BAC Information

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BAC

Clone NameB6Ng01-333H19
Chromosome15 (Build37)
Map Location 51,735,025 - 51,843,869
singlet/doubletdoublet
Overlap geneRad21
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik
Downstream geneAard, LOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6, LOC100039745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333H19.bB6Ng01-333H19.g
ACCGA119276GA119277
length1,1941,052
definitionB6Ng01-333H19.b B6Ng01-333H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,735,025 - 51,736,234)(51,842,811 - 51,843,869)
sequence
gaattccagggagaagtgggtgatctgacttatcttgattggttggctct
atttccagggctatggacatctttgggattggtcaaagctttgggggagt
cttggggaattaccattcttgattagctactcttggctcaggctaggtgg
tgtggctattcttgggagatcctgattggccacccaaaaggcatgttttc
ttttcctggaatttgatttgttttggatttgtcccagtattaggaaacag
aaatttaggactagtccttaaactaccagcttggagcctgccatggagtc
tgcccggcttagcccctggccttctcagaagagggtttttcaagggtgta
actgagcaagacttcttgataagtagaggcaagatgttctacttagaggg
aacagccgaacagctagtacatagattctgaggatggagacaacaaagtt
tgtttaatggactacagtggtctgatgtgagaagtgggaaggaggggtgc
aggcttttggtacaagggagaacaatctaccaggggatagagtagtgact
cagggaaaagagggggaacatcatgaaatagtacagggacaagtttcaca
tagaattaaaatgagtcactgcaggcagaaatgtcaagagacatagtcta
acttgactgctaaaagcatcacttgctcttttatgcccaggacagactac
ggctgggataaaagtggatgcctgcaggctggttagaaagctattgctgg
ttggtggccatgtacagtgtctagaggcactcttgttctagatgaaccct
gacggcagagccagcaggacccgctcaccagttagctggagagttagtta
tttttgtaatgtcatcataagaatgttagagagcgggtggcttggaatcg
gggaagtctggtgtattgtagttctggagacaagaggtctaatcaagatg
tagatgggggccatccttgtggggtcatgctgcccccttcccagtttgtg
gtaatctggggtccttagttatggcagccacactgcatctggagtctctg
ctgttactcccttcccttggggagctgttttgtacttctctttcttatga
gacctcttcatctcagagcaaggagcacagcttgatcaacatgctcatct
caactagtttagcgaatgatcttatggcatgaactgtttggggg

gaattccatgtttaccgttcactgtgaaggtgaagttgtttctatagggg
aatgggtctatggcacagtgtctgtatttctgccacctgatgagagtgct
cttgcaaagtggggttctgtcagcctgccaggttaataactagatcaact
gtcagtgataggagtcaatcagtcatccttatctgaatcatctccttgtt
aaaacgcattttctgaatcctataaagacaaattaaagtaaaacgggatg
agtatcacgtaattaaatcaatgagcaaactacagccttcgtcaagacca
aattcagaccagcagcaaaggattttctctattggagaactgtcacttac
cctgaaactggagctactagacaaaatgtagttctgtgaactattcacag
ataagaactagttcccagatatttcccgttatttaaagtgaaggagtcat
ttgcctctgagctacactcagaaaacatcacatagtactttccttggcat
aaatgaactgagaatattacatgaaagccaatttggttttcctcttggaa
actttgacttctgagatggggaaaatttcctgcagtgtaatggattcagc
tacatgaatgcagacactaataatctatcttgataggaacatggggagtt
actgcttacatctttcacctctactttaagagagaggttaatacactgta
ctgtatttcaggaagtgaactacttgtggagagctttgggggccgcttct
agaaacttggtgtgaattaacaacgggccaggacatggaagtaagctcag
gcaggaatctgactttgggctagaacaaagaagtaggctttaggcaaaaa
tttgaccttgtgctagtacacagaagtaggctcaggtatcttgatcattt
tgataagcccctagaaacagtgatcatgggactttgttattgccttgtta
gttccttaacctagaactgaccttatattgcatgtacttaaaatgggttt
aaaagcagactggaaaaaaaataaactgcttcaactcagactgctgggct
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_51735025_51736234
seq2: B6Ng01-333H19.b_51_1244

seq1  GAATTCCAGGGAGAAGTGGGTGATCTGACTTATCTTGATTGGTTGGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGAAGTGGGTGATCTGACTTATCTTGATTGGTTGGCTCT  50

seq1  ATTTCCAGGGCTATGGACATCTTTGGGATTGGTCAAAGCTTTGGGGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGGGCTATGGACATCTTTGGGATTGGTCAAAGCTTTGGGGGAGT  100

seq1  CTTGGGGAATTACCATTCTTGATTAGCTACTCTTGGCTCAGGCTAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGAATTACCATTCTTGATTAGCTACTCTTGGCTCAGGCTAGGTGG  150

seq1  TGTGGCTATTCTTGGGAGATCCTGATTGGCCACCCAAAAGGCATGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTATTCTTGGGAGATCCTGATTGGCCACCCAAAAGGCATGTTTTC  200

seq1  TTTTCCTGGAATTTGATTTGTTTTGGATTTGTCCCAGTATTAGGAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGGAATTTGATTTGTTTTGGATTTGTCCCAGTATTAGGAAACAG  250

seq1  AAATTTAGGACTAGTCCTTAAACTACCAGCTTGGAGCCTGCCATGGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGGACTAGTCCTTAAACTACCAGCTTGGAGCCTGCCATGGAGTC  300

seq1  TGCCCGGCTTAGCCCCTGGCCTTCTCAGAAGAGGGTTTTTCAAGGGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGGCTTAGCCCCTGGCCTTCTCAGAAGAGGGTTTTTCAAGGGTGTA  350

seq1  ACTGAGCAAGACTTCTTGATAAGTAGAGGCAAGATGTTCTACTTAGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAAGACTTCTTGATAAGTAGAGGCAAGATGTTCTACTTAGAGGG  400

seq1  AACAGCCGAACAGCTAGTACATAGATTCTGAGGATGGAGACAACAAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCGAACAGCTAGTACATAGATTCTGAGGATGGAGACAACAAAGTT  450

seq1  TGTTTAATGGACTACAGTGGTCTGATGTGAGAAGTGGGAAGGAGGGGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATGGACTACAGTGGTCTGATGTGAGAAGTGGGAAGGAGGGGTGC  500

seq1  AGGCTTTTGGTACAAGGGAGAACAATCTACCAGGGGATAGAGTAGTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTGGTACAAGGGAGAACAATCTACCAGGGGATAGAGTAGTGACT  550

seq1  CAGGGAAAAGAGGGGGAACATCATGAAATAGTACAGGGACAAGTTTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAAGAGGGGGAACATCATGAAATAGTACAGGGACAAGTTTCACA  600

seq1  TAGAATTAAAATGAGTCACTGCAGGCAGAAATGTCAAGAGACATAGTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTAAAATGAGTCACTGCAGGCAGAAATGTCAAGAGACATAGTCTA  650

seq1  ACTTGACTGCTAAAAGCATCACTTGCTCTTTTATGCCCAGGACAGACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACTGCTAAAAGCATCACTTGCTCTTTTATGCCCAGGACAGACTAC  700

seq1  GGCTGGGATAAAAGTGGATGCCTGCAGGCTGGTTAGAAAGCTATTGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGATAAAAGTGGATGCCTGCAGGCTGGTTAGAAAGCTATTGCTGG  750

seq1  TTGGTGGCCATGTACAGTGTCTAGAGGCACTCTTGTTCTAGATGAACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCCATGTACAGTGTCTAGAGGCACTCTTGTTCTAGATGAACCCT  800

seq1  GACGGCAGAGCCAGCAGGACCCGCTCACCAGTTAGCTGGAGAGTTAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCAGAGCCAGCAGGACCCGCTCACCAGTTAGCTGGAGAGTTAGTTA  850

seq1  TTTTTGTAATGTCATCATAAGAATGTTAGAGAGCGGGTGGCTTGGAATCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAATGTCATCATAAGAATGTTAGAGAGCGGGTGGCTTGGAATCG  900

seq1  GGGAAGTCTGGTGTATTGTAGTTCTGGAGACAAGAGGTCTAATCAAGATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTCTGGTGTATTGTAGTTCTGGAGACAAGAGGTCTAATCAAGATG  950

seq1  TAGATGGGGGCCATCCTTTGTGGGGTCATGCTGCCCCCTTCCCAGTTTTG  1000
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  TAGATGGGGGCCATCC-TTGTGGGGTCATGCTGCCCCCTTCCCAG-TTTG  998

seq1  TGGTTAATCCTTGGGGTTCCTTTAGTTATGGCAGCCACACTGCCATCT-G  1049
      ||| |||||  ||||||  | ||||||||||||||||||||| ||||| |
seq2  TGG-TAATC--TGGGGT--CCTTAGTTATGGCAGCCACACTG-CATCTGG  1042

seq1  AGTCTCTGCTG-TACTCCCCTCCCCTTGGGAGCCTGTTTTTGTACCTTCC  1098
      ||||||||||| ||||||| |||| | ||||| ||| ||||||| |||| 
seq2  AGTCTCTGCTGTTACTCCCTTCCCTTGGGGAG-CTG-TTTTGTA-CTTCT  1089

seq1  TCTTCTTATGAAGACACTCTTCATCTCAGAGCAA-GAGCACAGCTTGATC  1147
        |||||||| |||| |||||||||||||||||| |||||||||||||| 
seq2  CTTTCTTATG-AGAC-CTCTTCATCTCAGAGCAAGGAGCACAGCTTGAT-  1136

seq1  CAACATGCCCTCATCTCAACTAGTTATACACGAAATGATCTTATGCAGTG  1197
      |||||||  |||||||||||||||| ||  || ||||||||||||   ||
seq2  CAACATG--CTCATCTCAACTAGTT-TA-GCG-AATGATCTTATGGCATG  1181

seq1  AGTTGTTTGGGGG  1210
      |  ||||||||||
seq2  AACTGTTTGGGGG  1194


seq1: chr15_51842811_51843869
seq2: B6Ng01-333H19.g_66_1117 (reverse)

seq1  TGAGCCCAGCCAGTTCTGAGGTTGAAGCAGGTTTATTTTTTTTCCCAGTC  50
      ||||||||| ||| ||||| ||||||||| ||||||||||||| ||||||
seq2  TGAGCCCAG-CAG-TCTGA-GTTGAAGCA-GTTTATTTTTTTT-CCAGTC  45

seq1  TGCTTTTAAA-CCATTTTAAGTACATGCAAATAATAAGGTCAGTTCTAGG  99
      |||||||||| |||||||||||||||||||   |||||||||||||||||
seq2  TGCTTTTAAACCCATTTTAAGTACATGCAA--TATAAGGTCAGTTCTAGG  93

seq1  TTAAGGAACTAACAAGGCAATAAACAAAGTCCCATGATCACTGTTTCTAG  149
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAAGGAACTAACAAGGCAAT-AACAAAGTCCCATGATCACTGTTTCTAG  142

seq1  GGGCTTATCAAAATGATCAAGATACCTGAGCCTACTTCTGTGTACTAGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTATCAAAATGATCAAGATACCTGAGCCTACTTCTGTGTACTAGCA  192

seq1  CAAGGTCAAATTTTTGCCTAAAGCCTACTTCTTTGTTCTAGCCCAAAGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCAAATTTTTGCCTAAAGCCTACTTCTTTGTTCTAGCCCAAAGTC  242

seq1  AGATTCCTGCCTGAGCTTACTTCCATGTCCTGGCCCGTTGTTAATTCACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTGCCTGAGCTTACTTCCATGTCCTGGCCCGTTGTTAATTCACA  292

seq1  CCAAGTTTCTAGAAGCGGCCCCCAAAGCTCTCCACAAGTAGTTCACTTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTCTAGAAGCGGCCCCCAAAGCTCTCCACAAGTAGTTCACTTCC  342

seq1  TGAAATACAGTACAGTGTATTAACCTCTCTCTTAAAGTAGAGGTGAAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACAGTACAGTGTATTAACCTCTCTCTTAAAGTAGAGGTGAAAGA  392

seq1  TGTAAGCAGTAACTCCCCATGTTCCTATCAAGATAGATTATTAGTGTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCAGTAACTCCCCATGTTCCTATCAAGATAGATTATTAGTGTCTG  442

seq1  CATTCATGTAGCTGAATCCATTACACTGCAGGAAATTTTCCCCATCTCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGTAGCTGAATCCATTACACTGCAGGAAATTTTCCCCATCTCAG  492

seq1  AAGTCAAAGTTTCCAAGAGGAAAACCAAATTGGCTTTCATGTAATATTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAAGTTTCCAAGAGGAAAACCAAATTGGCTTTCATGTAATATTCT  542

seq1  CAGTTCATTTATGCCAAGGAAAGTACTATGTGATGTTTTCTGAGTGTAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATTTATGCCAAGGAAAGTACTATGTGATGTTTTCTGAGTGTAGC  592

seq1  TCAGAGGCAAATGACTCCTTCACTTTAAATAACGGGAAATATCTGGGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGCAAATGACTCCTTCACTTTAAATAACGGGAAATATCTGGGAAC  642

seq1  TAGTTCTTATCTGTGAATAGTTCACAGAACTACATTTTGTCTAGTAGCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTATCTGTGAATAGTTCACAGAACTACATTTTGTCTAGTAGCTC  692

seq1  CAGTTTCAGGGTAAGTGACAGTTCTCCAATAGAGAAAATCCTTTGCTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCAGGGTAAGTGACAGTTCTCCAATAGAGAAAATCCTTTGCTGCT  742

seq1  GGTCTGAATTTGGTCTTGACGAAGGCTGTAGTTTGCTCATTGATTTAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAATTTGGTCTTGACGAAGGCTGTAGTTTGCTCATTGATTTAATT  792

seq1  ACGTGATACTCATCCCGTTTTACTTTAATTTGTCTTTATAGGATTCAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGATACTCATCCCGTTTTACTTTAATTTGTCTTTATAGGATTCAGAA  842

seq1  AATGCGTTTTAACAAGGAGATGATTCAGATAAGGATGACTGATTGACTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGTTTTAACAAGGAGATGATTCAGATAAGGATGACTGATTGACTCC  892

seq1  TATCACTGACAGTTGATCTAGTTATTAACCTGGCAGGCTGACAGAACCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTGACAGTTGATCTAGTTATTAACCTGGCAGGCTGACAGAACCCC  942

seq1  ACTTTGCAAGAGCACTCTCATCAGGTGGCAGAAATACAGACACTGTGCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCAAGAGCACTCTCATCAGGTGGCAGAAATACAGACACTGTGCCA  992

seq1  TAGACCCATTCCCCTATAGAAACAACTTCACCTTCACAGTGAACGGTAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCATTCCCCTATAGAAACAACTTCACCTTCACAGTGAACGGTAAA  1042

seq1  CATGGAATTC  1059
      ||||||||||
seq2  CATGGAATTC  1052


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