BAC Information

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BAC

Clone NameB6Ng01-325P20
Chromosome15 (Build37)
Map Location 28,103,397 - 28,241,404
singlet/doubletdoublet
Overlap geneDnahc5
Upstream geneAnk, BC087945, LOC100040622, BC052328, Trio, LOC667126
Downstream geneEG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325P20.bB6Ng01-325P20.g
ACCGA113910GA113911
length1,186397
definitionB6Ng01-325P20.b B6Ng01-325P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,240,229 - 28,241,404)(28,103,397 - 28,103,799)
sequence
gaattcataacagaaaaactgtcttaagttaaatatatatatatgtgtgt
gtgtatgtatgtacatgtatataaatatgtgtgtgtatatatatatatat
atatgtggtccccaagaatctttaagtatacagttatatatgaacaaata
gccaatagttaaaatgtttaagcttatccatatttagtaagtccttatga
aaatcttaatatttggtcagactaaaaatgtgccacttatgaagcatata
taggcaatatctaagatttaaaaaactttccaatttggatccactgacct
gagcggggaaggaagaaagaaattcaatcaattggaaaccgggttcttga
atatttgcagctgcctggcgaatcacaagatgtaatgaggactgtgactc
ctccagcagagaattaagccagacttccacattgccctctgccatcacag
gcttgtccaattcaattgtctcgccctcccgagaggagattgacagaatc
cgatcatagatctaagttagaagatgaaaaagatagctctgttcatataa
aaataagaaatacctttcctctgtgccctttgtcagtgccacccttccca
ttacaagttaaggtgcaaatcataaaacagagggcaaaccaggacataaa
gtcatttcaaagcagcaaccaaaagctagctttaaaatctataggagaaa
cgtaagtcaattccaactcatcagaactctaaagggctgaacttatttct
aaaagcaaaacttaatacaaatatgctgatggaagagaaaaaattctaaa
atcctccaggcagcatggagctcacgacgaggctataagtctacaccaca
tggctattgggttgacattaggaaaggcctgatcaatgaccttatgatga
taagaacagagccagacaaagttaattctgaccctgtgcaagcccagtgc
gctccaggagaggagtctcgtgtgtcctctaatcaaggtccaaccctgtt
ctgctcatttccttcagttctctggcagtgctgcatcatgagtgttgctt
gtcttagagtgcaagactaaatcccttatgggacttccttatggaaagac
aggaacaagaaccaattcctttgtatgttaattagcattgaagaaaggca
cccttttctggcattctctgctcatgagccatgaca

atggaggaactaacaattatgcataggttgcaccgtgttttataataaac
attccctattgagttctaggctctggggatggtggtgtcctgtgtggtca
aggattacttcagatgcagaaaagaagtagaacaggtacagtagcagcag
ggtgccaccgtggtgtcacagcataggtagtggtgatgctgaggagagag
gaaggagagagatgcagaactgtcaagaaatagcatgttcccaacattgg
gctgcctaggctagccccaacaagagaagatgcacctagtcttggggcaa
cttgatgtgccaagcttagttgatatctatgggagacacccctttttttg
cagagaaagagaagtagtagatgggggagcaggtgtggggggagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28240229_28241404
seq2: B6Ng01-325P20.b_44_1229 (reverse)

seq1  TGTCAT-GCTCATGAGCAGAG-ATG-CAGAAAA-GGTGCCTTCTTTCAAT  46
      |||||| |||||||||||||| ||| ||||||| ||||||||  ||||||
seq2  TGTCATGGCTCATGAGCAGAGAATGCCAGAAAAGGGTGCCTTTCTTCAAT  50

seq1  GGCTAAT--ACATAC-AAGGAATTTGGTCTTTGTTCTGTC-TTCCATAAG  92
       ||||||  |||||| |||||||| | ||||  | ||||| |||||||||
seq2  -GCTAATTAACATACAAAGGAATTGGTTCTTGTTCCTGTCTTTCCATAAG  99

seq1  G-AGTTCCATAA-GGATCTAGGTCTTGCACTCT-AGAC-AGC-ACACTCA  137
      | ||| |||||| |||| || |||||||||||| |||| ||| |||||||
seq2  GAAGTCCCATAAGGGATTTA-GTCTTGCACTCTAAGACAAGCAACACTCA  148

seq1  TGATGCAGCACTGCCCAGAG-ACTGAAGGGAAATGAGCAGAACAGGGGTT  186
      ||||||||||||| |||||| |||||| |||||||||||||||| |||||
seq2  TGATGCAGCACTG-CCAGAGAACTGAA-GGAAATGAGCAGAACA-GGGTT  195

seq1  GGA-CTTGATTAGAGGACACACGAGACTCCTCTCCTGGAGCGCACTGGGC  235
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTGATTAGAGGACACACGAGACTCCTCTCCTGGAGCGCACTGGGC  245

seq1  TTGGCACAGGGTCAGAATT-ACTTTGTCTTGGCTCTGTTCTTATCATCAT  284
      || |||||||||||||||| |||||||| |||||||||||||||||||||
seq2  TT-GCACAGGGTCAGAATTAACTTTGTC-TGGCTCTGTTCTTATCATCAT  293

seq1  AAGGTCATTGATCAGGCCTTTCCTAATGTCAA-CCAATAGCCATGTGGTG  333
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGGTCATTGATCAGGCCTTTCCTAATGTCAACCCAATAGCCATGTGGTG  343

seq1  TAGACTTATAGCCTCGTCGTGAGCTCCATGCTGCCTGGAGGATTTTAGAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTATAGCCTCGTCGTGAGCTCCATGCTGCCTGGAGGATTTTAGAA  393

seq1  TTTTTTCTCTTCCATCAGCATATTTGTATTAAGTTTTGCTTTTAGAAATA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTTCCATCAGCATATTTGTATTAAGTTTTGCTTTTAGAAATA  443

seq1  AGTTCAGCCCTTTAGAGTTCTGATGAGTTGGAATTGACTTACGTTTCTCC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGCCCTTTAGAGTTCTGATGAGTTGGAATTGACTTACGTTTCTCC  493

seq1  TATAGATTTTAAAGCTAGCTTTTGGTTGCTGCTTTGAAATGACTTTATGT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTTTAAAGCTAGCTTTTGGTTGCTGCTTTGAAATGACTTTATGT  543

seq1  CCTGGTTTGCCCTCTGTTTTATGATTTGCACCTTAACTTGTAATGGGAAG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTGCCCTCTGTTTTATGATTTGCACCTTAACTTGTAATGGGAAG  593

seq1  GGTGGCACTGACAAAGGGCACAGAGGAAAGGTATTTCTTATTTTTATATG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACTGACAAAGGGCACAGAGGAAAGGTATTTCTTATTTTTATATG  643

seq1  AACAGAGCTATCTTTTTCATCTTCTAACTTAGATCTATGATCGGATTCTG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGCTATCTTTTTCATCTTCTAACTTAGATCTATGATCGGATTCTG  693

seq1  TCAATCTCCTCTCGGGAGGGCGAGACAATTGAATTGGACAAGCCTGTGAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTCCTCTCGGGAGGGCGAGACAATTGAATTGGACAAGCCTGTGAT  743

seq1  GGCAGAGGGCAATGTGGAAGTCTGGCTTAATTCTCTGCTGGAGGAGTCAC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGGCAATGTGGAAGTCTGGCTTAATTCTCTGCTGGAGGAGTCAC  793

seq1  AGTCCTCATTACATCTTGTGATTCGCCAGGCAGCTGCAAATATTCAAGAA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCATTACATCTTGTGATTCGCCAGGCAGCTGCAAATATTCAAGAA  843

seq1  CCCGGTTTCCAATTGATTGAATTTCTTTCTTCCTTCCCCGCTCAGGTCAG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTTTCCAATTGATTGAATTTCTTTCTTCCTTCCCCGCTCAGGTCAG  893

seq1  TGGATCCAAATTGGAAAGTTTTTTAAATCTTAGATATTGCCTATATATGC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCAAATTGGAAAGTTTTTTAAATCTTAGATATTGCCTATATATGC  943

seq1  TTCATAAGTGGCACATTTTTAGTCTGACCAAATATTAAGATTTTCATAAG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGTGGCACATTTTTAGTCTGACCAAATATTAAGATTTTCATAAG  993

seq1  GACTTACTAAATATGGATAAGCTTAAACATTTTAACTATTGGCTATTTGT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACTAAATATGGATAAGCTTAAACATTTTAACTATTGGCTATTTGT  1043

seq1  TCATATATAACTGTATACTTAAAGATTATTGGGGATCACATATATATATA  1083
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  TCATATATAACTGTATACTTAAAGATTCTTGGGGACCACATATATATATA  1093

seq1  TATATATACACACACATATTTATATACATGTACATACATACACACACACA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACACACACATATTTATATACATGTACATACATACACACACACA  1143

seq1  TATATATATATTTAACTTAAGACAGTTTTTCTGTTATGAATTC  1176
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATTTAACTTAAGACAGTTTTTCTGTTATGAATTC  1186


seq1: chr15_28103397_28103799
seq2: B6Ng01-325P20.g_68_470

seq1  GAATTCATGGAGGAACTAACAATTATGCATAGGTTGCACCGTGTTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGAGGAACTAACAATTATGCATAGGTTGCACCGTGTTTTATA  50

seq1  ATAAACATTCCCTATTGAGTTCTAGGCTCTGGGGATGGTGGTGTCCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATTCCCTATTGAGTTCTAGGCTCTGGGGATGGTGGTGTCCTGTG  100

seq1  TGGTCAAGGATTACTTCAGATGCAGAAAAGAAGTAGAACAGGTACAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGGATTACTTCAGATGCAGAAAAGAAGTAGAACAGGTACAGTAG  150

seq1  CAGCAGGGTGCCACCGTGGTGTCACAGCATAGGTAGTGGTGATGCTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGTGCCACCGTGGTGTCACAGCATAGGTAGTGGTGATGCTGAGG  200

seq1  AGAGAGGAAGGAGAGAGATGCAGAACTGTCAAGAAATAGCATGTTCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAAGGAGAGAGATGCAGAACTGTCAAGAAATAGCATGTTCCCAA  250

seq1  CATTGGGCTGCCTAGGCTAGCCCCAACAAGAGAAGATGCACCTAGTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGCTGCCTAGGCTAGCCCCAACAAGAGAAGATGCACCTAGTCTTG  300

seq1  GGGCAACTTGATGTGCCAAGCTTAGTTGATATCTATGGGAGACACCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACTTGATGTGCCAAGCTTAGTTGATATCTATGGGAGACACCCCTT  350

seq1  TTTTTGCAGAGAAAGAGAAGTAGTAGATGGGGGAGCAGGTGTGGGGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCAGAGAAAGAGAAGTAGTAGATGGGGGAGCAGGTGTGGGGGGAG  400

seq1  AAC  403
      |||
seq2  AAC  403


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