BAC Information

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BAC

Clone NameB6Ng01-334A21
Chromosome15 (Build37)
Map Location 41,670,494 - 41,837,601
singlet/doubletdoublet
Overlap geneOxr1, Abra, EG432946
Upstream geneZfpm2
Downstream geneLOC432947, LOC100039268, LOC100039197, Angpt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334A21.bB6Ng01-334A21.g
ACCGA119655GA119656
length1,2111,205
definitionB6Ng01-334A21.b B6Ng01-334A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,836,404 - 41,837,601)(41,670,494 - 41,671,673)
sequence
gaattcacaacagaggaatcttgaatgtctgagaagcacctaaagaaatg
ttcaacgtccttagtgatcagagaaatgcaaatcaaaatgaccctgaaat
tctaccttacaccaatcagaatggctaagatcaaaaccttaggtgacagc
acatgttgggaaggatgtggagaaagaggaacacttctccattgttggtg
ggattacaaactggtagaaccactctggaaatcaatctggaggttcctcg
gaaaattggaaatatatctatctgaagacccagaaataccactcttgaga
atataaacaaaagatgcccctccatgccacaggggcatatgttccactat
attcatagcagccttatttgtgatagcagaagctggaaacaacctagatg
tcccacgacagaagaatggatgcacattgaggttttttaaagagtgtgtt
ccaagtaaagttgggctttgataattgttgaattttttgtttccaaaagc
acatcagaataccacagcattgaaaagaagggccattgattccaggggat
gctccacattcccaatctaagttgttctactcaccttttgagtctataaa
ttgccagtgattttctagtaaatcaagtccctcttccttagacttatatt
aaccagagtccccacagtacttgccagtgagagtcccaactagttaacaa
aatgcttttaatagtagggtgtacacttgactaattttaaaaaattggca
agtagagtgataagttctgagaatttttcacatttatagttaagaaaact
tgttattttaataagctaccattggttatattttgagacccacatcacat
gattacctagagtttcaagttgcctaatgagaaatgataacatgatgtat
atgtcagcaagtttcagtttacatgaaatattacaagagatgagtgtctg
atttattccagctgaggccagcaaagaatagagttataaatatttgttaa
gagagttccagtcacctaacatcaccaatgactgaactgtttactaaatg
tcattggggaagactaaagtagctacatagaaaagaaccaagctagaact
aaaacagaagcataattaaaaggtatttaaagtcttaaaggcaaggtcgg
acaccttggaaaggcttacttagaaagagaatattgcccaaaaattcaat
gacactaaatc

gaattcccagatgactttgttgttcagcacccccttcccagttatgggct
gctaacgtctgtatccatccttctttgtccacaaatcacacttttacctt
ttattgagacagtgcttaaatactgatacatttgagattttaggtaattt
tttattgcacgtatctcacataacccttggggatcattctccttcttttt
gacatttgctgtatgaatttcttctctgaagatttgttgatggttaacac
tctcaacttgtgtctctgaaaatagaagagtactgaaagttgaaaactgt
gctaaacatgtgcagatttgtttcttgttattctgaaacgaaacagtgta
acaaccagctattatctagcattctcattgtgttggatattgaagtacat
catgaattacttcatcatgaatggcctatggtgtatgggaatgtacaaaa
cttgaatacctgggagtttgggactctacattaacccagttcctcatgga
gagctggggaacaactgtctttgcttggttgatttggggggttttcttcc
tcttttttcttgtaacttttatctagtttttcttggataaacaattttag
attggtcatttgttttctgccatgttgtgatcttttgtttgataattatt
tatttggggtttgtgcttgcttacatcatgatcttcaggacctgagtgaa
gaggctcagaggatttgcatctgcccttggaaagtttgcctccactctga
gatctgtgaattttctcacttgatacttaatgaaacaacaacaacaaaat
aaaaccttctcttttaagtattatgaagttttagtaggtatattgtgtgt
gtctcttgtttagggaatagaatgcttaaatctgtagatctatctttaat
cagttctggaaattctcagcattaccttttcaagggttttctttttagcc
agaacttaaattgaaattaatagtatttcattagttctagtttcctggtg
ctaagctctttctgattctcagccctttgtttcttagtaatgcatcatgg
gtagattgtaaggccacgtttttcctagttttattaagaatacctcaggg
aagtatcctgcttttttggacataaaccttgattatttccaaggttacat
gaattatataaacctctatgtgggttaattttcaatatggccttaaaatc
atctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_41836404_41837601
seq2: B6Ng01-334A21.b_49_1259 (reverse)

seq1  GATTTA-TGTCATTGAATTTTT-GGCATTATCTTCT-----AGTA--GCT  41
      |||||| ||||||||||||||| |||| |||  |||     ||||   ||
seq2  GATTTAGTGTCATTGAATTTTTGGGCAATATTCTCTTTCTAAGTAAGCCT  50

seq1  TTC--AAGTGTCTGACCTTGCCTTTAAGACTTT-AATACCTTTTAAATAT  88
      |||  | ||||| |||||||||||||||||||| |||||||||||| |||
seq2  TTCCAAGGTGTCCGACCTTGCCTTTAAGACTTTAAATACCTTTTAATTAT  100

seq1  GCCTTCTG-TTTAG-TCTAGCTTGGTTCTTTTCTATGTAGCTACTTTAGT  136
      | |||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  G-CTTCTGTTTTAGTTCTAGCTTGGTTCTTTTCTATGTAGCTACTTTAGT  149

seq1  C-TCCCCAATGACATTTAGTAAACAGTTCAGTCATTGGTGATGTTAGGTG  185
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAATGACATTTAGTAAACAGTTCAGTCATTGGTGATGTTAGGTG  199

seq1  ACTGGAACTCTCTTAACAAATATTTATAACTCTATTCTTTGCTGGCCTCA  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAACTCTCTTAACAAATATTTATAACTCTATTCTTTGCTGGCCTCA  249

seq1  GCTGGAATAAATCAGACACTCATCTCTTGTAATATTTCATGTAAACCTGA  285
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTGGAATAAATCAGACACTCATCTCTTGTAATATTTCATGTAAA-CTGA  298

seq1  AACTTGCTGACATATACATCATGTTATCATTTCTCATTAGGCAACTTGAA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTGACATATACATCATGTTATCATTTCTCATTAGGCAACTTGAA  348

seq1  ACTCTAGGTAATCATGTGATGTGGGTCTCAAAATATAACCAATGGTAGCT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGGTAATCATGTGATGTGGGTCTCAAAATATAACCAATGGTAGCT  398

seq1  TATTAAAATAACAAGTTTTCTTAACTATAAATGTGAAAAATTCTCAGAAC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAATAACAAGTTTTCTTAACTATAAATGTGAAAAATTCTCAGAAC  448

seq1  TTATCACTCTACTTGCCAATTTTTTAAAATTAGTCAAGTGTACACCCTAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTCTACTTGCCAATTTTTTAAAATTAGTCAAGTGTACACCCTAC  498

seq1  TATTAAAAGCATTTTGTTAACTAGTTGGGACTCTCACTGGCAAGTACTGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAGCATTTTGTTAACTAGTTGGGACTCTCACTGGCAAGTACTGT  548

seq1  GGGGACTCTGGTTAATATAAGTCTAAGGAAGAGGGACTTGATTTACTAGA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTCTGGTTAATATAAGTCTAAGGAAGAGGGACTTGATTTACTAGA  598

seq1  AAATCACTGGCAATTTATAGACTCAAAAGGTGAGTAGAACAACTTAGATT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTGGCAATTTATAGACTCAAAAGGTGAGTAGAACAACTTAGATT  648

seq1  GGGAATGTGGAGCATCCCCTGGAATCAATGGCCCTTCTTTTCAATGCTGT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTGGAGCATCCCCTGGAATCAATGGCCCTTCTTTTCAATGCTGT  698

seq1  GGTATTCTGATGTGCTTTTGGAAACAAAAAATTCAACAATTATCAAAGCC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCTGATGTGCTTTTGGAAACAAAAAATTCAACAATTATCAAAGCC  748

seq1  CAACTTTACTTGGAACACACTCTTTAAAAAACCTCAATGTGCATCCATTC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTACTTGGAACACACTCTTTAAAAAACCTCAATGTGCATCCATTC  798

seq1  TTCTGTCGTGGGACATCTAGGTTGTTTCCAGCTTCTGCTATCACAAATAA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCGTGGGACATCTAGGTTGTTTCCAGCTTCTGCTATCACAAATAA  848

seq1  GGCTGCTATGAATATAGTGGAACATATGCCCCTGTGGCATGGAGGGGCAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTATGAATATAGTGGAACATATGCCCCTGTGGCATGGAGGGGCAT  898

seq1  CTTTTGTTTATATTCTCAAGAGTGGTATTTCTGGGTCTTCAGATAGATAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTATATTCTCAAGAGTGGTATTTCTGGGTCTTCAGATAGATAT  948

seq1  ATTTCCAATTTTCCGAGGAACCTCCAGATTGATTTCCAGAGTGGTTCTAC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAATTTTCCGAGGAACCTCCAGATTGATTTCCAGAGTGGTTCTAC  998

seq1  CAGTTTGTAATCCCACCAACAATGGAGAAGTGTTCCTCTTTCTCCACATC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTAATCCCACCAACAATGGAGAAGTGTTCCTCTTTCTCCACATC  1048

seq1  CTTCCCAACATGTGCTGTCACCTAAGGTTTTGATCTTAGCCATTCTGATT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAACATGTGCTGTCACCTAAGGTTTTGATCTTAGCCATTCTGATT  1098

seq1  GGTGTAAGGTAGAATTTCAGGGTCATTTTGATTTGCATTTCTCTGATCAC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAGGTAGAATTTCAGGGTCATTTTGATTTGCATTTCTCTGATCAC  1148

seq1  TAAGGACGTTGAACATTTCTTTAGGTGCTTCTCAGACATTCAAGATTCCT  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACGTTGAACATTTCTTTAGGTGCTTCTCAGACATTCAAGATTCCT  1198

seq1  CTGTTGTGAATTC  1198
      |||||||||||||
seq2  CTGTTGTGAATTC  1211


seq1: chr15_41670494_41671673
seq2: B6Ng01-334A21.g_67_1271

seq1  GAATTCCCAGATGACTTTGTTGTTCAGCACCCCCTTCCCAGTTATGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGATGACTTTGTTGTTCAGCACCCCCTTCCCAGTTATGGGCT  50

seq1  GCTAACGTCTGTATCCATCCTTCTTTGTCCACAAATCACACTTTTACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACGTCTGTATCCATCCTTCTTTGTCCACAAATCACACTTTTACCTT  100

seq1  TTATTGAGACAGTGCTTAAATACTGATACATTTGAGATTTTAGGTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGACAGTGCTTAAATACTGATACATTTGAGATTTTAGGTAATTT  150

seq1  TTTATTGCACGTATCTCACATAACCCTTGGGGATCATTCTCCTTCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCACGTATCTCACATAACCCTTGGGGATCATTCTCCTTCTTTTT  200

seq1  GACATTTGCTGTATGAATTTCTTCTCTGAAGATTTGTTGATGGTTAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTGCTGTATGAATTTCTTCTCTGAAGATTTGTTGATGGTTAACAC  250

seq1  TCTCAACTTGTGTCTCTGAAAATAGAAGAGTACTGAAAGTTGAAAACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACTTGTGTCTCTGAAAATAGAAGAGTACTGAAAGTTGAAAACTGT  300

seq1  GCTAAACATGTGCAGATTTGTTTCTTGTTATTCTGAAACGAAACAGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACATGTGCAGATTTGTTTCTTGTTATTCTGAAACGAAACAGTGTA  350

seq1  ACAACCAGCTATTATCTAGCATTCTCATTGTGTTGGATATTGAAGTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGCTATTATCTAGCATTCTCATTGTGTTGGATATTGAAGTACAT  400

seq1  CATGAATTACTTCATCATGAATGGCCTATGGTGTATGGGAATGTACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTACTTCATCATGAATGGCCTATGGTGTATGGGAATGTACAAAA  450

seq1  CTTGAATACCTGGGAGTTTGGGACTCTACATTAACCCAGTTCCTCATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATACCTGGGAGTTTGGGACTCTACATTAACCCAGTTCCTCATGGA  500

seq1  GAGCTGGGGAACAACTGTCTTTGCTTGGTTGATTTGGGGGGTTTTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGGGAACAACTGTCTTTGCTTGGTTGATTTGGGGGGTTTTCTTCC  550

seq1  TCTTTTTTCTTGTAACTTTTATCTAGTTTTTCTTGGATAAACAATTTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCTTGTAACTTTTATCTAGTTTTTCTTGGATAAACAATTTTAG  600

seq1  ATTGGTCATTTGTTTTCTGCCATGTTGTGATCTTTTGTTTGATAATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCATTTGTTTTCTGCCATGTTGTGATCTTTTGTTTGATAATTATT  650

seq1  TATTTGGGGTTTGTGCTTGCTTACATCATGATCTTCAGGACCTGAGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGGGTTTGTGCTTGCTTACATCATGATCTTCAGGACCTGAGTGAA  700

seq1  GAGGCTCAGAGGATTTGCATCTGCCCTTGGAAAGTTTGCCTCCACTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCAGAGGATTTGCATCTGCCCTTGGAAAGTTTGCCTCCACTCTGA  750

seq1  GATCTGTGAATTTTCTCACTTGATACTTAATGAAACAACAACAACAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTGAATTTTCTCACTTGATACTTAATGAAACAACAACAACAAAAT  800

seq1  AAAACCTTCTCTTTTAAGTATTATGAAGTTTTAGTAGGTATATTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTCTCTTTTAAGTATTATGAAGTTTTAGTAGGTATATTGTGTGT  850

seq1  GTCTCTTGTTTAGGGAATAGAATGCTTAAATCTGTAGATCTATCTTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGTTTAGGGAATAGAATGCTTAAATCTGTAGATCTATCTTTAAT  900

seq1  CAGTTCTGGAAATTCTCAGCATTACCTTTTCAAGGGTTTTCTTTTTAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGGAAATTCTCAGCATTACCTTTTCAAGGGTTTTCTTTTTAGCC  950

seq1  AGAACTT-AATTGAAATTAATAGTATTTCATTAG-TCTAG-TTCCT-GTG  996
      ||||||| |||||||||||||||||||||||||| ||||| ||||| |||
seq2  AGAACTTAAATTGAAATTAATAGTATTTCATTAGTTCTAGTTTCCTGGTG  1000

seq1  CTAAGCTC-TTCTGATTCTCAG-CCTTTG-TTCTTAGTAATGCATCATGG  1043
      |||||||| ||||||||||||| |||||| ||||||||||||||||||||
seq2  CTAAGCTCTTTCTGATTCTCAGCCCTTTGTTTCTTAGTAATGCATCATGG  1050

seq1  GTAG-TTGTA--GGCACG--TTTCCTAGTTTTATTAAG-ATA-CTCAGG-  1085
      |||| |||||  | ||||  |||||||||||||||||| ||| |||||| 
seq2  GTAGATTGTAAGGCCACGTTTTTCCTAGTTTTATTAAGAATACCTCAGGG  1100

seq1  -AGTAT-CTGCTTTTTT-GACATAA---CTGATTATTT-CAAAGTTACAT  1128
       ||||| |||||||||| |||||||    ||||||||| ||| |||||||
seq2  AAGTATCCTGCTTTTTTGGACATAAACCTTGATTATTTCCAAGGTTACAT  1150

seq1  GTATTATATAAAACTCCTAT-TTGGTTAATTTCCCAATATG--CTT--AA  1173
      | |||||||||| || |||| | |||||||||  |||||||  |||  ||
seq2  GAATTATATAAACCT-CTATGTGGGTTAATTT-TCAATATGGCCTTAAAA  1198

seq1  TCATCTC  1180
      |||||||
seq2  TCATCTC  1205


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