BAC Information

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BAC

Clone NameB6Ng01-331O08
Chromosome15 (Build37)
Map Location 84,438,004 - 84,606,582
singlet/doubletdoublet
Overlap geneArhgap8, 3110043J09Rik
Upstream geneScube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l
Downstream genePhf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331O08.bB6Ng01-331O08.g
ACCGA118148GA118149
length7301,149
definitionB6Ng01-331O08.b B6Ng01-331O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,605,856 - 84,606,582)(84,438,004 - 84,439,125)
sequence
gaattcattctttctctgaatgtcaaccacaagttctgggcagcctgccg
aacctctgcagtcaactggcaatcgctgtcatctccgcaaaagtgaatgc
ttggataatctatcccctgtgtccgggagattgagtcctcatgcaggctc
tgttgtcattgttttaagctgggacatgtcgtgtgcttcctacgtgtgac
tgccataatcactttcttttgctgtgggaacgatggggagattgtactga
gacacgggaaggtgacggggccacgcagcgctgggctgggattccacaat
taccgattgtgaagggaaactgttatcaaaggagcggcaggagaccgtct
tggggcacctctccaagtcaggaaatttgaaacatatatttcacagacac
gcatttccctgtaaaccccactgcataatgcatgaggcttgatttaatgt
cattgttaattcggggctcacaatggtgggctcttaagggagccatcatt
tttctttctttctttctccctggcagcagaactctgagaccctttggggt
tattcagcattctgagagcacagacgccatgggggggggggtgcagacgc
atggtggcttttccagaggctacgagcaggacaagggggcttggctgcct
cggaaggccatactgagccatgctggaagcccactttgttttgactattt
ggggtcagagaggaagggttgggggttgtc
gaattccacacccctaagccccttaccccataaaagcccctggcttttga
gcctcggggccggcatctgttatctcctgtgtgggattcatgccggtccg
gagctccgtaattaaacgtcctcatgtaattacagcgagtgggtcctcgt
gtttctttgggtgctctcacactcccgagactagagtgggggtccccgaa
agggggtcctacactatcagcatcccatagcccagaggccaggagcagac
aggctgctgcttctttttttttgttgcccccccccaattcataaaagctg
aatgaatttcatgaaagcagacatttttaaaaacttaaaatcaagaggga
aattgtttacaagggaaaaacaaaaaacaaaacaaaacaaaacaaaaaaa
aaaaaaaaccagttccctcagggtctgcccagcaaaaatccacaaggaat
tttctccttgcccctgggaccgccccttctgtccctgagacctccccctt
ctgcccctgggacttgcccttttttcccctgggacctgcccttttgtcca
tgcagtggcttgggggtcccaggacaggtggcaaggtatggtcctgacat
ttgggacttcacaccaagctgctgcctcccccaccctgacaggaagacca
catgaactgatcccaacatggctgtccaacaccaaatagtccatagcctg
tccaccagcagcctttgaccctgtgaactgagagactcaaaccatcctcc
cactgcagcctgctgtgtctgttgtctctccctggctctagctggtatgg
aattctcctcaaagtctctgtctacccgaacacgtagctgtccttttcaa
ggactggaagagtggtgtgccctccttcctcggcaacagatctccaaact
gctactaacaaacctgcaaagccacgtggtggggacgacttcagagctta
agaaatattccaagcaaggtagggtaacagtgcccaagggaaggcccccc
ccccccatttcccacccacgtcaacaagcctcactctgtcagcaggtagc
ttgttgagcgggaaccgtacattgttgaatgccaaaacttcaaggctctc
gaaccgagaattaaggagttttcattcctgggatcaagtagagtgacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_84605856_84606582
seq2: B6Ng01-331O08.b_49_778 (reverse)

seq1  GACAA-CCCCAACCCTTCCTCTCTGACCCCAAATAGTC-AAACAAAGTGG  48
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  GACAACCCCCAACCCTTCCTCTCTGACCCCAAATAGTCAAAACAAAGTGG  50

seq1  GCTTCCAGCATGGCTCAGTATGGCCTTCCGAGGCAGCC-AGCCCCCTTGT  97
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTTCCAGCATGGCTCAGTATGGCCTTCCGAGGCAGCCAAGCCCCCTTGT  100

seq1  CCTGCTCGTAGCCTCTGGAAAAGCCACCATGCGTCTGCACCCCCCCCCCC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCGTAGCCTCTGGAAAAGCCACCATGCGTCTGCACCCCCCCCCCC  150

seq1  ATGGCGTCTGTGCTCTCAGAATGCTGAATAACCCCAAAGGGTCTCAGAGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGTCTGTGCTCTCAGAATGCTGAATAACCCCAAAGGGTCTCAGAGT  200

seq1  TCTGCTGCCAGGGAGAAAGAAAGAAAGAAAAATGATGGCTCCCTTAAGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCCAGGGAGAAAGAAAGAAAGAAAAATGATGGCTCCCTTAAGAG  250

seq1  CCCACCATTGTGAGCCCCGAATTAACAATGACATTAAATCAAGCCTCATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATTGTGAGCCCCGAATTAACAATGACATTAAATCAAGCCTCATG  300

seq1  CATTATGCAGTGGGGTTTACAGGGAAATGCGTGTCTGTGAAATATATGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGCAGTGGGGTTTACAGGGAAATGCGTGTCTGTGAAATATATGTT  350

seq1  TCAAATTTCCTGACTTGGAGAGGTGCCCCAAGACGGTCTCCTGCCGCTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTCCTGACTTGGAGAGGTGCCCCAAGACGGTCTCCTGCCGCTCC  400

seq1  TTTGATAACAGTTTCCCTTCACAATCGGTAATTGTGGAATCCCAGCCCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAACAGTTTCCCTTCACAATCGGTAATTGTGGAATCCCAGCCCAG  450

seq1  CGCTGCGTGGCCCCGTCACCTTCCCGTGTCTCAGTACAATCTCCCCATCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCGTGGCCCCGTCACCTTCCCGTGTCTCAGTACAATCTCCCCATCG  500

seq1  TTCCCACAGCAAAAGAAAGTGATTATGGCAGTCACACGTAGGAAGCACAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAGCAAAAGAAAGTGATTATGGCAGTCACACGTAGGAAGCACAC  550

seq1  GACATGTCCCAGCTTAAAACAATGACAACAGAGCCTGCATGAGGACTCAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTCCCAGCTTAAAACAATGACAACAGAGCCTGCATGAGGACTCAA  600

seq1  TCTCCCGGACACAGGGGATAGATTATCCAAGCATTCACTTTTGCGGAGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCGGACACAGGGGATAGATTATCCAAGCATTCACTTTTGCGGAGAT  650

seq1  GACAGCGATTGCCAGTTGACTGCAGAGGTTCGGCAGGCTGCCCAGAACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCGATTGCCAGTTGACTGCAGAGGTTCGGCAGGCTGCCCAGAACTT  700

seq1  GTGGTTGACATTCAGAGAAAGAATGAATTC  727
      ||||||||||||||||||||||||||||||
seq2  GTGGTTGACATTCAGAGAAAGAATGAATTC  730

seq1: chr15_84438004_84439125
seq2: B6Ng01-331O08.g_70_1218

seq1  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAGCCCCTGGCTTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAGCCCCTGGCTTTTGA  50

seq1  GCCTCGGGGCCGGCATCTGTTATCTCCTGTGTGGGATTCATGCCGGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGGGGCCGGCATCTGTTATCTCCTGTGTGGGATTCATGCCGGTCCG  100

seq1  GAGCTCCGTAATTAAACGTCCTCATGTAATTACAGCGAGTGGGTCCTCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCGTAATTAAACGTCCTCATGTAATTACAGCGAGTGGGTCCTCGT  150

seq1  GTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTGGGGGTCCCCGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTGGGGGTCCCCGAA  200

seq1  AGGGGGTCCTACACTATCAGCATCCCATAGCCCAGAGGCCAGGAGCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTCCTACACTATCAGCATCCCATAGCCCAGAGGCCAGGAGCAGAC  250

seq1  AGGCTGCTGCTTCTTTTTTTTTGTTGCCCCCCCCCAATTCATAAAAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTGCTTCTTTTTTTTTGTTGCCCCCCCCCAATTCATAAAAGCTG  300

seq1  AATGAATTTCATGAAAGCAGACATTTTTAAAAACTTAAAATCAAGAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTTCATGAAAGCAGACATTTTTAAAAACTTAAAATCAAGAGGGA  350

seq1  AATTGTTTACAAGGGAAAAACAAAAAACAAAACAAAACAAAACAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTACAAGGGAAAAACAAAAAACAAAACAAAACAAAACAAAAAAA  400

seq1  AAAAAAAACCAGTTCCCTCAGGGTCTGCCCAGCAAAAATCCACAAGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCAGTTCCCTCAGGGTCTGCCCAGCAAAAATCCACAAGGAAT  450

seq1  TTTCTCCTTGCCCCTGGGACCGCCCCTTCTGTCCCTGAGACCTCCCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTGCCCCTGGGACCGCCCCTTCTGTCCCTGAGACCTCCCCCTT  500

seq1  CTGCCCCTGGGACTTGCCCTTTTTTCCCCTGGGACCTGCCCTTTTGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTGGGACTTGCCCTTTTTTCCCCTGGGACCTGCCCTTTTGTCCA  550

seq1  TGCAGTGGCTTGGGGGTCCCAGGACAGGTGGCAAGGTATGGTCCTGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGGCTTGGGGGTCCCAGGACAGGTGGCAAGGTATGGTCCTGACAT  600

seq1  TTGGGACTTCACACCAAGCTGCTGCCTCCCCCACCCTGACAGGAAGACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTTCACACCAAGCTGCTGCCTCCCCCACCCTGACAGGAAGACCA  650

seq1  CATGAACTGATCCCAACATGGCTGTCCAACACCAAATAGTCCATAGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTGATCCCAACATGGCTGTCCAACACCAAATAGTCCATAGCCTG  700

seq1  TCCACCAGCAGCCTTTGACCCTGTGAACTGAGAGACTCAAACCATCCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAGCAGCCTTTGACCCTGTGAACTGAGAGACTCAAACCATCCTCC  750

seq1  CACTGCAGCCTGCTGTGTCTGTTGTCTCTCCCTGGCTCTAGCTGGTATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGCCTGCTGTGTCTGTTGTCTCTCCCTGGCTCTAGCTGGTATGG  800

seq1  AATTCTCCTCAAAGTCTCTGTCTACCCGAACACGTAGCTGTCC-TTTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATTCTCCTCAAAGTCTCTGTCTACCCGAACACGTAGCTGTCCTTTTCAA  850

seq1  GGACTGGAAGAGTGGTGTGCCCTCC-TCCTCGGCAACAGATCTCCAAACT  898
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGACTGGAAGAGTGGTGTGCCCTCCTTCCTCGGCAACAGATCTCCAAACT  900

seq1  GCTACT-ACAAACCTGCAAAGCCACGT-GTGGGGACGACTTCAGAGC-TA  945
      |||||| |||||||||||||||||||| ||||||||||||||||||| ||
seq2  GCTACTAACAAACCTGCAAAGCCACGTGGTGGGGACGACTTCAGAGCTTA  950

seq1  AG-AATA-TCCAAGC-AGGTAGGG-AACAGGTGCCAA-GGAAG---CCCC  987
      || |||| ||||||| |||||||| |||||   |||| |||||   ||||
seq2  AGAAATATTCCAAGCAAGGTAGGGTAACAGTGCCCAAGGGAAGGCCCCCC  1000

seq1  CCCCCCA-TTCCCACCCACGTCA--CAGGCTCAC-CTGGCAGCAGGTAGC  1033
      ||||||| |||||||||||||||   || ||||| ||| |||||||||||
seq2  CCCCCCATTTCCCACCCACGTCAACAAGCCTCACTCTGTCAGCAGGTAGC  1050

seq1  T--GTGAGCGGG-ACCGTACAT--GTGAATGCAAAAAC-TCAAGCCTC--  1075
      |   |||||||| |||||||||   ||||||| ||||| ||||| |||  
seq2  TTGTTGAGCGGGAACCGTACATTGTTGAATGCCAAAACTTCAAGGCTCTC  1100

seq1  -GACGGAG-ATAAAGGAGTTTTCATT-CTGGAGTCAGGTAAGAGTGACTA  1122
        || ||| || |||||||||||||| ||||  ||| || ||||||||||
seq2  GAACCGAGAATTAAGGAGTTTTCATTCCTGGGATCAAGT-AGAGTGACTA  1149