BAC Information

Click to search

BAC

Clone NameB6Ng01-331D19
Chromosome13 (Build37)15 (Build37)
Map Location 81,812,051 - 81,812,10612,110,702 - 12,111,783
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3
Downstream genePolr3g, 2900024O10Rik, Cetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331D19.bB6Ng01-331D19.g
ACCGA117663GA117664
length901,075
definitionB6Ng01-331D19.b B6Ng01-331D19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,812,051 - 81,812,106)(12,110,702 - 12,111,783)
sequence
acctaacagcatgaatagatgggttccgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtatatgtatgtgtgtgtgtgtgtgtctt
gaattcttgttggattactgtctctaaggcctgggagttttataattgtt
tctttatgtgtaataataaccgtactagtcattgtgatacttatttggga
agtaagcctttaaagaggttattaaaaagatttactgattcccacaccgg
aagttgctcttctagccgtgaaagaaggacggcgtggtcttcagtttgct
atgtccactaacaatatgtccgacccacgaaggcccaccaaagtgctgag
gtataagcctcccccgagtgagtgcaacccagctttagacgacccgactc
cggactacatgaatcttcttggcatgatcttcagcatgtgtggcctcatg
cttaagctgaagtggtgtgcttgggttgctatctactgctcctttatcag
ctttgccaactcgcggagctcggaggacactaagcagatgatgagtagct
tcatgctctctatctcggctgtggtgatgtcctatctgcagaatcctcag
cccatgacgcctccctggtgatgccacctaggagggttggatcctggact
caggcccaccttctctctggcctaacctttggctgcctccgccctccctc
agctgctgtcctaaactttcctgagtgtggtctctgggctcccagctgaa
tggaaggaagttggccctttctttggggccctgcttctgctttgacaaag
agataaacctgcagacttcccttttaccttctcccccccctccccgcctc
caacccagccactgttatgagaaacactgttcatgtttctacgtagtcac
ttgttttcttattgaaaccagttgatataaaactttccgctctgaaaaag
atttactgccgggtggtggtggcacaggcctcaggaagcataggcaggca
gacttctgagttccaggatagccaaagctacactgaaaaaccctatctgg
gaaaaaaaacaaacaaaaagatacacctgccagagatggtggaacacacc
tcactaatccatgctcagagatccaggcagtaggtttaggcataccgggc
taaacaatgaaattctgtcttctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81812051_81812106
seq2: B6Ng01-331D19.b_80_143 (reverse)

seq1  AAGACACACACACACACAC--------ACACACACACACACACACACACA  42
      |||||||||||||||||||        |||||||||||||||||||||||
seq2  AAGACACACACACACACACATACATATACACACACACACACACACACACA  50

seq1  CACACACACACACG  56
      ||||||||||||||
seq2  CACACACACACACG  64

seq1: chr15_12110702_12111783
seq2: B6Ng01-331D19.g_66_1140

seq1  GAATTCTTGTTGGATTACTGTCTCTAAGGCCTGGGAGTTTTATAATTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTGGATTACTGTCTCTAAGGCCTGGGAGTTTTATAATTGTT  50

seq1  TCTTTATGTGTAATAATAACCGTACTAGTCATTGTGATACTTATTTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTGTAATAATAACCGTACTAGTCATTGTGATACTTATTTGGGA  100

seq1  AGTAAGCCTTTAAAGAGGTTATTAAAAAGATTTACTGATTCCCACACCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCCTTTAAAGAGGTTATTAAAAAGATTTACTGATTCCCACACCGG  150

seq1  AAGTTGCTCTTCTAGCCGTGAAAGAAGGACGGCGTGGTCTTCAGTTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTCTTCTAGCCGTGAAAGAAGGACGGCGTGGTCTTCAGTTTGCT  200

seq1  ATGTCCACTAACAATATGTCCGACCCACGAAGGCCCACCAAAGTGCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCACTAACAATATGTCCGACCCACGAAGGCCCACCAAAGTGCTGAG  250

seq1  GTATAAGCCTCCCCCGAGTGAGTGCAACCCAGCTTTAGACGACCCGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGCCTCCCCCGAGTGAGTGCAACCCAGCTTTAGACGACCCGACTC  300

seq1  CGGACTACATGAATCTTCTTGGCATGATCTTCAGCATGTGTGGCCTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTACATGAATCTTCTTGGCATGATCTTCAGCATGTGTGGCCTCATG  350

seq1  CTTAAGCTGAAGTGGTGTGCTTGGGTTGCTATCTACTGCTCCTTTATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCTGAAGTGGTGTGCTTGGGTTGCTATCTACTGCTCCTTTATCAG  400

seq1  CTTTGCCAACTCGCGGAGCTCGGAGGACACTAAGCAGATGATGAGTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCAACTCGCGGAGCTCGGAGGACACTAAGCAGATGATGAGTAGCT  450

seq1  TCATGCTCTCTATCTCGGCTGTGGTGATGTCCTATCTGCAGAATCCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTCTCTATCTCGGCTGTGGTGATGTCCTATCTGCAGAATCCTCAG  500

seq1  CCCATGACGCCTCCCTGGTGATGCCACCTAGGAGGGTTGGATCCTGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGACGCCTCCCTGGTGATGCCACCTAGGAGGGTTGGATCCTGGACT  550

seq1  CAGGCCCACCTTCTCTCTGGCCTAACCTTTGGCTGCCTCCGCCCTCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCACCTTCTCTCTGGCCTAACCTTTGGCTGCCTCCGCCCTCCCTC  600

seq1  AGCTGCTGTCCTAAACTTTCCTGAGTGTGGTCTCTGGGCTCCCAGCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGTCCTAAACTTTCCTGAGTGTGGTCTCTGGGCTCCCAGCTGAA  650

seq1  TGGAAGGAAGTTGGCCCTTTCTTTGGGGCCCTGCTTCTGCTTTGACAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAAGTTGGCCCTTTCTTTGGGGCCCTGCTTCTGCTTTGACAAAG  700

seq1  AGATAAACCTGCAGACTTCCCTTTTACCTTCTCCCCCCCCTCCCCGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACCTGCAGACTTCCCTTTTACCTTCTCCCCCCCCTCCCCGCCTC  750

seq1  CAACCCAGCCACTGTTATGAGAAACACTGTTCATGTTTCTACGTAGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAGCCACTGTTATGAGAAACACTGTTCATGTTTCTACGTAGTCAC  800

seq1  TTGTTTTCTTATTGAAACCAGTTGATATAAAACTTTCCGCTCTGAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTTATTGAAACCAGTTGATATAAAACTTTCCGCTCTGAAAAAG  850

seq1  ATTTACTGCCGGGTGGTGGTGGCACAGGCCTCAGGAAGCATAGGCAGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGCCGGGTGGTGGTGGCACAGGCCTCAGGAAGCATAGGCAGGCA  900

seq1  GACTTCTGAGTTCCAGGATAGCCAAGGCTACACTGAAAAACCCTATCTGG  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GACTTCTGAGTTCCAGGATAGCCAAAGCTACACTGAAAAACCCTATCTGG  950

seq1  AAAAAAAACAAAACAAAAAAGATACACCTTGCCAGAGATGGTGGAACACA  1000
       |||||||  |||| ||||||||||||| |||||||||||||||||||||
seq2  GAAAAAAAACAAAC-AAAAAGATACACC-TGCCAGAGATGGTGGAACACA  998

seq1  -CTCACTTAATCCCAATGCTCAGGAGATCCAGGCAAGTAGGTTTAGGGCA  1049
       ||||| ||||||  ||||||| ||||||||||| |||||||||| ||||
seq2  CCTCAC-TAATCC--ATGCTCA-GAGATCCAGGC-AGTAGGTTTA-GGCA  1042

seq1  TACCGGGGCTAAACAATGAAATCCTGTC-TCTAA  1082
      |||| ||||||||||||||||| ||||| |||||
seq2  TACC-GGGCTAAACAATGAAATTCTGTCTTCTAA  1075