BAC Information

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BAC

Clone NameB6Ng01-332L20
Chromosome15 (Build37)
Map Location 77,354,300 - 77,455,204
singlet/doubletdoublet
Overlap gene2210421G13Rik, 9130218O11Rik, LOC666661
Upstream geneLOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615
Downstream geneA330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332L20.bB6Ng01-332L20.g
ACCGA118754GA118755
length9401,016
definitionB6Ng01-332L20.b B6Ng01-332L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,354,300 - 77,355,247)(77,454,187 - 77,455,204)
sequence
gaattcacttggtaataaacaaagggtgagttggtcctgttgctgcagga
gaggaagggccatggctgcagcccacagcacccatggggaaggagaggga
ggagccgctgtgtcttctccatattcaaaactctctccctggcttttacc
cattatcagtgcctcagtttcccccgacatcccattgctgtctcctgcac
agtgcagcctgtgtgtttccagggctttccccatcctctagtcttctctg
cccctcccttcagactctcgctgctggcttctctttgacccacattaacc
ttgtctcagccacagaaacacaaactcctcagtgttcagttccacacacc
tgctctcacctgcttcccctccaacaaaatacccccactgttgctaactg
tgtccaggccatcttctttgacccctgtgctgcttagggacaggtgtccc
tgaagcaatcttactgcactcttgtaggtttggatgagttccactagaca
gaccatggggtaggtgactctctacccagtccatccaggaggccatcttg
tccctgctctacaccataggagaggctgactccatatccagcttgccctt
agccacacaatccagcccaaagggaggacagacggactgtggaacacaag
agtgtcctctagtgggcaagacctagaaactgcacaggtcatctcttact
ttccattggttagaacatgggaagaaaggccacctgagttgctgtggtgc
aggggacactacacaatgcactgcagcctcgaggagcctcagccgtcaga
agagaagcgcaacaagcaggagcaagaggcccattgtggaaatctcagca
tttcctctcaaccacaattaaagaaaacacttcttaaagaaggaatctta
aagttgggaggatatcattatctaagttaataccagaaaa
gaattcaaaacacacaggttgctaagcccttccactaaggaattctcagc
ctgagaaaggtgaggtgtggtggggattttactgtcacctctgaccccag
aggaaggagacaccaaaggcacaaatttccaggagggagggagaccccag
tcactcatgggaacggtgtatttgatgaaggctcagcaaacttctagaca
ctgaagtcagcttgacaagatttctgttccttgagaaaaccttaagtctt
gtaaactgttcccagtatggatggaccttggttttctatgctcttcctgt
gcaccttgtgcttgccctgcagagacttggcagaatcctaagtcaggttg
ggagaacatgcgagacctttcatgcttaacctccatcaggttcccatgtc
cagccattggtgggtttggcctgggctttcctcaggaggaatcccatgag
gtcagcttcacaatgcccctactctctgctctctactgcctgtcactcag
ctcatctgctgtgagtctccagctgaaggaactgacagacttgttgtgtc
ttttgtcttagagcagctgtcctgaacagtgccttcctgcctgtggtaac
gtcaatcagattaagtgttctttcccatgggcgctttcttggtgtgtgac
actccatgtgacctttcccatgaggctctgtgtcctgaggacaacagaag
attctgcttaaagccttagaaggacctgaggatgtggctaagttgctgca
gtgttttgtccacacaatcaggaggacccgagtccagtcttccagaggcc
acaatggaaagcaagattctgggcctaggcttgtcattccctgcttgggg
aatgcaagttaggaggtcctcagcttccttggttcagcaatctggtcaag
tgatgagtttccaagttaagtaaaaggcacttgtgatattgcatgggctg
gagagaggtttcttatttagatgtaatcttctttggcgacaagtgagttc
agttctgacctacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_77354300_77355247
seq2: B6Ng01-332L20.b_45_984

seq1  GAATTCACTTGGTAATAAACAAAGGGTGAGTTGGTCCTGTTGCTGCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGGTAATAAACAAAGGGTGAGTTGGTCCTGTTGCTGCAGGA  50

seq1  GAGGAAGGGCCATGGCTGCAGCCCACAGCACCCATGGGGAAGGAGAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGGCCATGGCTGCAGCCCACAGCACCCATGGGGAAGGAGAGGGA  100

seq1  GGAGCCGCTGTGTCTTCTCCATATTCAAAACTCTCTCCCTGGCTTTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCGCTGTGTCTTCTCCATATTCAAAACTCTCTCCCTGGCTTTTACC  150

seq1  CATTATCAGTGCCTCAGTTTCCCCCGACATCCCATTGCTGTCTCCTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCAGTGCCTCAGTTTCCCCCGACATCCCATTGCTGTCTCCTGCAC  200

seq1  AGTGCAGCCTGTGTGTTTCCAGGGCTTTCCCCATCCTCTAGTCTTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGCCTGTGTGTTTCCAGGGCTTTCCCCATCCTCTAGTCTTCTCTG  250

seq1  CCCCTCCCTTCAGACTCTCGCTGCTGGCTTCTCTTTGACCCACATTAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCTTCAGACTCTCGCTGCTGGCTTCTCTTTGACCCACATTAACC  300

seq1  TTGTCTCAGCCACAGAAACACAAACTCCTCAGTGTTCAGTTCCACACACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAGCCACAGAAACACAAACTCCTCAGTGTTCAGTTCCACACACC  350

seq1  TGCTCTCACCTGCTTCCCCTCCAACAAAATACCCCCACTGTTGCTAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCACCTGCTTCCCCTCCAACAAAATACCCCCACTGTTGCTAACTG  400

seq1  TGTCCAGGCCATCTTCTTTGACCCCTGTGCTGCTTAGGGACAGGTGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGCCATCTTCTTTGACCCCTGTGCTGCTTAGGGACAGGTGTCCC  450

seq1  TGAAGCAATCTTACTGCACTCTTGTAGGTTTGGATGAGTTCCACTAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAATCTTACTGCACTCTTGTAGGTTTGGATGAGTTCCACTAGACA  500

seq1  GACCATGGGGTAGGTGACTCTCTACCCAGTCCATCCAGGAGGCCATCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGGGGTAGGTGACTCTCTACCCAGTCCATCCAGGAGGCCATCTTG  550

seq1  TCCCTGCTCTACACCATAGGAGAGGCTGACTCCATATCCAGCTTGCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTCTACACCATAGGAGAGGCTGACTCCATATCCAGCTTGCCCTT  600

seq1  AGCCACACAATCCAGCCCAAAGGGAGGACAGACGGACTGTGGAACACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACAATCCAGCCCAAAGGGAGGACAGACGGACTGTGGAACACAAG  650

seq1  AGTGTCCTCTAGTGGGCAAGACCTAGAAACTGCACAGGTCATCTCTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTCTAGTGGGCAAGACCTAGAAACTGCACAGGTCATCTCTTACT  700

seq1  TTCCATTGGTTAGAACATGGGAAG-AAGGCCACCTGAGTTGCTGTGGTGC  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCCATTGGTTAGAACATGGGAAGAAAGGCCACCTGAGTTGCTGTGGTGC  750

seq1  AGGGGACACTACACAATGCACTGCAGCCTCAGAGGAGCCTCAGCCGTCAG  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGGGACACTACACAATGCACTGCAGCCTC-GAGGAGCCTCAGCCGTCAG  799

seq1  AAGAGAAGCGCAACAAGCAGGAGCAAGAGGCCCA-TGTGGAAATCTCAGG  848
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  AAGAGAAGCGCAACAAGCAGGAGCAAGAGGCCCATTGTGGAAATCTCAGC  849

seq1  CATTCCTCTCAAACCACAA-TAAAGAAAACACTCTTTAAAAGAGGAAATC  897
        |||||||| |||||||| ||||||||||||| | | ||||| | ||||
seq2  ATTTCCTCTC-AACCACAATTAAAGAAAACACT-TCTTAAAGAAGGAATC  897

seq1  TTAAAAGTTGGGAGGGAATTATCAATTATCTATAGTTAATAACCCAGAAA  947
      || ||||||||||||    |||| |||||||| ||||||||  |||||||
seq2  TT-AAAGTTGGGAGG---ATATC-ATTATCTA-AGTTAATA--CCAGAAA  939

seq1  A  948
      |
seq2  A  940

seq1: chr15_77454187_77455204
seq2: B6Ng01-332L20.g_67_1082 (reverse)

seq1  AATGTAGGGTCTGGGACCTGAACTCACTTGTTCTGCAAGAGAACCATGCA  50
      ||||||||   |  || ||||||||||||||   || | ||||   | ||
seq2  AATGTAGG---TCAGAACTGAACTCACTTGT--CGCCAAAGAAGATTACA  45

seq1  TCTGAATAAAGAAACTCTCTCTCCAGCCCATTACAATA--ACAAGTGCC-  97
      ||| ||| ||||||| |||||||||||||| | |||||  ||||||||| 
seq2  TCTAAAT-AAGAAAC-CTCTCTCCAGCCCA-TGCAATATCACAAGTGCCT  92

seq1  TTTACTTACCT--GGAACTCATCACTGTGACCAGATTGGCTG-ACCAGAG  144
      |||||||| ||  | ||||||||||| |||||||||| |||| ||||  |
seq2  TTTACTTAACTTGGAAACTCATCACT-TGACCAGATT-GCTGAACCAAGG  140

seq1  AGCATGAGGACCCTCCTAACCTTGCA-TCCCCAAGCAGGG-ATGACAGGC  192
      |   |||||| |||||||| |||||| ||||||||||||| |||||| ||
seq2  AAGCTGAGGA-CCTCCTAA-CTTGCATTCCCCAAGCAGGGAATGACAAGC  188

seq1  CTAGGCCCAGAATCTGGCTTTCCAATGTGGCCTCTGGAAGACTGAACTCG  242
      ||||||||||||||| |||||||| ||||||||||||||||||| |||||
seq2  CTAGGCCCAGAATCTTGCTTTCCATTGTGGCCTCTGGAAGACTGGACTCG  238

seq1  GGTCCTCCTGA-TGTGT-GAC-AAACACTGCAGCAACTTAGCCACATCCT  289
      ||||||||||| ||||| ||| ||||||||||||||||||||||||||||
seq2  GGTCCTCCTGATTGTGTGGACAAAACACTGCAGCAACTTAGCCACATCCT  288

seq1  CAGGTCCCTTCTAAGGCTTTAAGCAGAATCTTCTGTTGTCCTCAGGACAC  339
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGT-CCTTCTAAGGCTTTAAGCAGAATCTTCTGTTGTCCTCAGGACAC  337

seq1  AGAGCCTCATGGGAAAGGTCACATGGAGTGTCACACACCAAGAAAGCGCC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCATGGGAAAGGTCACATGGAGTGTCACACACCAAGAAAGCGCC  387

seq1  CATGGGAAAGAACACTTAATCTGATTGACGTTACCACAGGCAGGAAGGCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAAAGAACACTTAATCTGATTGACGTTACCACAGGCAGGAAGGCA  437

seq1  CTGTTCAGGACAGCTGCTCTAAGACAAAAGACACAACAAGTCTGTCAGTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGACAGCTGCTCTAAGACAAAAGACACAACAAGTCTGTCAGTT  487

seq1  CCTTCAGCTGGAGACTCACAGCAGATGAGCTGAGTGACAGGCAGTAGAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCTGGAGACTCACAGCAGATGAGCTGAGTGACAGGCAGTAGAGA  537

seq1  GCAGAGAGTAGGGGCATTGTGAAGCTGACCTCATGGGATTCCTCCTGAGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGTAGGGGCATTGTGAAGCTGACCTCATGGGATTCCTCCTGAGG  587

seq1  AAAGCCCAGGCCAAACCCACCAATGGCTGGACATGGGAACCTGATGGAGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAGGCCAAACCCACCAATGGCTGGACATGGGAACCTGATGGAGG  637

seq1  TTAAGCATGAAAGGTCTCGCATGTTCTCCCAACCTGACTTAGGATTCTGC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATGAAAGGTCTCGCATGTTCTCCCAACCTGACTTAGGATTCTGC  687

seq1  CAAGTCTCTGCAGGGCAAGCACAAGGTGCACAGGAAGAGCATAGAAAACC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCTGCAGGGCAAGCACAAGGTGCACAGGAAGAGCATAGAAAACC  737

seq1  AAGGTCCATCCATACTGGGAACAGTTTACAAGACTTAAGGTTTTCTCAAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCATCCATACTGGGAACAGTTTACAAGACTTAAGGTTTTCTCAAG  787

seq1  GAACAGAAATCTTGTCAAGCTGACTTCAGTGTCTAGAAGTTTGCTGAGCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAATCTTGTCAAGCTGACTTCAGTGTCTAGAAGTTTGCTGAGCC  837

seq1  TTCATCAAATACACCGTTCCCATGAGTGACTGGGGTCTCCCTCCCTCCTG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAATACACCGTTCCCATGAGTGACTGGGGTCTCCCTCCCTCCTG  887

seq1  GAAATTTGTGCCTTTGGTGTCTCCTTCCTCTGGGGTCAGAGGTGACAGTA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGTGCCTTTGGTGTCTCCTTCCTCTGGGGTCAGAGGTGACAGTA  937

seq1  AAATCCCCACCACACCTCACCTTTCTCAGGCTGAGAATTCCTTAGTGGAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCACCACACCTCACCTTTCTCAGGCTGAGAATTCCTTAGTGGAA  987

seq1  GGGCTTAGCAACCTGTGTGTTTTGAATTC  1018
      |||||||||||||||||||||||||||||
seq2  GGGCTTAGCAACCTGTGTGTTTTGAATTC  1016