BAC Information

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BAC

Clone NameB6Ng01-335A24
Chromosome15 (Build37)
Map Location 22,092,737 - 22,093,912
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335A24.bB6Ng01-335A24.g
ACCGA120405GA120406
length1,1551,167
definitionB6Ng01-335A24.b B6Ng01-335A24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagctccttgagtgtcgtgcctgcctggtcactgctatgcttt
cttcatataataatggactgaacctctatacctgtaagccagcctcagtt
aaatgttgtcctttataagaactgccttggttatggtgtgtcttcagtgc
agtggaaatctaactaagatactaatcattatgttgcttagaactcaccc
aacttacttagtttttttaagctgctgtaacagaatgtgattaccttatt
ataaatgagaatttatttctcataggtcaagactggggatataagtttgt
tcagtggtggtagagaatctaagtctctgtctacacattatgtttcacat
gcacagtttcctagttgcagaataagaagacctctgcaatttttttttat
aaaatcaaagttcagtttatgtgttttcacatgaattgcatttgtaagtt
tcattcttttctgatctaatcatttaaataaaactcagcccaatgccatc
atatcctgacaaggaaggcaatattagtttcttagtaggatccacaatga
tcaggtagagcataggcttgacaggtagaacttggaaaaatgtttcctag
aagacaatatgcctggttcttatttatatacgtaacagactattgtacaa
tccttgatacaggtttcattatcaaacctcaatatttatttattttttct
cccatgctcatggattggcaggatcaatatagtaaaaatggctatcctgc
caaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaa
ctcttcacagagttagaaagggcaattttcaaattcatctggaataccaa
aaaaaaacccaaacaaaccaaacaaacaacaaacaaacaaaaaaaaaccc
tatgatagcaaaaactattctcaacaataaaaaaagaacctctggggaaa
tcaccatgcctgacctcaagctgtactacagagcaattgtggtaaaaaac
tgcatggtactgggtatagcacagacaggtagatcatggaatagaattga
agacccagaatgacccacacatctatagtcactgatcttgacaaggagct
aacaatcagtggaaaaagacagcattcacagttgctgctcactgcagtat
catgt
gaattctcacctgaggaatactgaatggcggagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaat
agatgctggtgtggatttggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcgcttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctaggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagaagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagacataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacaaagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaatgctgacaccattgcatatactagcaagattttatcgaaa
ggatccagatgtagctgtctcttgtgagactatgctggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggaggtagagaaagtacccagtagctataggatctgcacctatag
gtcgacacattatgactaaccagtacccgagctctgactctagctgtata
tgtatcaaagatgcctagtcgtcatcactgtaaagagagtcaatgacatg
caacttgtatgccagtcaggaacgtcaggtcaaaagggaggcgtgctaag
ggaagatgtcggtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22092737_22093912
seq2: B6Ng01-335A24.b_48_1202

seq1  GAATTCTCAGCTCCTTGAGTGTCGTGCCTGCCTGGTCACTGCTATGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCCTTGAGTGTCGTGCCTGCCTGGTCACTGCTATGCTTT  50

seq1  CTTCATATAATAATGGACTGAACCTCTATACCTGTAAGCCAGCCTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATATAATAATGGACTGAACCTCTATACCTGTAAGCCAGCCTCAGTT  100

seq1  AAATGTTGTCCTTTATAAGAACTGCCTTGGTTATGGTGTGTCTTCAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTCCTTTATAAGAACTGCCTTGGTTATGGTGTGTCTTCAGTGC  150

seq1  AGTGGAAATCTAACTAAGATACTAATCATTATGTTGCTTAGAACTCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAATCTAACTAAGATACTAATCATTATGTTGCTTAGAACTCACCC  200

seq1  AACTTACTTAGTTTTTTTAAGCTGCTGTAACAGAATGTGATTACCTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACTTAGTTTTTTTAAGCTGCTGTAACAGAATGTGATTACCTTATT  250

seq1  ATAAATGAGAATTTATTTCTCATAGGTCAAGACTGGGGATATAAGTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAGAATTTATTTCTCATAGGTCAAGACTGGGGATATAAGTTTGT  300

seq1  TCAGTGGTGGTAGAGAATCTAAGTCTCTGTCTACACATTATGTTTCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTGGTAGAGAATCTAAGTCTCTGTCTACACATTATGTTTCACAT  350

seq1  GCACAGTTTCCTAGTTGCAGAATAAGAAGACCTCTGCAATTTTTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTTTCCTAGTTGCAGAATAAGAAGACCTCTGCAATTTTTTTTTAT  400

seq1  AAAATCAAAGTTCAGTTTATGTGTTTTCACATGAATTGCATTTGTAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAAGTTCAGTTTATGTGTTTTCACATGAATTGCATTTGTAAGTT  450

seq1  TCATTCTTTTCTGATCTAATCATTTAAATAAAACTCAGCCCAATGCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTTCTGATCTAATCATTTAAATAAAACTCAGCCCAATGCCATC  500

seq1  ATATCCTGACAAGGAAGGCAATATTAGTTTCTTAGTAGGATCCACAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTGACAAGGAAGGCAATATTAGTTTCTTAGTAGGATCCACAATGA  550

seq1  TCAGGTAGAGCATAGGCTTGACAGGTAGAACTTGGAAAAATGTTTCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAGAGCATAGGCTTGACAGGTAGAACTTGGAAAAATGTTTCCTAG  600

seq1  AAGACAATATGCCTGGTTCTTATTTATATACGTAACAGACTATTGTACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATATGCCTGGTTCTTATTTATATACGTAACAGACTATTGTACAA  650

seq1  TCCTTGATACAGGTTTCATTATCAAACCTCAATATTTATTTATTTTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATACAGGTTTCATTATCAAACCTCAATATTTATTTATTTTTTCT  700

seq1  CCCATGCTCATGGATTGGCAGGATCAATATAGTAAAAATGGCTATCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCTCATGGATTGGCAGGATCAATATAGTAAAAATGGCTATCCTGC  750

seq1  CAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAA  800

seq1  CTCTTCACAGAGTTAGAAAGGGCAATTTTCAAATTCATCTGGAATACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACAGAGTTAGAAAGGGCAATTTTCAAATTCATCTGGAATACCAA  850

seq1  AAAAAAACCCAAACAAACCAAACAAACAAACAAACAAACAAAAAAAAACC  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAAAAACCCAAACAAACCAAACAAAC-AACAAACAAACAAAAAAAAACC  899

seq1  CTATGATAGCAAAAACTATTCTCAACAATAAAAAAAGAACCTCTGGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATAGCAAAAACTATTCTCAACAATAAAAAAAGAACCTCTGGGGAA  949

seq1  ATCACCATGCCTGACCTCAAGCTGTACTACAGAGCAATTGTGGTAAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCATGCCTGACCTCAAGCTGTACTACAGAGCAATTGTGGTAAAAAA  999

seq1  CTGCATGGTACT-GGTATAGCAACAGACAGGTAGATCAATGGAATAGAAT  1049
      |||||||||||| |||||||| ||||||||||||||| ||||||||||||
seq2  CTGCATGGTACTGGGTATAGC-ACAGACAGGTAGATC-ATGGAATAGAAT  1047

seq1  TGAAGACACAGAAATGAACCCACACATCTATAGTCACTTGATCTTTGACA  1099
      ||||||| ||| |||| |||||||||||||||||||| ||||| ||||| 
seq2  TGAAGACCCAG-AATG-ACCCACACATCTATAGTCAC-TGATC-TTGAC-  1092

seq1  AAGAAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGT  1149
      ||| ||||||   ||  |||||| ||||||||||||||  ||      ||
seq2  AAGGAGCTAA---CAATCAGTGG-AAAAAGACAGCATTCACA------GT  1132

seq1  TGCTGGCTCAACTGGCAGTAATCATGT  1176
      |||| |||| ||| ||||| |||||||
seq2  TGCT-GCTC-ACT-GCAGT-ATCATGT  1155