BAC Information

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BAC

Clone NameB6Ng01-327C06
Chromosome15 (Build37)
Map Location 89,061,132 - 89,099,899
singlet/doubletdoublet
Overlap geneSaps2
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik
Downstream geneSbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10, Alg10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327C06.bB6Ng01-327C06.g
ACCGA114765GA114766
length1,1181,129
definitionB6Ng01-327C06.b B6Ng01-327C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,098,776 - 89,099,899)(89,061,132 - 89,062,249)
sequence
gaattcttaggaggattctgagctaagagatgctaagtgaagcccccaag
ttttaaaaacagttatcatgtgtatatattatgtatctgcttgtgagtgt
actatgggcatgtgtctgcacactcctgggcacatgtataccacagtaca
ggtgtgaaggtcagaaggcaactctgtggacttgatcttctcctttcatc
tttatacgattcccaggaagcaaggtcaggtcatgaggcctgcacagaaa
gcattttgcctgctcagccatctcatggccccaggtttgcttcattctat
tggattcaggtattttctgatccatctgtgtttggcaaaacagagttctt
gcctccatgaatccttacgtattagtggggggacaagacaataaataagt
cagtaagtatgggtgtaccaggaaaaaggctggaactgtgtgtggggaag
gacagtaatgtgaggctggagggcaggaggcagctgaggacctttgtgaa
ttttaccgtccttggcctaacccaagaactcccctgagctgtcgactgaa
cagaaagttcccctgggagctcagcctccaggagccacccttggcgagtc
acgcccctgaccaagaggccaggtgacctcatgcttagttcagggggttc
tgccatgcccatgcccaggcctctcctagtggaggcaacttggctatttc
tagctaatagtctattttaacatctgcccagtggttttccagctagcacc
tcgaagggcaacatcaaagcacactgttttccatactctgtcctgtcctc
tacaccatgccaccccacacctctaactgctctgtttacctttggtgggt
tgaggaggagctgatggaaattcttcagccatggctcgatgccacgaaag
gatgctgctgctgacggagtgtgacctttccagtccctgagaaaaggagt
ccaccaagccttctgttctgtgaataaaggcgtgcagagtgctgtgtccg
tgcataccccattcattttgtcaatgttctatttagcatcttccaaaaca
tgtctgaaaagggacattactcgaagactcctcacaccactgctgactgg
catactcttgcccttagc
gaattctgtgagttcaagcccagcctggtctataatgtgagcttcaggat
agccaaggccacacaaggaaacccggtcttgaaacacctccttcaaaaaa
aaccaaaccaaaccaaatcaaaccaaaccaaaccaacaacaaaacaagct
ttcccctgttgattgtcttctacatggtgtttctgtaggtgagcatctat
catgtccagcagcctcatcctacctgtcttctccatccagcttccttcct
tctgcttacactatgttctagagtgactgttctagaaccctgtgtagagc
aatgagggagtgaagaaaggatagatactggagccaggtaggttgtgtgc
accaactaccaatatgggggagttcagcatgtttattttgtacagcacag
tggggaagagttaggcaggaagtatctgtaagagatgcagatgcctgaga
cttcaggctgtaaacatctgggaaaagagaagttccattgctagggtttt
tttgtacttactggtcagttgtttgtaaacagaggaacttggaccaggag
ccagctttgcctctcttagctgacccaggggaaggcttttccaacttccc
atgaatcctaggccttggtccctgacatggcaggctcatatcaaacaatc
cctcagagctgttcagggtctcctctgttccctacactgccccatgccaa
agggctttgtgttgcagtgcttgctttaggaagtgacaggaggatcaaca
gttgggtggctggcacttttttattgcctcagtgagaaaggtttgcatta
cagaggtctagaattgtaggatgctcacttttgactgaagctggtatccc
cgttttccctttctctttttcgtgtctggagttagtctacactgtgctgt
gcttgctcctggacagatacgcagacaaattttgttcctcaggcagtttc
ttccatatgcttttataagggattttaagtttttcaacttaatttatttt
gtggagatggtctccacttgtagattcttatgccttctgcctcccaagtg
ttggggattaagctgagcatccactatcctcactccgattttattttatt
ttgagtatggttctgcacatgaaatgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_89098776_89099899
seq2: B6Ng01-327C06.b_46_1163 (reverse)

seq1  GCTAAGGGGCCAAGAGTATGCCAGTCAGCAAGTGGTGTGAAGAAGTC-TC  49
      ||||||||  ||||||||||||||||||| ||||||||| || |||| ||
seq2  GCTAAGGG--CAAGAGTATGCCAGTCAGC-AGTGGTGTG-AGGAGTCTTC  46

seq1  GAGTAATGTTCCTTTTCAGACATGGTTTTGGGAAGATGCTTAATAGAACA  99
      ||||||||| ||||||||||||||  ||| |||||||||| |||||||||
seq2  GAGTAATGTCCCTTTTCAGACATG--TTTTGGAAGATGCTAAATAGAACA  94

seq1  TTGACAAAATGAATGGGGTATGCACGGGACACAGCACTCTGCCACGCCTT  149
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  TTGACAAAATGAATGGGGTATGCAC-GGACACAGCACTCTG-CACGCCTT  142

seq1  TATTCACAGAACAGAAGGCTTGGTGGACTCCTTTTCTCAGGGACTGGAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACAGAACAGAAGGCTTGGTGGACTCCTTTTCTCAGGGACTGGAAA  192

seq1  GGTCACACTCCGTCAGCAGCAGCATCC-TTCGTGGCATCGAGCCATGGCT  248
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTCACACTCCGTCAGCAGCAGCATCCTTTCGTGGCATCGAGCCATGGCT  242

seq1  GAAGAATTTCCATCAGCTCCTCCTCAACCCACCAAAGGTAAACAGAGCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTTCCATCAGCTCCTCCTCAACCCACCAAAGGTAAACAGAGCAG  292

seq1  TTAGAGGTGTGGGGTGGCATGGTGTAGAGGACAGGACAGAGTATGGAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGTGTGGGGTGGCATGGTGTAGAGGACAGGACAGAGTATGGAAAA  342

seq1  CAGTGTGCTTTGATGTTGCCCTTCGAGGTGCTAGCTGGAAAACCACTGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGCTTTGATGTTGCCCTTCGAGGTGCTAGCTGGAAAACCACTGGG  392

seq1  CAGATGTTAAAATAGACTATTAGCTAGAAATAGCCAAGTTGCCTCCACTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTAAAATAGACTATTAGCTAGAAATAGCCAAGTTGCCTCCACTA  442

seq1  GGAGAGGCCTGGGCATGGGCATGGCAGAACCCCCTGAACTAAGCATGAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGCCTGGGCATGGGCATGGCAGAACCCCCTGAACTAAGCATGAGG  492

seq1  TCACCTGGCCTCTTGGTCAGGGGCGTGACTCGCCAAGGGTGGCTCCTGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGCCTCTTGGTCAGGGGCGTGACTCGCCAAGGGTGGCTCCTGGA  542

seq1  GGCTGAGCTCCCAGGGGAACTTTCTGTTCAGTCGACAGCTCAGGGGAGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGCTCCCAGGGGAACTTTCTGTTCAGTCGACAGCTCAGGGGAGTT  592

seq1  CTTGGGTTAGGCCAAGGACGGTAAAATTCACAAAGGTCCTCAGCTGCCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTAGGCCAAGGACGGTAAAATTCACAAAGGTCCTCAGCTGCCTC  642

seq1  CTGCCCTCCAGCCTCACATTACTGTCCTTCCCCACACACAGTTCCAGCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCCAGCCTCACATTACTGTCCTTCCCCACACACAGTTCCAGCCT  692

seq1  TTTTCCTGGTACACCCATACTTACTGACTTATTTATTGTCTTGTCCCCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGGTACACCCATACTTACTGACTTATTTATTGTCTTGTCCCCCC  742

seq1  ACTAATACGTAAGGATTCATGGAGGCAAGAACTCTGTTTTGCCAAACACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATACGTAAGGATTCATGGAGGCAAGAACTCTGTTTTGCCAAACACA  792

seq1  GATGGATCAGAAAATACCTGAATCCAATAGAATGAAGCAAACCTGGGGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCAGAAAATACCTGAATCCAATAGAATGAAGCAAACCTGGGGCC  842

seq1  ATGAGATGGCTGAGCAGGCAAAATGCTTTCTGTGCAGGCCTCATGACCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGGCTGAGCAGGCAAAATGCTTTCTGTGCAGGCCTCATGACCTG  892

seq1  ACCTTGCTTCCTGGGAATCGTATAAAGATGAAAGGAGAAGATCAAGTCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTTCCTGGGAATCGTATAAAGATGAAAGGAGAAGATCAAGTCCA  942

seq1  CAGAGTTGCCTTCTGACCTTCACACCTGTACTGTGGTATACATGTGCCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGCCTTCTGACCTTCACACCTGTACTGTGGTATACATGTGCCCA  992

seq1  GGAGTGTGCAGACACATGCCCATAGTACACTCACAAGCAGATACATAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGCAGACACATGCCCATAGTACACTCACAAGCAGATACATAATA  1042

seq1  TATACACATGATAACTGTTTTTAAAACTTGGGGGCTTCACTTAGCATCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACATGATAACTGTTTTTAAAACTTGGGGGCTTCACTTAGCATCTC  1092

seq1  TTAGCTCAGAATCCTCCTAAGAATTC  1124
      ||||||||||||||||||||||||||
seq2  TTAGCTCAGAATCCTCCTAAGAATTC  1118

seq1: chr15_89061132_89062249
seq2: B6Ng01-327C06.g_70_1198

seq1  GAATTCTGTGAGTTCAAGCCCAGCCTGGTCTATAATGTGAGCTTCAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGTTCAAGCCCAGCCTGGTCTATAATGTGAGCTTCAGGAT  50

seq1  AGCCAAGGCCACACAAGGAAACCCGGTCTTGAAACACCTCCTTCAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGCCACACAAGGAAACCCGGTCTTGAAACACCTCCTTCAAAAAA  100

seq1  AACCAAACCAAACCAAATCAAACCAAACCAAACCAACAACAAAACAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACCAAACCAAATCAAACCAAACCAAACCAACAACAAAACAAGCT  150

seq1  TTCCCCTGTTGATTGTCTTCTACATGGTGTTTCTGTAGGTGAGCATCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGTTGATTGTCTTCTACATGGTGTTTCTGTAGGTGAGCATCTAT  200

seq1  CATGTCCAGCAGCCTCATCCTACCTGTCTTCTCCATCCAGCTTCCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCAGCAGCCTCATCCTACCTGTCTTCTCCATCCAGCTTCCTTCCT  250

seq1  TCTGCTTACACTATGTTCTAGAGTGACTGTTCTAGAACCCTGTGTAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTACACTATGTTCTAGAGTGACTGTTCTAGAACCCTGTGTAGAGC  300

seq1  AATGAGGGAGTGAAGAAAGGATAGATACTGGAGCCAGGTAGGTTGTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGAGTGAAGAAAGGATAGATACTGGAGCCAGGTAGGTTGTGTGC  350

seq1  ACCAACTACCAATATGGGGGAGTTCAGCATGTTTATTTTGTACAGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTACCAATATGGGGGAGTTCAGCATGTTTATTTTGTACAGCACAG  400

seq1  TGGGGAAGAGTTAGGCAGGAAGTATCTGTAAGAGATGCAGATGCCTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGAGTTAGGCAGGAAGTATCTGTAAGAGATGCAGATGCCTGAGA  450

seq1  CTTCAGGCTGTAAACATCTGGGAAAAGAGAAGTTCCATTGCTAGGGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCTGTAAACATCTGGGAAAAGAGAAGTTCCATTGCTAGGGTTTT  500

seq1  TTTGTACTTACTGGTCAGTTGTTTGTAAACAGAGGAACTTGGACCAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACTTACTGGTCAGTTGTTTGTAAACAGAGGAACTTGGACCAGGAG  550

seq1  CCAGCTTTGCCTCTCTTAGCTGACCCAGGGGAAGGCTTTTCCAACTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTGCCTCTCTTAGCTGACCCAGGGGAAGGCTTTTCCAACTTCCC  600

seq1  ATGAATCCTAGGCCTTGGTCCCTGACATGGCAGGCTCATATCAAACAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCCTAGGCCTTGGTCCCTGACATGGCAGGCTCATATCAAACAATC  650

seq1  CCTCAGAGCTGTTCAGGGTCTCCTCTGTTCCCTACACTGCCCCATGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGCTGTTCAGGGTCTCCTCTGTTCCCTACACTGCCCCATGCCAA  700

seq1  AGGGCTTTGTGTTGCAGTGCTTGCTTTAGGAAGTGACAGGAGGATCAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTGTGTTGCAGTGCTTGCTTTAGGAAGTGACAGGAGGATCAACA  750

seq1  GTTGGGTGGCTGGCACTTTTTTATTGCCTCAGTGAGAAAGGTTTGCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTGGCTGGCACTTTTTTATTGCCTCAGTGAGAAAGGTTTGCATTA  800

seq1  CAGAGGTCTAGAATTGTAGGATGCTCACTTTTGACTGAAGCTGGTATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCTAGAATTGTAGGATGCTCACTTTTGACTGAAGCTGGTATCCC  850

seq1  CGTTTTCCCTTTCTCTTTTTCGTGTCTGGAGTTAGTCTACACTGTGCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTCCCTTTCTCTTTTTCGTGTCTGGAGTTAGTCTACACTGTGCTGT  900

seq1  GCTTGCTCCTGGACAGATACGCAGACAAA-TTTGTTCCTCAGGCAGTT--  947
      ||||||||||||||||||||||||||||| ||||||||||||||||||  
seq2  GCTTGCTCCTGGACAGATACGCAGACAAATTTTGTTCCTCAGGCAGTTTC  950

seq1  CTCCATATGC-TTTATAA-GGATTTTAAGTTTT--CACTTAATTTA-TTT  992
       ||||||||| ||||||| ||||||||||||||   |||||||||| |||
seq2  TTCCATATGCTTTTATAAGGGATTTTAAGTTTTTCAACTTAATTTATTTT  1000

seq1  GTGGAGATGGGTCTCCACTTTGTAGAT--CTATGCC-TCTGCCTCCCAAG  1039
      |||||||| ||||||||| ||||||||   |||||| |||||||||||||
seq2  GTGGAGAT-GGTCTCCAC-TTGTAGATTCTTATGCCTTCTGCCTCCCAAG  1048

seq1  TGTTGGGATTAAAGCTGAGCAT-CACTATTCCTCACT-CGATTTTAATTT  1087
      |||||||  | ||||||||||| ||||| |||||||| ||||||| ||||
seq2  TGTTGGGGATTAAGCTGAGCATCCACTA-TCCTCACTCCGATTTT-ATTT  1096

seq1  TATTTTTAATTATG--TCTGCACATG-AATGATA  1118
      || |||| | ||||  |||||||||| |||||||
seq2  TA-TTTTGAGTATGGTTCTGCACATGAAATGATA  1129