BAC Information

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BAC

Clone NameB6Ng01-335K15
Chromosome12 (Build37)15 (Build37)
Map Location 9,025,570 - 9,026,69963,654,205 - 63,654,538
singlet/doubletsingletsinglet
Overlap geneWdr35
Upstream gene1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3
Downstream geneTtc32, LOC633030, LOC100042238, Osr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335K15.bB6Ng01-335K15.g
ACCGA120817GA120818
length1,132610
definitionB6Ng01-335K15.b B6Ng01-335K15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,025,570 - 9,026,699)(63,654,205 - 63,654,538)
sequence
gaattcactttgtagaccatgttggtctcgaactcagaaatccgcctgcc
tctacctcccacgtgctgggattaaaggggtgctccaccatgcccggcct
tctcagttttgtaatccatctacttggagtctggtgtgactcttctcatg
ccggcctcccagttcccctctctctgccagaactcccaccttctgttccc
tgcctttgctagcaagccaccagtgctttattgaaatgtgatgcacacta
cacaagacatcctctctacagttatgaatgctttattttttgatcatagt
aaattatttcatatttacttgttttgttatagattgttttcagaaagcat
tgctttattcttaagttttcattgggattcatatgcttatcatttatgtc
agtgatacaagtacttatatgatattgtatacgtgagagcgttcaaagaa
tattacaggtagaatatccttcattttctttagatcttaaaaaattgtgt
gttttaaaggtcttgtgttgcgtgtagttttaccctgtacttgcctttcc
tctgggaggtgagctctctcccagccccgcccgcccggcttcccttgagt
cctctgacagaagacacacagtttgatccttctctacttgccttttggca
caattgctgggtgctgccatctccctcctagaaaaatgtgcccttatcaa
tttcatatctccgtctctcccatctgccctaaacttcaatcgctaaactc
ttctgaccaccttcctataggagtggcctttgtggccacttcgttttgag
atctcacatggtttcttggttctcttctctccaaagcatgtgaactgcat
tctcttcccttgagtcccctgcctgctcccaggacctggaagtccctatt
atacccacctagccattgacccatggctttctttactgacagatcaagag
ccattggggaacagggactttagcatcagaccaccccttcagtattgtat
aactcaaaatgatgagtaacacaaataatatcctattgagaggaatattt
tatgagtcttgttttattctagaagacctccactactgaattggtgcagg
tttttccacccataagcagaatgcctgtgcaa
gaattcagagcaaatatgctatgtgaaagaaaccaggcacaaagggtcac
atattacaattccctttgtagaaaatatccagaactagtctgcagaaaca
caatacagatagatgggttgctggtctcaaagaactagagggatttgtac
atatttagtccatattttataaagaatgggtatgcacacacatacacaca
tatgtatatagatacacacacacatatatgtgtatgtctcagttaggatt
ttactgctgtgaacagacaccatgaccaaggcaagtcttataaaaaaaca
acatttaattggggctggcttacaggttcagaggttcagtccattatcat
caaggcgaaagcatggcagcatccaggctgtcatggctcaggcagagctg
agagttctatgtctttatccaaaggctgctagtggaagactgacttccag
gcatctggggtaggagtattaaacccacactcacagtgacacacctactc
caaccaggtcacacctattccaacaaggccacacctccaaatggtgtcac
tccctggtcaaagaatatacaaaccatcacagtgtgtgtgtgtgtgtgtg
tgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_9025570_9026699
seq2: B6Ng01-335K15.b_49_1180

seq1  GAATTCACTTTGTAGACCATGTTGGTCTCGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCATGTTGGTCTCGAACTCAGAAATCCGCCTGCC  50

seq1  TCTACCTCCCACGTGCTGGGATTAAAGGGGTGCTCCACCATGCCCGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCCCACGTGCTGGGATTAAAGGGGTGCTCCACCATGCCCGGCCT  100

seq1  TCTCAGTTTTGTAATCCATCTACTTGGAGTCTGGTGTGACTCTTCTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTTTGTAATCCATCTACTTGGAGTCTGGTGTGACTCTTCTCATG  150

seq1  CCGGCCTCCCAGTTCCCCTCTCTCTGCCAGAACTCCCACCTTCTGTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCTCCCAGTTCCCCTCTCTCTGCCAGAACTCCCACCTTCTGTTCCC  200

seq1  TGCCTTTGCTAGCAAGCCACCAGTGCTTTATTGAAATGTGATGCACACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGCTAGCAAGCCACCAGTGCTTTATTGAAATGTGATGCACACTA  250

seq1  CACAAGACATCCTCTCTACAGTTATGAATGCTTTATTTTTTGATCATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACATCCTCTCTACAGTTATGAATGCTTTATTTTTTGATCATAGT  300

seq1  AAATTATTTCATATTTACTTGTTTTGTTATAGATTGTTTTCAGAAAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTCATATTTACTTGTTTTGTTATAGATTGTTTTCAGAAAGCAT  350

seq1  TGCTTTATTCTTAAGTTTTCATTGGGATTCATATGCTTATCATTTATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATTCTTAAGTTTTCATTGGGATTCATATGCTTATCATTTATGTC  400

seq1  AGTGATACAAGTACTTATATGATATTGTATACGTGAGAGCGTTCAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATACAAGTACTTATATGATATTGTATACGTGAGAGCGTTCAAAGAA  450

seq1  TATTACAGGTAGAATATCCTTCATTTTCTTTAGATCTTAAAAAATTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAGGTAGAATATCCTTCATTTTCTTTAGATCTTAAAAAATTGTGT  500

seq1  GTTTTAAAGGTCTTGTGTTGCGTGTAGTTTTACCCTGTACTTGCCTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAGGTCTTGTGTTGCGTGTAGTTTTACCCTGTACTTGCCTTTCC  550

seq1  TCTGGGAGGTGAGCTCTCTCCCAGCCCCGCCCGCCCGGCTTCCCTTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGGTGAGCTCTCTCCCAGCCCCGCCCGCCCGGCTTCCCTTGAGT  600

seq1  CCTCTGACAGAAGACACACAGTTTGATCCTTCTCTACTTGCCTTTTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACAGAAGACACACAGTTTGATCCTTCTCTACTTGCCTTTTGGCA  650

seq1  CAATTGCTGGGTGCTGCCATCTCCCTCCTAGAAAAATGTGCCCTTATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCTGGGTGCTGCCATCTCCCTCCTAGAAAAATGTGCCCTTATCAA  700

seq1  TTTCATATCTCCGTCTCTCCCATCTGCCCTAAACTTCAATCGCTAAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATCTCCGTCTCTCCCATCTGCCCTAAACTTCAATCGCTAAACTC  750

seq1  TTCTGACCACCTTCCTATAGGAGTGGCCTTTGTGGCCACTTCGTTTTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACCACCTTCCTATAGGAGTGGCCTTTGTGGCCACTTCGTTTTGAG  800

seq1  ATCTCACATGGTTTCTTGGTTCTCTTCTCTCCAAAGCATGTGAACTGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACATGGTTTCTTGGTTCTCTTCTCTCCAAAGCATGTGAACTGCAT  850

seq1  TCTCTTCCCTTGAGTCCCCTGCCTGCTCCCAGGACCTGGAAGTCCCTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCCTTGAGTCCCCTGCCTGCTCCCAGGACCTGGAAGTCCCTATT  900

seq1  ATACCCACCTAGCCATTGACCCATGGCTTTCTTTACTGACAGATCAAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACCTAGCCATTGACCCATGGCTTTCTTTACTGACAGATCAAGAG  950

seq1  CCAATTGGGGAACA-GGACTTTAGCATCAGAACCACCCCCTTCAGTATTG  999
      || ||||||||||| ||||||||||||||| |||| ||||||||||||||
seq2  CC-ATTGGGGAACAGGGACTTTAGCATCAG-ACCA-CCCCTTCAGTATTG  997

seq1  TATAACTCAAAATGATGAAGTAACACAAAT-ATATCCTAATGAGAGGATA  1048
      ||||||||||||||||| |||||||||||| |||||||| ||||||||  
seq2  TATAACTCAAAATGATG-AGTAACACAAATAATATCCTATTGAGAGGAAT  1046

seq1  TTTTTATGGAAGTTCTTGTTT--ATCTAG-AGA-CTCACATACTGA--TT  1092
       |||||||  || ||||||||   ||||| ||| |||   ||||||  | 
seq2  ATTTTATG--AG-TCTTGTTTTATTCTAGAAGACCTCCACTACTGAATTG  1093

seq1  GTGAAGTTTTTTCCACCCATAGGCAGAATG-CTGTGCAA  1130
      ||| || |||||||||||||| |||||||| ||||||||
seq2  GTGCAGGTTTTTCCACCCATAAGCAGAATGCCTGTGCAA  1132

seq1: chr15_63654205_63654538
seq2: B6Ng01-335K15.g_317_652

seq1  TTTTACTGCTGTGAACAAACACCATGACCAAGGCAAGTCTTAT--AAAAA  48
      ||||||||||||||||| |||||||||||||||||||||||||  |||||
seq2  TTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCTTATAAAAAAA  50

seq1  CAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATC  100

seq1  ATCAAGGTGGAAGTATGGCAGTATCCAGGCAGGCATGGCGAAGGAGGAGC  148
      ||||||| | ||| ||||||| |||||||| | ||||||  |||  ||||
seq2  ATCAAGGCGAAAGCATGGCAGCATCCAGGCTGTCATGGCTCAGGCAGAGC  150

seq1  TGAGAGTTCTATGTCTTCATCCAAAGGTGGCTAGTGGAAGACTGACTTCC  198
      ||||||||||||||||| |||||||||  |||||||||||||||||||||
seq2  TGAGAGTTCTATGTCTTTATCCAAAGGCTGCTAGTGGAAGACTGACTTCC  200

seq1  AGGCAACTAGGGTGAGGA-TTTTATACCCACACCCACAGTGACACACCCA  247
      ||||| || |||| |||| | ||| |||||||| |||||||||||||| |
seq2  AGGCATCTGGGGT-AGGAGTATTAAACCCACACTCACAGTGACACACCTA  249

seq1  TTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTGC  297
       |||||||||||||||||||||||||||||||||||||| || |||||| 
seq2  CTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTCCAAATGGTGT  299

seq1  CACTCCCTGGTCCAAGGATATACAAACCATCACAGTG  334
      |||||||||||| ||| ||||||||||||||||||||
seq2  CACTCCCTGGTCAAAGAATATACAAACCATCACAGTG  336