BAC Information

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BAC

Clone NameB6Ng01-335F05
Chromosome15 (Build37)
Map Location 17,227,107 - 17,317,939
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335F05.bB6Ng01-335F05.g
ACCGA120592GA120593
length9931,157
definitionB6Ng01-335F05.b B6Ng01-335F05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,227,107 - 17,228,108)(17,316,752 - 17,317,939)
sequence
gaattccataacaagataccatatattgtatgaccaacaaggagtatttt
ttttcctctttcccattctaggtgcaaatatatttcgtttctagagacaa
gattcctcttcttgtgttctgttctattatgttaatattgctaatagttt
actattacttcacacaaccttgccttagtatgctcagagagagaaagata
gtgaaacatataagggtagataaagacagatggatggatagaaggagaga
tagaatgagagaaggattcttctcttatagctcattctctgtaatttttc
aatgttaaagtaggaatgttgggattcagagagaactttcagtgcctaag
atctacctgccctaacagaggtgtgggtgtcagttctcagcatctatatt
tgctgttttaccaccagctgcaattcaagttctaagctattagaagctgt
cttctggctttatcaaatacccatactccagggctcatattcacacagcc
acttaagaataaatctaaatctataaaactaataagcattttggtaactg
tatatctatacgtgtacatgagatgatttgtagattgtctcttctcgggc
ttatgtaaagaatgagttcatctcagaaagaaaaaaatgatacctatgtc
tcaattgtgatacctacctgaaaatatagacattatatgttagatttgat
gttaaaataaacatagagttttagcgttactggaacagaaaaacttgttt
tagtatatgaaaacaacacatcttttttttttttttttttttgtgttagt
accaggaaacgttgaatgtgttttgttcattatttgttttttttaatata
atgccctggagttttgtgggagaaagactgatgataattcaaaaatttca
gtttaggttaaatgagttcaatatgtagaaagatatgacagaaatacctg
tacgataagtgttgaaatttactgtaatctaaagtgtagctgt

gaattcttcataacttgttaaccattaagtacctgtatattacagtagag
gtgacttatacatagtgacttctatctatttaaaaataaagttatagaag
gatgtctatacccaaaccaaacatataatttacttttattaaagtaattt
tgatataaattattaacttgaatgcgattgcttctgttgaaacctcacta
ataaaacattttctttcataacttaaatttataatttcaaaattttgtga
aaaatatttttccagacactgatgttctctagtaaacaaagagcatgcac
tttctttcattgctcataaaattaaattcagaatatttgtatctatagct
aaacacactatattctaaatgttctgtcagctatgagatagtttgatgat
tttgagtgaaataaaatatgacattgtctacagataaactaataaggaaa
gttggaggataatacacaaagaagaggaggacaccacaagtggatacatt
tacttcgttagaaatgatttgattctggggctataaattatagtatcagc
aaattttaaaaggatcagaagtctaggcagcattagagagaattacttaa
actactgtgttggtgagtcttgatctatcacagtggtagactgcttgcct
cacaggagcaaggctctagtttctatccttagcaaaatatatgaaattta
tattttcttactcggtttatcaaatatttaaatacatttgatcaataatt
aaaatacttttcttcaatttaaattaatataaataggatatatagtgaca
gatgagaaatactaaaaactataagcttgagaacttctttcttcattaca
gtaatttaatttattgaagtacacttaaaagggatatgcctaagattctt
gtaaataaagttaaggcaaccaaatgtgtttcatagcttccatatcatga
tgcatttcatatatataactaaatcaatacagctgaaagtaggtattttg
tatatagatttaatatctacatgtgtttgaattaggagtatgatattcaa
tcatgagcttagaattaaacacctttgttgggaatttgcctatggtctgt
ctgttggtcctggatccatgggtcatggcaatctgggattcaatggcaac
tccagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17227107_17228108
seq2: B6Ng01-335F05.b_48_1040

seq1  GAATTCCATAACAAGATACCATATATTGTATGACCAACAAGGAGTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAACAAGATACCATATATTGTATGACCAACAAGGAGTATTTT  50

seq1  TTTTCCTCTTTCCCATTCTAGGTGCAAATATATTTCGTTTCTAGAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTTTCCCATTCTAGGTGCAAATATATTTCGTTTCTAGAGACAA  100

seq1  GATTCCTCTTCTTGTGTTCTGTTCTATTATGTTAATATTGCTAATAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCTTCTTGTGTTCTGTTCTATTATGTTAATATTGCTAATAGTTT  150

seq1  ACTATTACTTCACACAACCTTGCCTTAGTATGCTCAGAGAGAGAAAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTACTTCACACAACCTTGCCTTAGTATGCTCAGAGAGAGAAAGATA  200

seq1  GTGAAACATATAAGGGTAGATAAAGACAGATGGATGGATAGAAGGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACATATAAGGGTAGATAAAGACAGATGGATGGATAGAAGGAGAGA  250

seq1  TAGAATGAGAGAAGGATTCTTCTCTTATAGCTCATTCTCTGTAATTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAGAGAAGGATTCTTCTCTTATAGCTCATTCTCTGTAATTTTTC  300

seq1  AATGTTAAAGTAGGAATGTTGGGATTCAGAGAGAACTTTCAGTGCCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAAGTAGGAATGTTGGGATTCAGAGAGAACTTTCAGTGCCTAAG  350

seq1  ATCTACCTGCCCTAACAGAGGTGTGGGTGTCAGTTCTCAGCATCTATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTGCCCTAACAGAGGTGTGGGTGTCAGTTCTCAGCATCTATATT  400

seq1  TGCTGTTTTACCACCAGCTGCAATTCAAGTTCTAAGCTATTAGAAGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTTACCACCAGCTGCAATTCAAGTTCTAAGCTATTAGAAGCTGT  450

seq1  CTTCTGGCTTTATCAAATACCCATACTCCAGGGCTCATATTCACACAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTTTATCAAATACCCATACTCCAGGGCTCATATTCACACAGCC  500

seq1  ACTTAAGAATAAATCTAAATCTATAAAACTAATAAGCATTTTGGTAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGAATAAATCTAAATCTATAAAACTAATAAGCATTTTGGTAACTG  550

seq1  TATATCTATACGTGTACATGAGATGATTTGTAGATTGTCTCTTCTCGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTATACGTGTACATGAGATGATTTGTAGATTGTCTCTTCTCGGGC  600

seq1  TTATGTAAAGAATGAGTTCATCTCAGAAAGAAAAAAATGATACCTATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAAAGAATGAGTTCATCTCAGAAAGAAAAAAATGATACCTATGTC  650

seq1  TCAATTGTGATACCTACCTGAAAATATAGACATTATATGTTAGATTTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGTGATACCTACCTGAAAATATAGACATTATATGTTAGATTTGAT  700

seq1  GTTAAAATAAACATAGAGTTTTAGCGTTACTGGAACAGAAAAACTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATAAACATAGAGTTTTAGCGTTACTGGAACAGAAAAACTTGTTT  750

seq1  TAGTATATGAAAACAACACATCTTTTTTTTTTTTTTTTTTTTTTTTGTGT  800
      ||||||||||||||||||||||    ||||||||||||||||||||||||
seq2  TAGTATATGAAAACAACACATC----TTTTTTTTTTTTTTTTTTTTGTGT  796

seq1  TAGTACCAGGAAACGTTGAATGTGTTTTGTTCATTATTTTGTTTTTTTAA  850
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  TAGTACCAGGAAACGTTGAATGTGTTTTGTTCATTATTTGTTTTTTTTAA  846

seq1  TATAATGCCCTGGAGTTTTGTGGGAGAAAGACTGATGAT-ATTCAAAAAT  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATAATGCCCTGGAGTTTTGTGGGAGAAAGACTGATGATAATTCAAAAAT  896

seq1  TTCAGTTTAGGTTAAATGAGTTCAATATGGTAGAAAGATATGACAGAAAA  949
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  TTCAGTTTAGGTTAAATGAGTTCAATAT-GTAGAAAGATATGACAG-AAA  944

seq1  TACCTTGTACGATAAGGTGTTGAAAATTACATGTAAATCTAAAGTGTAGC  999
      |||| |||||||||| ||||||||| |||| ||| |||||||||||||||
seq2  TACC-TGTACGATAA-GTGTTGAAATTTAC-TGT-AATCTAAAGTGTAGC  990

seq1  TGT  1002
      |||
seq2  TGT  993


seq1: chr15_17316752_17317939
seq2: B6Ng01-335F05.g_66_1222 (reverse)

seq1  AACTGGAGTAGCCATTAGAAAATCCCAGA-TGCCAGGGACCCATGAGATT  49
      ||||||||| ||||||    ||||||||| |||||  |||||||| ||| 
seq2  AACTGGAGTTGCCATT---GAATCCCAGATTGCCA-TGACCCATG-GAT-  44

seq1  CCCAGGACCCAACAGACAGGACATTAGCCAAAATACCCAACAAAAGTGTT  99
       |||||| |||||||||||  |||  ||  |||| ||||||||| |||  
seq2  -CCAGGA-CCAACAGACAGACCATAGGC--AAATTCCCAACAAAGGTG--  88

seq1  TTTAATATCTAAAGCTCATGATTGAATATCATTACTCTTAAATTCAAACA  149
      |||||| ||| |||||||||||||||||||| ||||| | ||||||||||
seq2  TTTAAT-TCT-AAGCTCATGATTGAATATCA-TACTCCT-AATTCAAACA  134

seq1  CATTGTTAAGATAATTTAAATCTAATATTACAAAATACCTACTTTCAGCT  199
      || |||  |||||  |||||||| ||| ||||||||||||||||||||||
seq2  CA-TGT--AGATA--TTAAATCT-ATA-TACAAAATACCTACTTTCAGCT  177

seq1  GTATTGATTTTAAGTTATTATATTATGAAATGCAATCAATGATATGGAAA  249
      ||||||||||  ||||| |||| |||||||||| ||| ||||||||| ||
seq2  GTATTGATTT--AGTTA-TATA-TATGAAATGC-ATC-ATGATATGG-AA  220

seq1  GCTATGAAAACACATTTGGTTGCCTTAACTTTATTTTACAAGAATCTTAG  299
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTATG-AAACACATTTGGTTGCCTTAACTTTA-TTTACAAGAATCTTAG  268

seq1  GCATATCCCTTTTAAGTGTACTTCAATAAATTAAATTACTGTAATGAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCCCTTTTAAGTGTACTTCAATAAATTAAATTACTGTAATGAAGA  318

seq1  AAGAAGTTCTCAAGCTTATAGTTTTTAGTATTTCTCATCTGTCACTATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTCTCAAGCTTATAGTTTTTAGTATTTCTCATCTGTCACTATAT  368

seq1  ATCCTATTTATATTAATTTAAATTGAAGAAAAGTATTTTAATTATTGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATTTATATTAATTTAAATTGAAGAAAAGTATTTTAATTATTGATC  418

seq1  AAATGTATTTAAATATTTGATAAACCGAGTAAGAAAATATAAATTTCATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTTAAATATTTGATAAACCGAGTAAGAAAATATAAATTTCATA  468

seq1  TATTTTGCTAAGGATAGAAACTAGAGCCTTGCTCCTGTGAGGCAAGCAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCTAAGGATAGAAACTAGAGCCTTGCTCCTGTGAGGCAAGCAGT  518

seq1  CTACCACTGTGATAGATCAAGACTCACCAACACAGTAGTTTAAGTAATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTGTGATAGATCAAGACTCACCAACACAGTAGTTTAAGTAATTC  568

seq1  TCTCTAATGCTGCCTAGACTTCTGATCCTTTTAAAATTTGCTGATACTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATGCTGCCTAGACTTCTGATCCTTTTAAAATTTGCTGATACTAT  618

seq1  AATTTATAGCCCCAGAATCAAATCATTTCTAACGAAGTAAATGTATCCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATAGCCCCAGAATCAAATCATTTCTAACGAAGTAAATGTATCCAC  668

seq1  TTGTGGTGTCCTCCTCTTCTTTGTGTATTATCCTCCAACTTTCCTTATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGTCCTCCTCTTCTTTGTGTATTATCCTCCAACTTTCCTTATTA  718

seq1  GTTTATCTGTAGACAATGTCATATTTTATTTCACTCAAAATCATCAAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTGTAGACAATGTCATATTTTATTTCACTCAAAATCATCAAACT  768

seq1  ATCTCATAGCTGACAGAACATTTAGAATATAGTGTGTTTAGCTATAGATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATAGCTGACAGAACATTTAGAATATAGTGTGTTTAGCTATAGATA  818

seq1  CAAATATTCTGAATTTAATTTTATGAGCAATGAAAGAAAGTGCATGCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTCTGAATTTAATTTTATGAGCAATGAAAGAAAGTGCATGCTCT  868

seq1  TTGTTTACTAGAGAACATCAGTGTCTGGAAAAATATTTTTCACAAAATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACTAGAGAACATCAGTGTCTGGAAAAATATTTTTCACAAAATTT  918

seq1  TGAAATTATAAATTTAAGTTATGAAAGAAAATGTTTTATTAGTGAGGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTATAAATTTAAGTTATGAAAGAAAATGTTTTATTAGTGAGGTTT  968

seq1  CAACAGAAGCAATCGCATTCAAGTTAATAATTTATATCAAAATTACTTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAGCAATCGCATTCAAGTTAATAATTTATATCAAAATTACTTTA  1018

seq1  ATAAAAGTAAATTATATGTTTGGTTTGGGTATAGACATCCTTCTATAACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTAAATTATATGTTTGGTTTGGGTATAGACATCCTTCTATAACT  1068

seq1  TTATTTTTAAATAGATAGAAGTCACTATGTATAAGTCACCTCTACTGTAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAAATAGATAGAAGTCACTATGTATAAGTCACCTCTACTGTAA  1118

seq1  TATACAGGTACTTAATGGTTAACAAGTTATGAAGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||
seq2  TATACAGGTACTTAATGGTTAACAAGTTATGAAGAATTC  1157


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