BAC Information

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BAC

Clone NameB6Ng01-329D24
Chromosome15 (Build37)
Map Location 24,887,399 - 25,004,533
singlet/doubletdoublet
Overlap geneLOC100040529
Upstream geneLOC666989, LOC666999, LOC100040492, LOC100040499
Downstream gene9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329D24.bB6Ng01-329D24.g
ACCGA116269GA116270
length1,1921,089
definitionB6Ng01-329D24.b B6Ng01-329D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,887,399 - 24,888,592)(25,003,433 - 25,004,533)
sequence
gaattcagagaagagattactctgtgtctgagtataaattcaaatcaaat
gaaatacaatctgaattgactaaagaatctggaataaatagaaatatacc
ccacctttctgagtattggtttatctttatggttttaacatttttgtgct
taattttgtgaaagatatctgtgtgctgaaattgggtttgtagatcacct
ataagaattctgaataaaaccatttagtctcgacctgacttcttttttta
ttagatattttcttcatttacatttcaaatactatccccaaagtccccta
taccctccccaacccacccagtcctgcttcctggccctggcattcccctg
tactggggcatatgatcttcgcaagaccaagggcctctcctcccattgat
ggctgactaggccatcctctgctatatatgcaactagagacacagctctg
gagggtactggttagttcatattgttgttcctcctatagggttgcagacc
cctttaactctttgagtactttctctagctccttcattaggggccctgtg
ttgcatccaattgactgtgagcatccacttctgtatttgccaggcactgg
catagcctcacaagagagagctatatcagggtcctgtcagcaaaatcttt
ctggcctgacttctaattcacagcttagcattggttttagtttttcttta
tgtgaagagtttaagcaatctgaacactcacatcttaaaccacaaacagg
aagctaagttcccaatgaaatggtgggaggcatttgaaactccaaaacca
actccagtgaggtacttcctccagcaagccatgaaataccttattgtatg
aatagtcttgagtaatttaatatcttttgtttaacagacatcatctaact
ctataacaaataatgattctgaaatctgctagattatgtgtctagcctat
gcaaagcattcttcaactgattcctggagaagaaagaagtgtagtttatt
catggcttcaccagtcaaaatactttactcaatgtttttcatggtggtgg
ggcatgttaccattgggagcttgttcggtatgccgtgtctgtcttgaata
actctgcagtatttttttcctcctcaattaatggatacttagtgaaacta
tctggtccatgactaatgaacaatcccatgtatgtgtttcac

gaattctcttctctgtactttgatctgcttgtatggcttttaatgctaaa
aatgttttaactatgattttatgacttggaaaatatgctatatcgttatt
tggttttatttttcaaaaatgccctgagcattcttgcattttgttttctc
atatgaatgtcagaataacactccattttttaaagtaaaaatttgttgaa
taacaagtaacaaatgttacattaacatagtataggataaagaaactaaa
agtagtatccccaggagagtacagtcttactttccttttattttgtttac
ttttaagtcttaggagaatgttagcattctattattagtgccctcacatt
atatcattaaaattattttagtagctattttgttctttcttgatgctgat
atgcataagacattacctactatcatttttatagatgttgctttatgaag
gaaatatattgatttcattattaattttgttacaagtcactgtatgctaa
tagtttttcagctatggtaatcaattacattgttagtgaatgataaatta
ttccttctttttattttttataatttctattttgtagcctctagttaaca
ttttaagaatataacagaatttatataagagttttagttaataacagaaa
caatggtagcatttgcctataataaaatacaactagtattcaataattaa
gcatgaattttatagcctgagtcaggatgtagaaaatttaaaagataatc
aagtttttgcaatttattgggatcatgaaaatgtcaaaatatgatacaat
tctttacttgcttgaaaatccacttagagaatattattgaatactctttt
ggaaactaggatgaagtcacatgacctttccttcttcgatgcatgggtag
catattaatattagtgttaagccattttgtatgattgaagccaagctcat
tagttgtaaggaattttttctgtattttttaaaaatatgacaaatcagtt
tataagttctataattttgcatttgggtttacacaaacttgctgctaggt
ttttaaaatatgttattattgagaactttaacatgaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_24887399_24888592
seq2: B6Ng01-329D24.b_46_1237

seq1  GAATTCAGAGAAGAGATTACTCTGTGTCTGAGTATAAATTCAAATCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAGAGATTACTCTGTGTCTGAGTATAAATTCAAATCAAAT  50

seq1  GAAATACAATCTGAATTGACTAAAGAATCTGGAATAAATAGAAATATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAATCTGAATTGACTAAAGAATCTGGAATAAATAGAAATATACC  100

seq1  CCACCTTTCTGAGTATTGGTTTATCTTTATGGTTTTAACATTTTTGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTCTGAGTATTGGTTTATCTTTATGGTTTTAACATTTTTGTGCT  150

seq1  TAATTTTGTGAAAGATATCTGTGTGCTGAAATTGGGTTTGTAGATCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGTGAAAGATATCTGTGTGCTGAAATTGGGTTTGTAGATCACCT  200

seq1  ATAAGAATTCTGAATAAAACCATTTAGTCTCGACCTGACTTCTTTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATTCTGAATAAAACCATTTAGTCTCGACCTGACTTCTTTTTTTA  250

seq1  TTAGATATTTTCTTCATTTACATTTCAAATACTATCCCCAAAGTCCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATTTTCTTCATTTACATTTCAAATACTATCCCCAAAGTCCCCTA  300

seq1  TACCCTCCCCAACCCACCCAGTCCTGCTTCCTGGCCCTGGCATTCCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCCCCAACCCACCCAGTCCTGCTTCCTGGCCCTGGCATTCCCCTG  350

seq1  TACTGGGGCATATGATCTTCGCAAGACCAAGGGCCTCTCCTCCCATTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGGCATATGATCTTCGCAAGACCAAGGGCCTCTCCTCCCATTGAT  400

seq1  GGCTGACTAGGCCATCCTCTGCTATATATGCAACTAGAGACACAGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTAGGCCATCCTCTGCTATATATGCAACTAGAGACACAGCTCTG  450

seq1  GAGGGTACTGGTTAGTTCATATTGTTGTTCCTCCTATAGGGTTGCAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTACTGGTTAGTTCATATTGTTGTTCCTCCTATAGGGTTGCAGACC  500

seq1  CCTTTAACTCTTTGAGTACTTTCTCTAGCTCCTTCATTAGGGGCCCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAACTCTTTGAGTACTTTCTCTAGCTCCTTCATTAGGGGCCCTGTG  550

seq1  TTGCATCCAATTGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCCAATTGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGG  600

seq1  CATAGCCTCACAAGAGAGAGCTATATCAGGGTCCTGTCAGCAAAATCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCTCACAAGAGAGAGCTATATCAGGGTCCTGTCAGCAAAATCTTT  650

seq1  CTGGCCTGACTTCTAATTCACAGCTTAGCATTGGTTTTAGTTTTTCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTGACTTCTAATTCACAGCTTAGCATTGGTTTTAGTTTTTCTTTA  700

seq1  TGTGAAGAGTTTAAGCAATCTGAACACTCACATCTTAAACCACAAACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGAGTTTAAGCAATCTGAACACTCACATCTTAAACCACAAACAGG  750

seq1  AAGCTAAGTTCCCAATGAAATGGTGGGAGGCATTTGAAACTCCAAAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGTTCCCAATGAAATGGTGGGAGGCATTTGAAACTCCAAAACCA  800

seq1  ACTCCAGTGAGGTACTTCCTCCAGCAAGCCATGAAATACCTTATTGTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTGAGGTACTTCCTCCAGCAAGCCATGAAATACCTTATTGTATG  850

seq1  AATAGTCTTGAGTAATTTAATATCTTTTGTTTAACAGACATCATCTAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCTTGAGTAATTTAATATCTTTTGTTTAACAGACATCATCTAACT  900

seq1  CTATAACAAATAATGATTCTGAAATCTGCTAGATTATGTGTCTAGCCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACAAATAATGATTCTGAAATCTGCTAGATTATGTGTCTAGCCTAT  950

seq1  GCAAAGCATTCTTCAACTGATTCCTGGAGAAGAAAGGAAGGTTGTAGTTT  1000
      ||||||||||||||||||||||||||||||||||| ||||  ||||||||
seq2  GCAAAGCATTCTTCAACTGATTCCTGGAGAAGAAA-GAAG--TGTAGTTT  997

seq1  ATTCATGGCTTCA-CAGTCAAAATACTTTACCCAATTGTTTTTCATGGT-  1048
      ||||||||||||| ||||||||||||||||| ||| ||||||||||||| 
seq2  ATTCATGGCTTCACCAGTCAAAATACTTTACTCAA-TGTTTTTCATGGTG  1046

seq1  GTGGGCAATTGTTTACCCATTGGAGC-TGTTC-GTATGCCGTGTCTGTCT  1096
      |||||  ||   |||||  | ||||| ||||| |||||||||||||||||
seq2  GTGGGGCAT--GTTACCATTGGGAGCTTGTTCGGTATGCCGTGTCTGTCT  1094

seq1  TG-ATACCTCTGCAGGTATTTTTTTTCTCCTCATTTTAAATGATAC-TAG  1144
      || ||| ||||||| |||||||||| |||||||  ||||  ||||| |||
seq2  TGAATAACTCTGCA-GTATTTTTTTCCTCCTCA-ATTAATGGATACTTAG  1142

seq1  TG-AACTAATTCTGGCCAATGACTAATGAACAAACACATGTATGT-TTTC  1192
      || |||||  ||||| | ||||||||||||||| | ||||||||| ||||
seq2  TGAAACTA--TCTGGTCCATGACTAATGAACAATCCCATGTATGTGTTTC  1190

seq1  AC  1194
      ||
seq2  AC  1192


seq1: chr15_25003433_25004533
seq2: B6Ng01-329D24.g_64_1152 (reverse)

seq1  TATTCATGTTTAAAGTTCTCA--TATAACATATTTTTAAAAAAACTTAGC  48
      |||||||| ||||||||||||   ||||||||||||   |||||| ||||
seq2  TATTCATG-TTAAAGTTCTCAATAATAACATATTTT---AAAAACCTAGC  46

seq1  AGCCAAGTTTGGTGGTAAACCAAATGCAAAATTATAGAACTTTAATAAAC  98
      || ||||||| |||  || |||||||||||||||||||||||  ||||||
seq2  AG-CAAGTTT-GTGTAAACCCAAATGCAAAATTATAGAACTT--ATAAAC  92

seq1  TGATTTGTCAATATTTTTAAAAAATAACAGAAAAAAATTCCTTAACAACT  148
      ||||||||| ||||||||||||||| |||| |||||||||||| ||||||
seq2  TGATTTGTC-ATATTTTTAAAAAAT-ACAG-AAAAAATTCCTT-ACAACT  138

seq1  AAATGAGCTTGGCTTCAATCATACAAAATGGCTTAACACTAATATTAAAT  198
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  -AATGAGCTTGGCTTCAATCATACAAAATGGCTTAACACTAATATT-AAT  186

seq1  ATGCTACCCATGCATCGAAGAAGGAAAGGTCATGTGACTTCATCCTAGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACCCATGCATCGAAGAAGGAAAGGTCATGTGACTTCATCCTAGTT  236

seq1  TCCAAAAGAGTATTCAATAATATTCTCTAAGTGGATTTTCAAGCAAGTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGAGTATTCAATAATATTCTCTAAGTGGATTTTCAAGCAAGTAA  286

seq1  AGAATTGTATCATATTTTGACATTTTCATGATCCCAATAAATTGCAAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGTATCATATTTTGACATTTTCATGATCCCAATAAATTGCAAAAA  336

seq1  CTTGATTATCTTTTAAATTTTCTACATCCTGACTCAGGCTATAAAATTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTATCTTTTAAATTTTCTACATCCTGACTCAGGCTATAAAATTCA  386

seq1  TGCTTAATTATTGAATACTAGTTGTATTTTATTATAGGCAAATGCTACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAATTATTGAATACTAGTTGTATTTTATTATAGGCAAATGCTACCA  436

seq1  TTGTTTCTGTTATTAACTAAAACTCTTATATAAATTCTGTTATATTCTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTGTTATTAACTAAAACTCTTATATAAATTCTGTTATATTCTTA  486

seq1  AAATGTTAACTAGAGGCTACAAAATAGAAATTATAAAAAATAAAAAGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAACTAGAGGCTACAAAATAGAAATTATAAAAAATAAAAAGAAG  536

seq1  GAATAATTTATCATTCACTAACAATGTAATTGATTACCATAGCTGAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTTATCATTCACTAACAATGTAATTGATTACCATAGCTGAAAAA  586

seq1  CTATTAGCATACAGTGACTTGTAACAAAATTAATAATGAAATCAATATAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGCATACAGTGACTTGTAACAAAATTAATAATGAAATCAATATAT  636

seq1  TTCCTTCATAAAGCAACATCTATAAAAATGATAGTAGGTAATGTCTTATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCATAAAGCAACATCTATAAAAATGATAGTAGGTAATGTCTTATG  686

seq1  CATATCAGCATCAAGAAAGAACAAAATAGCTACTAAAATAATTTTAATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGCATCAAGAAAGAACAAAATAGCTACTAAAATAATTTTAATGA  736

seq1  TATAATGTGAGGGCACTAATAATAGAATGCTAACATTCTCCTAAGACTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTGAGGGCACTAATAATAGAATGCTAACATTCTCCTAAGACTTA  786

seq1  AAAGTAAACAAAATAAAAGGAAAGTAAGACTGTACTCTCCTGGGGATACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAACAAAATAAAAGGAAAGTAAGACTGTACTCTCCTGGGGATACT  836

seq1  ACTTTTAGTTTCTTTATCCTATACTATGTTAATGTAACATTTGTTACTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGTTTCTTTATCCTATACTATGTTAATGTAACATTTGTTACTTG  886

seq1  TTATTCAACAAATTTTTACTTTAAAAAATGGAGTGTTATTCTGACATTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAACAAATTTTTACTTTAAAAAATGGAGTGTTATTCTGACATTCA  936

seq1  TATGAGAAAACAAAATGCAAGAATGCTCAGGGCATTTTTGAAAAATAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAAAACAAAATGCAAGAATGCTCAGGGCATTTTTGAAAAATAAAA  986

seq1  CCAAATAACGATATAGCATATTTTCCAAGTCATAAAATCATAGTTAAAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAACGATATAGCATATTTTCCAAGTCATAAAATCATAGTTAAAAC  1036

seq1  ATTTTTAGCATTAAAAGCCATACAAGCAGATCAAAGTACAGAGAAGAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGCATTAAAAGCCATACAAGCAGATCAAAGTACAGAGAAGAGAA  1086

seq1  TTC  1101
      |||
seq2  TTC  1089


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