BAC Information

Click to search

BAC

Clone NameB6Ng01-336P17
Chromosome15 (Build37)
Map Location 82,874,254 - 83,023,033
singlet/doubletdoublet
Overlap geneSerhl, 1110014J01Rik, Poldip3, Cyb5r3
Upstream geneNhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1
Downstream geneA4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336P17.bB6Ng01-336P17.g
ACCGA121745GA121746
length1,133875
definitionB6Ng01-336P17.b B6Ng01-336P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,874,254 - 82,875,366)(83,022,163 - 83,023,033)
sequence
gaattccataacctttgttactttttgcctctgtggacactgagagccta
gacctttcgtgtgagatctggcttgcttgctctttgggaaagatgtgtga
cctcagcacccagtcctttctatttgaaggttccctgccatccccatgga
taaggaagctaagtgatttttcccaggccagttgatggcctttgagccag
tgggtggctggccccactcaggtcagtgtagggcagctagtgccggagcc
cggcaggatggctaactcaggaggggtccagttctactgccaggtcctgc
atggctgtctacagtgggaaaaaagtgtctggccttgtgcagatggcggc
aggacagcaagcaggctaaggacaatctggcaagcaaaagaaccagaaag
ttgggggagggcaggaaaagcaagccgccattgttggggcgtggggaaga
agtttgctgggcaggcccgacacagcagaaagacatgagtgaaacggttg
ggagaagagagtgggcgggcgccatggaccttatgaggaatggcaagctg
tgaccctctgcttaggggctgtttctagctcacctgccccaggcaaggcc
tggagaatgaaccgacagacaggggagggaatagtgtgatggtgaccaca
gaggccagccaggggctggtccagcttgttttgctactcaactgctttct
tcatgttcctaaccccccaagtacagtaaaacaaaacaaaacaaaaacct
tttatctcaagaacacacacacacactcacacacacaagagtgaagtgcc
ccgtggccgcctgggaagagcagaggatttggtagcacccccagggcacc
cacaggtagggaactggagtcctcaagggtgctcggtgggtggaaccgat
gactcaacaatgaagagcacctgctcttgcgggagcatccagaatcgaat
tcttcagcttacacctgtctgtaacaacaagtcctaggagatacaaacat
ccgtttctgcctcctctaaggagccaccaggcaattcattacaggacatt
taaggcaggcaaaccaggccatacaccgcaaaccataacataaatgcctc
atggccctggaacgctagaagatagggttgggg
gaattcactatataagccaggctggccacagagaacagcctgcctctgcc
ttcccagtgccgagattaaaggttgtgcaccaccacacctggccttgtaa
gtttgtttgtttatgtatttgtgtatttatgtattatttatgtatttact
tacttacatgtatgagctcgtgcctgtggaggccagctgaagaagaagaa
gccagatacctgtctcggaagtttggaacagaactcaggccttctagaac
tgcagcaagtgatcttaaccacacagctctctctctgctgcccaacttgc
ctacgggaaggttttcctacaggactcagatccctccattcagttacaag
ttttccttatgttctatttcccagcttggagaatgcttgatgtttcagtt
gcatgagaggatttggcaagcaccaactggcttgggaacaaaagcccttg
ctactgtgaggcagaggagaggagggatggtctggagaaggacgggggtc
caggttccctctgggcacagagcaaggcaccagacccagaacagacatgc
ccagcttctgtctcctgcaggggtgctggcaatacccgcagggctggaaa
tggtgtggtaccttcctaccttctccaaagcttaagtaaaaccaggagtc
cctggtggccccactattggcacttgcatggcagcgtgctctctgccccc
ctttctttactccagggcactttctatccccagattgctgtagaacatga
tgaccctctgagcaaagcagccaccatgtttatcagaccaactgtgcttg
tttgtgagcatccatggtcatagggcttgtttggctgttggcattctctt
ataaaggagtggttggggggagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82874254_82875366
seq2: B6Ng01-336P17.b_48_1180

seq1  GAATTCCATAACCTTTGTTACTTTTTGCCTCTGTGGACACTGAGAGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAACCTTTGTTACTTTTTGCCTCTGTGGACACTGAGAGCCTA  50

seq1  GACCTTTCGTGTGAGATCTGGCTTGCTTGCTCTTTGGGAAAGATGTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTCGTGTGAGATCTGGCTTGCTTGCTCTTTGGGAAAGATGTGTGA  100

seq1  CCTCAGCACCCAGTCCTTTCTATTTGAAGGTTCCCTGCCATCCCCATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCACCCAGTCCTTTCTATTTGAAGGTTCCCTGCCATCCCCATGGA  150

seq1  TAAGGAAGCTAAGTGATTTTTCCCAGGCCAGTTGATGGCCTTTGAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGCTAAGTGATTTTTCCCAGGCCAGTTGATGGCCTTTGAGCCAG  200

seq1  TGGGTGGCTGGCCCCACTCAGGTCAGTGTAGGGCAGCTAGTGCCGGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGCTGGCCCCACTCAGGTCAGTGTAGGGCAGCTAGTGCCGGAGCC  250

seq1  CGGCAGGATGGCTAACTCAGGAGGGGTCCAGTTCTACTGCCAGGTCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGGATGGCTAACTCAGGAGGGGTCCAGTTCTACTGCCAGGTCCTGC  300

seq1  ATGGCTGTCTACAGTGGGAAAAAAGTGTCTGGCCTTGTGCAGATGGCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTCTACAGTGGGAAAAAAGTGTCTGGCCTTGTGCAGATGGCGGC  350

seq1  AGGACAGCAAGCAGGCTAAGGACAATCTGGCAAGCAAAAGAACCAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCAAGCAGGCTAAGGACAATCTGGCAAGCAAAAGAACCAGAAAG  400

seq1  TTGGGGGAGGGCAGGAAAAGCAAGCCGCCATTGTTGGGGCGTGGGGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGAGGGCAGGAAAAGCAAGCCGCCATTGTTGGGGCGTGGGGAAGA  450

seq1  AGTTTGCTGGGCAGGCCCGACACAGCAGAAAGACATGAGTGAAACGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTGGGCAGGCCCGACACAGCAGAAAGACATGAGTGAAACGGTTG  500

seq1  GGAGAAGAGAGTGGGCGGGCGCCATGGACCTTATGAGGAATGGCAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAGAGTGGGCGGGCGCCATGGACCTTATGAGGAATGGCAAGCTG  550

seq1  TGACCCTCTGCTTAGGGGCTG-TTCTAGCTCACCTGCCCCAGGCAAGGCC  599
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGACCCTCTGCTTAGGGGCTGTTTCTAGCTCACCTGCCCCAGGCAAGGCC  600

seq1  TGGAGAATGAACCGACAGACAGGGGAGGGAATAGTGTGATGGTGACCACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATGAACCGACAGACAGGGGAGGGAATAGTGTGATGGTGACCACA  650

seq1  GAGGCCAGCCAGGGGCTGGTCCAGCTTGTTTTGCTACTCAACTGCTTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCAGGGGCTGGTCCAGCTTGTTTTGCTACTCAACTGCTTTCT  700

seq1  TCATGTTCCTAACCCCCCAAGTACAGTAAAACAAAACAAAACAAAAACCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCCTAACCCCCCAAGTACAGTAAAACAAAACAAAACAAAAACCT  750

seq1  TTTATCTCAAGAACACACACACACACTCACACACACAAGAGTGAAGTGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCAAGAACACACACACACACTCACACACACAAGAGTGAAGTGCC  800

seq1  CCGTGGCCGCCTGGGAAGAGCAGAGGATTTGGTAGCACCCCCAGGGCACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGCCGCCTGGGAAGAGCAGAGGATTTGGTAGCACCCCCAGGGCACC  850

seq1  CACAGGTAGGGAACTGGAGTCCTCAAGGGTGCTCGGTGGGTGGAA-CGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACAGGTAGGGAACTGGAGTCCTCAAGGGTGCTCGGTGGGTGGAACCGAT  900

seq1  GACTCAACAATGAAGAGCA-CTGCTCTTGC-GGAGCATCCAGAATCG-AT  945
      ||||||||||||||||||| |||||||||| |||||||||||||||| ||
seq2  GACTCAACAATGAAGAGCACCTGCTCTTGCGGGAGCATCCAGAATCGAAT  950

seq1  TC-TCAGCTTACAACTGTCTGTAACAAC-AGTCCTAGGAGATAC-AACAT  992
      || |||||||||| |||||||||||||| ||||||||||||||| |||||
seq2  TCTTCAGCTTACACCTGTCTGTAACAACAAGTCCTAGGAGATACAAACAT  1000

seq1  CCGTTTCTGC--TCTCT-AGGAG-CACCAGGCAA-TCA-TACAGGGACAT  1036
      ||||||||||   |||| ||||| |||||||||| ||| |||| ||||||
seq2  CCGTTTCTGCCTCCTCTAAGGAGCCACCAGGCAATTCATTACA-GGACAT  1049

seq1  TTAA-GCAGGCAAA-CAGGCCATACA-CACAAA-CATAAAATAAAATGCC  1082
      |||| ||||||||| ||||||||||| | |||| ||||| || |||||||
seq2  TTAAGGCAGGCAAACCAGGCCATACACCGCAAACCATAACAT-AAATGCC  1098

seq1  -CATGGCCCCTGGACGCTAGA--GTAGGGTGGGG-  1113
       ||||||||  | ||||||||   |||||| ||| 
seq2  TCATGGCCCTGGAACGCTAGAAGATAGGGTTGGGG  1133

seq1: chr15_83022163_83023033
seq2: B6Ng01-336P17.g_66_940 (reverse)

seq1  ACCCTCCCCC--ACCACTCCTTTATAAGAGAATGCCAACAGCC-AACAAG  47
      ||||||||||  ||||||||||||||||||||||||||||||| ||||||
seq2  ACCCTCCCCCCAACCACTCCTTTATAAGAGAATGCCAACAGCCAAACAAG  50

seq1  CCCTATGACCATGGATGCTCACAAACAAGCACAGTTGGTCTGATAAACAT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGACCATGGATGCTCACAAACAAGCACAGTTGGTCTGATAAACAT  100

seq1  GGTGGCTGCTTTGCTCAGAGGGTCATCATGTTCTACAGCAATCTGGGGAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTGCTTTGCTCAGAGGGTCATCATGTTCTACAGCAATCTGGGGAT  150

seq1  AG-AAGTGCCCTGGAGTAAAGAAAGGGGGGCAGAGAGCACGCTGCCATGC  196
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGCCCTGGAGTAAAGAAAGGGGGGCAGAGAGCACGCTGCCATGC  200

seq1  AAGTGCCAATAGTGGGGCCACCAGGGACTCCTGGTTTTACTTAAGCTTTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAATAGTGGGGCCACCAGGGACTCCTGGTTTTACTTAAGCTTTG  250

seq1  GAGAAGGTAGGAAGGTACCACACCATTTCCAGCCCTGCGGGTATTGCCAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGTAGGAAGGTACCACACCATTTCCAGCCCTGCGGGTATTGCCAG  300

seq1  CACCCCTGCAGGAGACAGAAGCTGGGCATGTCTGTTCTGGGTCTGGTGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTGCAGGAGACAGAAGCTGGGCATGTCTGTTCTGGGTCTGGTGCC  350

seq1  TTGCTCTGTGCCCAGAGGGAACCTGGACCCCCGTCCTTCTCCAGACCATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGTGCCCAGAGGGAACCTGGACCCCCGTCCTTCTCCAGACCATC  400

seq1  CCTCCTCTCCTCTGCCTCACAGTAGCAAGGGCTTTTGTTCCCAAGCCAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTCCTCTGCCTCACAGTAGCAAGGGCTTTTGTTCCCAAGCCAGT  450

seq1  TGGTGCTTGCCAAATCCTCTCATGCAACTGAAACATCAAGCATTCTCCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTGCCAAATCCTCTCATGCAACTGAAACATCAAGCATTCTCCAA  500

seq1  GCTGGGAAATAGAACATAAGGAAAACTTGTAACTGAATGGAGGGATCTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAAATAGAACATAAGGAAAACTTGTAACTGAATGGAGGGATCTGA  550

seq1  GTCCTGTAGGAAAACCTTCCCGTAGGCAAGTTGGGCAGCAGAGAGAGAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTAGGAAAACCTTCCCGTAGGCAAGTTGGGCAGCAGAGAGAGAGC  600

seq1  TGTGTGGTTAAGATCACTTGCTGCAGTTCTAGAAGGCCTGAGTTCTGTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTTAAGATCACTTGCTGCAGTTCTAGAAGGCCTGAGTTCTGTTC  650

seq1  CAAACTTCCGAGACAGGTATCTGGCTTCTTCTTCTTCAGCTGGCCTCCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCCGAGACAGGTATCTGGCTTCTTCTTCTTCAGCTGGCCTCCAC  700

seq1  AGGCACGAGCTCATACATGTAAGTAAGTAAATACATAAATAATACATAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACGAGCTCATACATGTAAGTAAGTAAATACATAAATAATACATAAA  750

seq1  TACACAAATACATAAACAAACAAACTTACAAGGCCAGGTGTGGTGGTGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAATACATAAACAAACAAACTTACAAGGCCAGGTGTGGTGGTGCA  800

seq1  CAACCTTTAATCTCGGCACTGGGAAGGCAGAGGCAGGCTGTTCTCTGTGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTAATCTCGGCACTGGGAAGGCAGAGGCAGGCTGTTCTCTGTGG  850

seq1  CCAGCCTGGCTTATATAGTGAATTC  871
      |||||||||||||||||||||||||
seq2  CCAGCCTGGCTTATATAGTGAATTC  875