BAC Information

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BAC

Clone NameB6Ng01-335O24
Chromosome15 (Build37)
Map Location 13,666,214 - 13,666,999
singlet/doubletsinglet
Overlap genenone
Upstream gene6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
Downstream geneLOC666708, LOC674819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335O24.bB6Ng01-335O24.g
ACCGA121011GA121012
length1,0271,198
definitionB6Ng01-335O24.b B6Ng01-335O24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcttccataacttgattttagacatgctgtttcattactctg
atagaaaaatagccaatgcaataccctttcaaaagttagatttgaccatc
tattcatccatccactcattcatccatccatccatccttcaatctagtat
gtatgtatgtatgtatgtatgtatgtatgtatgtatctaattaacattat
tattattattgttgttgttgttgttgttgagacacatacatagaatcaca
cggacactctggcacacacaggcacacccacacattcacttcatagtttt
taaatgtcaagagataggtaaaggtcaatagattaaaaaaaaaccaccct
gaaaacaataaggtttcctaagttaacagtagtaccctcaattccatttc
tgcatatataatatatacaagaaaataataccaatattttatgaaggtat
ctttgtcctcatgtttagtactgtaatattcactataaacataatacaga
aaaaatgaaactatctcttaatgaatagatgcacaaagaaatatgcatgt
agcatatgtatatatagcacaatatattacatattatataccatatgtaa
tacatgtttatattatatagtatctcatatatgagcagagagttattggt
tttccctacataaaaagagccattagttgccattatgacaatatgaatgc
ggcttgagggtattctgttcagtgaaataagccaaaccaaaagaacatgg
tttttacttaaatgtagagtattgttatcaaatttgagtttatggagaaa
cataaaaggaatggtggtttttcatggactgggagtttaggggatactga
tctatgttagacaaaaagttttccattatatactgtagtcttggagcttt
tagtgtgtactatgttgtgactatgggctagtacaacatttgtatccttc
ctatctgaaaacaggaagatattaaacctttctctcaccaataacagaag
tagttctggaagcaatgacttgtactg
gaattcttgcctgaggaataccaaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagccagaatggctaagatcaaacattcaggtgacagc
agatgctggctaggatgtggagagagaggaacactcttccattgttggtg
gaattgcaagcttgtacaaccactctgaaaatcagcctggtcgttcctca
gaaaactggacatagtactaccagaggatccttcaatacctctcctgggc
tatatccagaaggtgttccaactggtaagaaggacacatgctcaactatg
ttcatagcagccttatttgtaatagccagaagctggaaagaacccagatg
cccctcaacagagaaatggatacagaaaatgtggtacatttacagaatgg
agtactactcatctattaaaaagaatgaatttgtgaaattcctaggcaaa
tggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaaa
gaactcatatgatatgtactctctgataagtggatattagcccagaaact
tagaatacccaagatacaagatacaatttgcaaaacacataaaactcaag
aagaacgaagaccaaagtgtggacactttgctccttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaagattggaactgagacga
aaggatggaccatctagagactgccatatccgggggatccatcccataat
cagcttccaaatgctcacaccattgcatacactagcaagatttttgctga
aaggaccctgatatagctttctcttgtgaggctaatgccagggcctagca
aacacgggaagtggatgctcacagtcagcttattcgatgggatcacaggg
cccccaaatggaggagcctagagaaagtaccccaaggagctaaagggatc
tgcatctcttattagggtggaacaacaatatgaacctaccaagtaacccc
ccggagcctcattttctcttagcctgcaatatgtatcagagatggcctag
tcgggcatccagtgaaaagagagtcctcttggtttcttgccaccttatat
gcctcagtaagggtaatgtccgtggctcacaataagagtgggaagacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13666214_13666999
seq2: B6Ng01-335O24.b_273_1071 (reverse)

seq1  CAGTAC-AGTCATTGCTT-CAGAACTACTTCTGTT-TTGGTGAGAG-AAG  46
      |||||| ||||||||||| |||||||||||||||| |||||||||| |||
seq2  CAGTACAAGTCATTGCTTCCAGAACTACTTCTGTTATTGGTGAGAGAAAG  50

seq1  GTTTAATATCTTCCTGTTTTCAGATAGGAAGGATAC-AATGTTGTACTAG  95
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTTAATATCTTCCTGTTTTCAGATAGGAAGGATACAAATGTTGTACTAG  100

seq1  -CCATAGTCACAACATAGTACACACT-AAAGCTCCAAGACTACAGTATAT  143
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCCATAGTCACAACATAGTACACACTAAAAGCTCCAAGACTACAGTATAT  150

seq1  AATGGGAAAC-TTTTGTCTAACATAGATCAGTATCCCCT-AACTCCCAGT  191
      ||||| |||| |||||||||||||||||||||||||||| ||||||||||
seq2  AATGGAAAACTTTTTGTCTAACATAGATCAGTATCCCCTAAACTCCCAGT  200

seq1  CCATG-AAAACCACCATTCCTTTTTTGTTTCTCCATAAACTCAATTTTGA  240
      ||||| |||||||||||||||||| ||||||||||||||||||| |||||
seq2  CCATGAAAAACCACCATTCCTTTTATGTTTCTCCATAAACTCAAATTTGA  250

seq1  -AACAATACTCTACATTTAAGT-AAAACCATGTTCTTTTGGTTTGGCTTA  288
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAACAATACTCTACATTTAAGTAAAAACCATGTTCTTTTGGTTTGGCTTA  300

seq1  TTTCACTGAACAGAATACCCTCAAGCCGCATTCATATTGTCATAATGGCA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGAACAGAATACCCTCAAGCCGCATTCATATTGTCATAATGGCA  350

seq1  ACTAATGGCTCTTTTTATGTAGGGAAAACCAATAACTCTCTGCTCATATA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGGCTCTTTTTATGTAGGGAAAACCAATAACTCTCTGCTCATATA  400

seq1  TGAGATACTATATAATAT-AACATGTATTACATATGGTATATAATATGTA  437
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAGATACTATATAATATAAACATGTATTACATATGGTATATAATATGTA  450

seq1  ATATATTGTGCTATATATACATATGCTACATGCATATTTCTTTGTGCATC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGTGCTATATATACATATGCTACATGCATATTTCTTTGTGCATC  500

seq1  TATTCATTAAGAGATAGTTTCATTTTTTCTGTATTATGTTTATAGTGAAT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTAAGAGATAGTTTCATTTTTTCTGTATTATGTTTATAGTGAAT  550

seq1  ATTACAGTACTAAACATGAGGACAAAGATACCTTCATAAAATATTGGTAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTACTAAACATGAGGACAAAGATACCTTCATAAAATATTGGTAT  600

seq1  TATTTTCTTGTATATATTATATATGCAGAAATGGAATTGAGGGTACTACT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTGTATATATTATATATGCAGAAATGGAATTGAGGGTACTACT  650

seq1  GTTAACTTAGGAAACCTTATTGTTTCCAGGGTGGTTTTTTTTTAATCTAT  687
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTAACTTAGGAAACCTTATTGTTTTCAGGGTGGTTTTTTTTTAATCTAT  700

seq1  TGACCTTTACCTATCTCTTGACATCTAAAAACTATGAAGTGAATGTGTGT  737
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  TGACCTTTACCTATCTCTTGACATTTAAAAACTATGAAGTGAATGTGTGG  750

seq1  GTGTGCCTGTGTGTGCCTGTGTGTCTGTGTGTGTCTATGTATGTGTCTC  786
      ||||||||||||||||| | ||||| |||||  ||||||||||||||||
seq2  GTGTGCCTGTGTGTGCCAGAGTGTCCGTGTGATTCTATGTATGTGTCTC  799