGGGCATCTCCCAGGTGATCTCGTTCTTTAGCACC  600

seq1  AAGGACAGGTTGGTGATCAAGTGTCTCTGTCTCCTGGCAGGAGGCAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGGTTGGTGATCAAGTGTCTCTGTCTCCTGGCAGGAGGCAGAGT  650

seq1  ATGAACCTTGGGTCAATGGAAATACCAAGCTCCTACTGCTAAGTCCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTTGGGTCAATGGAAATACCAAGCTCCTACTGCTAAGTCCATAT  700

seq1  GCATAAACTCTACATCTAGAAGTGTCTTGCTATCTTAGAGGAGCCCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAACTCTACATCTAGAAGTGTCTTGCTATCTTAGAGGAGCCCTGTA  750

seq1  GTTCTTCTCACCCAACCCTTTGTCTATGCTTTCTACAATCCTGTTGCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTCACCCAACCCTTTGTCTATGCTTTCTACAATCCTGTTGCTTG  800

seq1  CTTTCATTTGTTATCCCACTTCCCTGGAAACTCTGTGGGCAATAGCCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTGTTATCCCACTTCCCTGGAAACTCTGTGGGCAATAGCCACA  850

seq1  GTGTACAACCACTCACATCAATATGCTGGAAATTCAGAACAAGATAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAACCACTCACATCAATATGCTGGAAATTCAGAACAAGATAACAT  900

seq1  TCATTTGGTGTGGCTATACTAGAGAGAAGAGTCCATGCATAATTTAGGGA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCATTTGGTGTGGCTATACTAGAGAG-AGAGTCCATGCATAATTTAGGGA  949

seq1  TGAGAAAGCCCTATCTTTCTTTTTTCTTTTCCTCTTTCTCTTCCTTCCTT  1000
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  TGAGAAAGCCCTATCTTTCTTTTTTCTTTT-CTCTTTCTCTT-CTTCCTT  997

seq1  CCTTTTTTTGGACAGGGTTTCTCTTTGTAGCCCTATCCTA-GAACTTGCT  1049
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTTTTTTTGGACAGGGTTTCTCTTTGTAGCCCTATCCTAGGAACTTGCT  1047

seq1  CTGTAGACCAGGCTGGCCTTGAACTCAAGAGAACCTC-TGCCTCCTCCCG  1098
      ||||||||   ||||| ||  |||||||||||||||| ||||||||||||
seq2  CTGTAGAC--AGCTGG-CTGAAACTCAAGAGAACCTCTTGCCTCCTCCCG  1094

seq1  -AGTGCTAGGATTAAAGGTGTG-CACCACCACTGCCCAGCTAGAAGC  1143
       |||||||||| | |||||||| ||||||| ||| |||||| |||||
seq2  AAGTGCTAGGAAT-AAGGTGTGCCACCACCCCTG-CCAGCT-GAAGC  1138

seq1: chr15_82800886_82801429
seq2: B6Ng01-325M03.g_69_612 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAAGAGACAGACAGACAGACAGACACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAAGAGACAGACAGACAGACAGACACATA  50

seq1  GAAACACAGATACAAAAATAATGAATGTAACAATTTTTAAACAAAACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAGATACAAAAATAATGAATGTAACAATTTTTAAACAAAACATT  100

seq1  TAAGGTCATCCTTAGCTGCATAGCAAGTTGGAGGACAACCTGGTCTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCATCCTTAGCTGCATAGCAAGTTGGAGGACAACCTGGTCTAATA  150

seq1  AAACCCTAATTTTTAAAAAAAGAAGATATACAAATAGCCAATATACATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTAATTTTTAAAAAAAGAAGATATACAAATAGCCAATATACATCA  200

seq1  TCAGTGATTGATCAAAATACAAAGAAACATTCCAAACCCATCAGGATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATTGATCAAAATACAAAGAAACATTCCAAACCCATCAGGATGGC  250

seq1  TGTTATTAAGGAAGATAGGAGACAGTGAGTGCTTGTGGGCACGTGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTAAGGAAGATAGGAGACAGTGAGTGCTTGTGGGCACGTGGAGAA  300

seq1  ACTAGAATCTTTGTGCATTGCTGCTGGGAGTGAAGAATAGCGCCGCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATCTTTGTGCATTGCTGCTGGGAGTGAAGAATAGCGCCGCCACC  350

seq1  AAGAACAGGATACTAACAACTCCGCTCCTGGTCATGCACACCCAAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGGATACTAACAACTCCGCTCCTGGTCATGCACACCCAAAAGAA  400

seq1  GTCAAAGTACAGCCAGGCAATGGTGGCGCACGCCTTTAATCCCAGCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGTACAGCCAGGCAATGGTGGCGCACGCCTTTAATCCCAGCACTC  450

seq1  AGGATCAGGTGTTGAAGTCAGCCAGAGCTACACAGTGAGGTCCTATGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGGTGTTGAAGTCAGCCAGAGCTACACAGTGAGGTCCTATGGAG  500

seq1  TGTTAGGTACAGCCGGGGCCCCATAAGCATGGTGACCTGAATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTACAGCCGGGGCCCCATAAGCATGGTGACCTGAATTC  544