BAC Information

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BAC

Clone NameB6Ng01-336C23
Chromosome15 (Build37)
Map Location 98,781,056 - 98,958,986
singlet/doubletdoublet
Overlap geneTuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2
Upstream geneTmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b
Downstream geneKcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336C23.bB6Ng01-336C23.g
ACCGA121183GA121184
length538652
definitionB6Ng01-336C23.b B6Ng01-336C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,958,443 - 98,958,986)(98,781,056 - 98,781,707)
sequence
attttgtaaaccaggctggcctcgaactcacagagatctgcctgcttctg
cctcctgagtgctgggattaaaagcatgcatggccaccatcaggctataa
gtaagaatttttaaaggtacattttaggtcatgattttttttgatattta
gaaggtggcctaatgctgcccgctatcagaaacacagctgaaaactataa
acggatgactgcccagaaattttagtttagatgagtcagcaaaacttcac
gtctcaccaatgaaaagcttaacgcacacatctatgaatgcataatgata
ataatagcttcagaatcagtgatcttccagtcagtgctgtatcaaatttg
gcctggaaattaaagtataaagaagatacaggcccagcctcacagctgta
atcccagcagctgggagtctgaggcaaaagaactttacttcaaaggctaa
ctggggttacacaataggtcacaagccagcctaggttactgataaagact
aagaccacccccaaggggggagtctgggggggggggtg
gaattctgtcagatcaacattcagggccccatcaaatctgagggaagcag
tgatggaagacacaatttgacctatcaacctgtttaggttagtgtaggtt
gggcgctcaatgtcgaggtttctacgacagatatcatagatggcctcatt
gtctaccatgaaggcacaatcagagtgctccagggtggtgtgggtggtga
ggatggaattgtagggctcaaccacagcagtggaaacctggggggctggg
taaatggagaactccagcttggacttctttccgtaatccacagagagccg
ctccatcagcagggaggtgaagccagagccagttcccccgccaaagctgt
ggaaaaccaagaagccctggagacctgtgcactggtcagcctgtgggaga
aaaggaaatgtaatgttttattaggagggcatactcttagcactatttgc
aattcctttagattgggagccatatttgcttgatagaaaagacttgacag
attctgacagataccaagacaccctcccactgcattttaaacccatccat
atatggcatttacctgcttgctaatcctgtccaggacaaggtcaatgatc
tccttgccaatggtgtagtggccacgagcatagttattggcagcatcctc
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98958443_98958986
seq2: B6Ng01-336C23.b_43_586 (reverse)

seq1  CACCCCCCCCCCCAGACTCCCCCCTTGGGGGTGGTCTTAGTCTTTATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCCCCCCAGACTCCCCCCTTGGGGGTGGTCTTAGTCTTTATCAG  50

seq1  TAACCTAGGCTGGCTTGTGACCTATTGTGTAACCCCAGTTAGCCTTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAGGCTGGCTTGTGACCTATTGTGTAACCCCAGTTAGCCTTTGAA  100

seq1  GTAAAGTTCTTTTGCCTCAGACTCCCAGCTGCTGGGATTACAGCTGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTTCTTTTGCCTCAGACTCCCAGCTGCTGGGATTACAGCTGTGAG  150

seq1  GCTGGGCCTGTATCTTCTTTATACTTTAATTTCCAGGCCAAATTTGATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCCTGTATCTTCTTTATACTTTAATTTCCAGGCCAAATTTGATAC  200

seq1  AGCACTGACTGGAAGATCACTGATTCTGAAGCTATTATTATCATTATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGACTGGAAGATCACTGATTCTGAAGCTATTATTATCATTATGCA  250

seq1  TTCATAGATGTGTGCGTTAAGCTTTTCATTGGTGAGACGTGAAGTTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGATGTGTGCGTTAAGCTTTTCATTGGTGAGACGTGAAGTTTTGC  300

seq1  TGACTCATCTAAACTAAAATTTCTGGGCAGTCATCCGTTTATAGTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATCTAAACTAAAATTTCTGGGCAGTCATCCGTTTATAGTTTTCA  350

seq1  GCTGTGTTTCTGATAGCGGGCAGCATTAGGCCACCTTCTAAATATCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTTTCTGATAGCGGGCAGCATTAGGCCACCTTCTAAATATCAAAA  400

seq1  AAAATCATGACCTAAAATGTACCTTTAAAAATTCTTACTTATAGCCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATGACCTAAAATGTACCTTTAAAAATTCTTACTTATAGCCTGAT  450

seq1  GGTGGCCATGCATGCTTTTAATCCCAGCACTCAGGAGGCAGAAGCAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCATGCATGCTTTTAATCCCAGCACTCAGGAGGCAGAAGCAGGCA  500

seq1  GATCTCTGTGAGTTCGAGGCCAGCCTGGTTTACAAAATGAATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGTGAGTTCGAGGCCAGCCTGGTTTACAAAATGAATTC  544

seq1: chr15_98781056_98781707
seq2: B6Ng01-336C23.g_63_714

seq1  GAATTCTGTCAGATCAACATTCAGGGCCCCATCAAATCTGAGGGAAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCAGATCAACATTCAGGGCCCCATCAAATCTGAGGGAAGCAG  50

seq1  TGATGGAAGACACAATTTGACCTATCAACCTGTTTAGGTTAGTGTAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAAGACACAATTTGACCTATCAACCTGTTTAGGTTAGTGTAGGTT  100

seq1  GGGCGCTCAATGTCGAGGTTTCTACGACAGATATCATAGATGGCCTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCTCAATGTCGAGGTTTCTACGACAGATATCATAGATGGCCTCATT  150

seq1  GTCTACCATGAAGGCACAATCAGAGTGCTCCAGGGTGGTGTGGGTGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCATGAAGGCACAATCAGAGTGCTCCAGGGTGGTGTGGGTGGTGA  200

seq1  GGATGGAATTGTAGGGCTCAACCACAGCAGTGGAAACCTGGGGGGCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAATTGTAGGGCTCAACCACAGCAGTGGAAACCTGGGGGGCTGGG  250

seq1  TAAATGGAGAACTCCAGCTTGGACTTCTTTCCGTAATCCACAGAGAGCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAGAACTCCAGCTTGGACTTCTTTCCGTAATCCACAGAGAGCCG  300

seq1  CTCCATCAGCAGGGAGGTGAAGCCAGAGCCAGTTCCCCCGCCAAAGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCAGCAGGGAGGTGAAGCCAGAGCCAGTTCCCCCGCCAAAGCTGT  350

seq1  GGAAAACCAAGAAGCCCTGGAGACCTGTGCACTGGTCAGCCTGTGGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCAAGAAGCCCTGGAGACCTGTGCACTGGTCAGCCTGTGGGAGA  400

seq1  AAAGGAAATGTAATGTTTTATTAGGAGGGCATACTCTTAGCACTATTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATGTAATGTTTTATTAGGAGGGCATACTCTTAGCACTATTTGC  450

seq1  AATTCCTTTAGATTGGGAGCCATATTTGCTTGATAGAAAAGACTTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTTAGATTGGGAGCCATATTTGCTTGATAGAAAAGACTTGACAG  500

seq1  ATTCTGACAGATACCAAGACACCCTCCCACTGCATTTTAAACCCATCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACAGATACCAAGACACCCTCCCACTGCATTTTAAACCCATCCAT  550

seq1  ATATGGCATTTACCAGCTTGCGAATCCTGTCCAGGACAAGGTCAATGATC  600
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  ATATGGCATTTACCTGCTTGCTAATCCTGTCCAGGACAAGGTCAATGATC  600

seq1  TCCTTGCCAATGGTGTAGTGGCCACGAGCATAGTTATTGGCAGCATCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCCAATGGTGTAGTGGCCACGAGCATAGTTATTGGCAGCATCCTC  650

seq1  CT  652
      ||
seq2  CT  652