BAC Information

Click to search

BAC

Clone NameB6Ng01-332N05
Chromosome15 (Build37)
Map Location 29,936,578 - 30,058,771
singlet/doubletdoublet
Overlap geneLOC382975
Upstream genenone
Downstream geneCtnnd2, 9630009A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332N05.bB6Ng01-332N05.g
ACCGA118818GA118819
length1,149996
definitionB6Ng01-332N05.b B6Ng01-332N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,936,578 - 29,937,739)(30,058,221 - 30,058,771)
sequence
gaattctgaagatcatattaaacaaatggctcagttattaaatctactgc
acaagcacagggcctcggggtgtttagcagtgctcacacatggttcactg
ccattcatgactctacttccagggggtctgaaacattcctctgacctacc
agacactgggcatacgtgtggtatggcagataatacttcaaaagtctctt
tcaagaataatgacatttttcttctgaaaggaatttatatggttaatttt
gaagtttcagatgaaaattattcacatgagtataatttaaatttagatgg
ctatatctagataacaagaagcttattcatgagatttcttattagtcttg
attggtattgctttcttcattctattataatggcaattacacagatccat
taatcccagaatattactgaacatttcagatttactaagatagaccctat
aaatatcaactggatatttaaattgatcatttaggttcataaatgtaaag
taaagagttagttgaaattttgggagagatatcaatgtactaacaaattt
ctatttctgtatcaattgccatggcattcacacacatatattgaagctta
aattgaccttgatgtttcaatgtcaacagaaaatgattcagggatggctt
aaaatgcactgggggctgagaacttctctcccctgttctggcctttcctt
gaagtatcttcatcttacacttctcagtcactttcactgaaataattcac
atttcccctaaatcaagcacagaaaagttgaaattttctcttgtttctct
ttagtctatgatagagctatgacagatgcttttgaaataacagcgctgag
gctatgctgctctgaactgcaaaatgcagctgtggtttgattgtgttaac
atagacaggagctctctccacaagcattggatagtcatgagctattatat
acagagtcagacaaataactaaacgatcgacccaatgataaaaatgtagt
gtgtgtggtaacattgggaatgaaatgtgtctaggtcatatgttcacaaa
cggtctgtatggtattctggagagtccatagcattccctagaacgcatag
aatgaaggaatgtcgggtgtagtgaaacagtttgcctctgttactgaca

gaattcatttcatggttttgcatgtacatgtacttcgggttggacacttg
gcattagacaacccatcagggggatcatccctgaagaaaattggttctcc
atctctcagtagctattggttgtccttaggtgtcctaggggtggggcctt
atgagatttcccttgttcactttggcatgttgccactgttcagctcttat
ttagacaacaatattgctgagatttcttggattcagttttctggaatatc
gggaagtcattaccaaccagaggatttcctgaccctttggcttttctatt
cacacttctatgatatgccctgagctttaaggctaattatcacttcatgg
gtgtaccaaatgagcccaagcaccacacagacacttattctctgcacttt
ggcccattgaagatcttcaaagtagcctgcagtttaagaagattcttcga
tgagcactaaaagcatacttatttatggataagtattgagagtacagtta
taaatatattgacttaggaaagtgacagcagtaggttcttctttagcacc
ccaaaccactcctgccagtggtgattgtccaaaactggtatcctccgatg
gagtgtaccttaaatccaacaatatagctgcttgttacccctaagataaa
aggacctctgttgtgccaatgggcatgtcttgtcaggctggtcactattg
tggtcataatcttactgaagatattattacaactctggacatagcacttg
taggaacagagatagaattagcttagaagcctcctccctggggactatgt
ctcaaaatgagagaactgtgctatggaaggagaaaggcacacacggcaat
gggaagtgagtcccaggcattgaactcaggtctttaggtttacaaggcaa
ccacttgactaatgaagcccccccccccatcctacgatgaaaaatagttt
tgtaccattataaaaagttaacttgtccttgaagctaacaaagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29936578_29937739
seq2: B6Ng01-332N05.b_48_1196

seq1  GAATTCTGAAGATCATATTAAACAAATGGCTCAGTTATTAAATCTACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGATCATATTAAACAAATGGCTCAGTTATTAAATCTACTGC  50

seq1  ACAAGCACAGGGCCTCGGGGTGTTTAGCAGTGCTCACACATGGTTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACAGGGCCTCGGGGTGTTTAGCAGTGCTCACACATGGTTCACTG  100

seq1  CCATTCATGACTCTACTTCCAGGGGGTCTGAAACATTCCTCTGACCTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATGACTCTACTTCCAGGGGGTCTGAAACATTCCTCTGACCTACC  150

seq1  AGACACTGGGCATACGTGTGGTATGGCAGATAATACTTCAAAAGTCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGGGCATACGTGTGGTATGGCAGATAATACTTCAAAAGTCTCTT  200

seq1  TCAAGAATAATGACATTTTTCTTCTGAAAGGAATTTATATGGTTAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATAATGACATTTTTCTTCTGAAAGGAATTTATATGGTTAATTTT  250

seq1  GAAGTTTCAGATGAAAATTATTCACATGAGTATAATTTAAATTTAGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCAGATGAAAATTATTCACATGAGTATAATTTAAATTTAGATGG  300

seq1  CTATATCTAGATAACAAGAAGCTTATTCATGAGATTTCTTATTAGTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTAGATAACAAGAAGCTTATTCATGAGATTTCTTATTAGTCTTG  350

seq1  ATTGGTATTGCTTTCTTCATTCTATTATAATGGCAATTACACAGATCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTATTGCTTTCTTCATTCTATTATAATGGCAATTACACAGATCCAT  400

seq1  TAATCCCAGAATATTACTGAACATTTCAGATTTACTAAGATAGACCCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGAATATTACTGAACATTTCAGATTTACTAAGATAGACCCTAT  450

seq1  AAATATCAACTGGATATTTAAATTGATCATTTAGGTTCATAAATGTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAACTGGATATTTAAATTGATCATTTAGGTTCATAAATGTAAAG  500

seq1  TAAAGAGTTAGTTGAAATTTTGGGAGAGATATCAATGTACTAACAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTTAGTTGAAATTTTGGGAGAGATATCAATGTACTAACAAATTT  550

seq1  CTATTTCTGTATCAATTGCCATGGCATTCACACACATATATTGAAGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTGTATCAATTGCCATGGCATTCACACACATATATTGAAGCTTA  600

seq1  AATTGACCTTGATGTTTCAATGTCAACAGAAAATGATTCAGGGATGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACCTTGATGTTTCAATGTCAACAGAAAATGATTCAGGGATGGCTT  650

seq1  AAAATGCACTGGGGGCTGAGAACTTCTCTCCCCTGTTCTGGCCTTTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCACTGGGGGCTGAGAACTTCTCTCCCCTGTTCTGGCCTTTCCTT  700

seq1  GAAGTATCTTCATCTTACACTTCTCAGTCACTTTCACTGAAATAATTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATCTTCATCTTACACTTCTCAGTCACTTTCACTGAAATAATTCAC  750

seq1  ATTTCCCCTAAATCAAGCACAGAAAAGTTGAAATTTTCTCTTGTTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCCTAAATCAAGCACAGAAAAGTTGAAATTTTCTCTTGTTTCTCT  800

seq1  TTAGTCTATGATAGAGCTATGACAGATGCTTTTGAAATAACAGCGCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTATGATAGAGCTATGACAGATGCTTTTGAAATAACAGCGCTGAG  850

seq1  GCTATGCTGCTCTGAACTGCAAAATGCAGCTGTGGTTTGATTGTGTTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCTGCTCTGAACTGCAAAATGCAGCTGTGGTTTGATTGTGTTAAC  900

seq1  ATAGACAGGAGCTCTCTCCACAAGCATTGGATAGTCATGAGCTATTATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGGAGCTCTCTCCACAAGCATTGGATAGTCATGAGCTATTATAT  950

seq1  ACAGAGTCAGACAAAATAACTAAACGATCGACCCAATGAATAAAAAATGT  1000
      |||||||||||| ||||||||||||||||||||||||||   ||||||||
seq2  ACAGAGTCAGAC-AAATAACTAAACGATCGACCCAATGA--TAAAAATGT  997

seq1  AGTGTGTTGTGGTAACAATTGGGAATGAAATGTGTCTAGGTCATAATTGT  1050
      |||||| ||||||||| ||||||||||||||||||||||||||||  |||
seq2  AGTGTG-TGTGGTAAC-ATTGGGAATGAAATGTGTCTAGGTCATA--TGT  1043

seq1  TCACAAACGGTCTGTATGGTTATTCTGGAGAGTCCATAGCAATTTCCCTA  1100
      ||||||||||||||||||| |||||||||||||||||||||  |||||||
seq2  TCACAAACGGTCTGTATGG-TATTCTGGAGAGTCCATAGCA--TTCCCTA  1090

seq1  GAAACGGCCATTAGATGAGAGAATGTCGGGGTGAGTGAAACAGTTTTGCT  1150
      | ||||  |||   ||||  ||||||||||   |||||||||||||  ||
seq2  G-AACG--CATAGAATGAAGGAATGTCGGGTGTAGTGAAACAGTTTGCCT  1137

seq1  CTGTTACTGACA  1162
      ||||||||||||
seq2  CTGTTACTGACA  1149


seq1: chr15_30058221_30058771
seq2: B6Ng01-332N05.g_67_617 (reverse)

seq1  GGGTGCTAAAGAAGAACCTACTGCTGTCACTTTCCTAAGTCAATATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTAAAGAAGAACCTACTGCTGTCACTTTCCTAAGTCAATATATTT  50

seq1  ATAACTGTACTCTCAATACTTATCCATAAATAAGTATGCTTTTAGTGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTACTCTCAATACTTATCCATAAATAAGTATGCTTTTAGTGCTC  100

seq1  ATCGAAGAATCTTCTTAAACTGCAGGCTACTTTGAAGATCTTCAATGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAAGAATCTTCTTAAACTGCAGGCTACTTTGAAGATCTTCAATGGGC  150

seq1  CAAAGTGCAGAGAATAAGTGTCTGTGTGGTGCTTGGGCTCATTTGGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGCAGAGAATAAGTGTCTGTGTGGTGCTTGGGCTCATTTGGTACA  200

seq1  CCCATGAAGTGATAATTAGCCTTAAAGCTCAGGGCATATCATAGAAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAAGTGATAATTAGCCTTAAAGCTCAGGGCATATCATAGAAGTGT  250

seq1  GAATAGAAAAGCCAAAGGGTCAGGAAATCCTCTGGTTGGTAATGACTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAAAAGCCAAAGGGTCAGGAAATCCTCTGGTTGGTAATGACTTCC  300

seq1  CGATATTCCAGAAAACTGAATCCAAGAAATCTCAGCAATATTGTTGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATATTCCAGAAAACTGAATCCAAGAAATCTCAGCAATATTGTTGTCTA  350

seq1  AATAAGAGCTGAACAGTGGCAACATGCCAAAGTGAACAAGGGAAATCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGCTGAACAGTGGCAACATGCCAAAGTGAACAAGGGAAATCTCA  400

seq1  TAAGGCCCCACCCCTAGGACACCTAAGGACAACCAATAGCTACTGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCCCACCCCTAGGACACCTAAGGACAACCAATAGCTACTGAGAGA  450

seq1  TGGAGAACCAATTTTCTTCAGGGATGATCCCCCTGATGGGTTGTCTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACCAATTTTCTTCAGGGATGATCCCCCTGATGGGTTGTCTAATG  500

seq1  CCAAGTGTCCAACCCGAAGTACATGTACATGCAAAACCATGAAATGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGTCCAACCCGAAGTACATGTACATGCAAAACCATGAAATGAATT  550

seq1  C  551
      |
seq2  C  551


| Home | SequenceCutter | Blast | Download |