BAC Information

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BAC

Clone NameB6Ng01-331P04
Chromosome15 (Build37)
Map Location 5,186,998 - 5,220,580
singlet/doubletdoublet
Overlap genePtger4
Upstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33
Downstream geneLOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331P04.bB6Ng01-331P04.g
ACCGA118186GA118187
length680987
definitionB6Ng01-331P04.b B6Ng01-331P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,186,998 - 5,187,677)(5,220,061 - 5,220,580)
sequence
gaattcacattttgtttttaaattaagtcaatgttgtaaaaaaaatgaat
gatgtattgtttcattttatcttcagccataattaaatttgacagctata
aaagggaatgaaaacaaggcatacacacacacacacacatatgtgtatat
atgtatgtatatatatacacatatatgtatatgtatatatatgttgtaat
gtctttcagtaaatgagagctcataggggtagcatatggatgggtataga
gtatagcattctgggctaggatacgattcagtggcctagcatgcatgaac
cctgaagcttaattcccaaaagtgcagaataaattcaataaataattcca
aattcacataaaaatttctcaaaagcccagttgtggaagcacgtgttgct
gatcaaacagaacctttgagtcagagggggcgggaggaaacttctaaaaa
ccttgctgaatacaaatgaagctgcttccttccacttcagaccacgagcg
gctgcaggccttgagactgtcacttgtgcctcatattggcagcgattcaa
cagttccgaacatcttaagactgatcagacagtaagcccaggagcactga
aatagcacttggaggggctccaataaagtgagaggtatggcttcaggaaa
gttgatgggagggtgtatggtaatgtggta
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
tagagattttgtccctgtgccctttagtgagtctagctaaggtttatcta
tcatgttgattttctcaaagaaccaacttctcgatgggttaattctttga
atagttcttcgtgatgcacttgggtgatttcacccctgagttagattatt
tgctgccgtctactcctcttggaatgaatttggcatgcctttatttctag
ggcttataggatgtgttgcaatctacctactatgtgatgcatccgatgtc
tctcgaagcactcgacgctatgagtttccctctagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_5186998_5187677
seq2: B6Ng01-331P04.b_46_725

seq1  GAATTCACATTTTGTTTTTAAATTAAGTCAATGTTGTAAAAAAAATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTTGTTTTTAAATTAAGTCAATGTTGTAAAAAAAATGAAT  50

seq1  GATGTATTGTTTCATTTTATCTTCAGCCATAATTAAATTTGACAGCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATTGTTTCATTTTATCTTCAGCCATAATTAAATTTGACAGCTATA  100

seq1  AAAGGGAATGAAAACAAGGCATACACACACACACACACATATGTGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAATGAAAACAAGGCATACACACACACACACACATATGTGTATAT  150

seq1  ATGTATGTATATATATACACATATATGTATATGTATATATATGTTGTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATATATATACACATATATGTATATGTATATATATGTTGTAAT  200

seq1  GTCTTTCAGTAAATGAGAGCTCATAGGGGTAGCATATGGATGGGTATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCAGTAAATGAGAGCTCATAGGGGTAGCATATGGATGGGTATAGA  250

seq1  GTATAGCATTCTGGGCTAGGATACGATTCAGTGGCCTAGCATGCATGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCATTCTGGGCTAGGATACGATTCAGTGGCCTAGCATGCATGAAC  300

seq1  CCTGAAGCTTAATTCCCAAAAGTGCAGAATAAATTCAATAAATAATTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCTTAATTCCCAAAAGTGCAGAATAAATTCAATAAATAATTCCA  350

seq1  AATTCACATAAAAATTTCTCAAAAGCCCAGTTGTGGAAGCACGTGTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACATAAAAATTTCTCAAAAGCCCAGTTGTGGAAGCACGTGTTGCT  400

seq1  GATCAAACAGAACCTTTGAGTCAGAGGGGGCGGGAGGAAACTTCTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAACAGAACCTTTGAGTCAGAGGGGGCGGGAGGAAACTTCTAAAAA  450

seq1  CCTTGCTGAATACAAATGAAGCTGCTTCCTTCCACTTCAGACCACGAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGAATACAAATGAAGCTGCTTCCTTCCACTTCAGACCACGAGCG  500

seq1  GCTGCAGGCCTTGAGACTGTCACTTGTGCCTCATATTGGCAGCGATTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGCCTTGAGACTGTCACTTGTGCCTCATATTGGCAGCGATTCAA  550

seq1  CAGTTCCGAACATCTTAAGACTGATCAGACAGTAAGCCCAGGAGCACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCGAACATCTTAAGACTGATCAGACAGTAAGCCCAGGAGCACTGA  600

seq1  AATAGCACTTGGAGGGGCTCCAATAAAGTGAGAGGTATGGCTTCAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCACTTGGAGGGGCTCCAATAAAGTGAGAGGTATGGCTTCAGGAAA  650

seq1  GTTGATGGGAGGGTGTATGGTAATGTGGTA  680
      ||||||||||||||||||||||||||||||
seq2  GTTGATGGGAGGGTGTATGGTAATGTGGTA  680

seq1: chr15_5220061_5220580
seq2: B6Ng01-331P04.g_534_1053 (reverse)

seq1  TTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAG  50
      |||| |||||||||||||||||   ||||| |||| ||| | | | ||| 
seq2  TTCT-AGAGGGAAACTCATAGCGTCGAGTG-CTTCGAGAGACATC-GGAT  47

seq1  AGAGCACATACTA-GCAGCTTGACAACACAT-CTAAAAGCTCTAGAAAAA  98
        | |||||| || | || ||| |||||||| ||| |||| ||||||| |
seq2  GCATCACATAGTAGGTAGATTG-CAACACATCCTATAAGCCCTAGAAATA  96

seq1  AAGGAA--GCAAATTCA-CCCAAGAGGAGTAGACGGCAGGAAATAATCAA  145
      |||| |   ||||||||  |||||||||||||||||||| |||||||| |
seq2  AAGGCATGCCAAATTCATTCCAAGAGGAGTAGACGGCAGCAAATAATCTA  146

seq1  ACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAA  195
      ||||||||||||||||| |||||| | | || ||||||||||||||||||
seq2  ACTCAGGGGTGAAATCACCCAAGT-GCATCACGAAGAACTATTCAAAGAA  195

seq1  TTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA  245
      |||||| | |||| ||||||||||||||||||||||||| ||||||||||
seq2  TTAACCCATCGAGAAGTTGGTTCTTTGAGAAAATCAACATGATAGATAAA  245

seq1  CCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATC-CTAATTAACA  294
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  -CCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCTCTAATTAACA  294

seq1  AAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAA  344

seq1  AACACTATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAA  394
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAA  394

seq1  CCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGA  444
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGA  444

seq1  ATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATA  494
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  ATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATA  494

seq1  GAAGCAGTTATTAATAGTCTCCCAGC  520
      |||||||||||||||||||||||| |
seq2  GAAGCAGTTATTAATAGTCTCCCAAC  520