BAC Information

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BAC

Clone NameB6Ng01-337C08
Chromosome15 (Build37)
Map Location 29,385,781 - 29,539,244
singlet/doubletdoublet
Overlap genenone
Upstream geneDnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337C08.bB6Ng01-337C08.g
ACCGA121860GA121861
length1,126987
definitionB6Ng01-337C08.b B6Ng01-337C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,538,124 - 29,539,244)(29,385,781 - 29,386,516)
sequence
gaattctgtaaaatgcactttgatcacatccactttctttttccaactgt
tcccacattcaagtccccttctctacacatccaatattgaagttatttct
aattatattttctagaatacctggttttactggtaaatttttcattatct
ttgttattttacatactacttactatacaagggtagtgtcaggctccctg
tcatgatcaaatagtaatttgcagcctttaaataaaataagtaacaaata
caagtaaaataaatcatgtatattaatagatgtaaacacaacaggggttt
tgaacatttgattgaaatatcattaagttctaatggctagcggaagtctt
gttatgcccttcctttcaaataaaagcaatcattacaattgactcttttt
aaagcatttaatacaatataagatggaagtagctcatctttaacaacaat
ggctgattcttattctaagatgtgtgggctgatggtccaaagtgcaattt
tgagccaacattggtcactcctcccatgaagaaacagctaacatttttat
atgttaataattcatataatcatgagaggagaacaaaagcagaaacttcc
ggtgggcaaggaaatgttaagtggtagagacaaagaatatggtagctttt
cagtaacagaattatctcctctgcacatatttgagtaaggagctgtaata
gtgtgtatgttctatttcataaaaagacttgccattggctggcatataga
agaaaataatgatctattctcatttctaacaagtggatgcagaagttgta
atttgtgttctgtgtgcatactcaaagcagcatacttaaaaagtcaaggg
tcgaaattgactgcaagaactgtaaaaagtctaaatttaacgagcttttg
taaccaggacgattgctctgaggacaatttaaacagtgaaaagaagtaag
tgggttttgtgcagcaattcccatgtgaaatcttcagaagaaagcgcagt
ttcttattataataaataaaatgaagcaaagtctgtgctctggagaacgc
aattgttggtggtgaaatgaactatcaggagctggactgtagctcagaac
ataaacatttattgtcagtccctaaa

gaattctttctcaggtatattgttggtgaactatattctatgtgctaaaa
taaactctttctcaagttgcttttgtccagtgtttcaactcagcaactaa
aagctaactagaacaaagttggtaccaggaatagtgaggtattgttgtga
tggacttgaacatgttgaattatttttgagatgattgtgaaaaatgttta
gaattttaggctaaacatgctcagctcttaatgagctgttgtgatagagt
ttgaatgtgaaagtttagacatgtgaaatgttagatgtaagtaaaggctg
tatgggggctgatactgtgatgtttttaattaaaaaaatatgtggtttct
aggcagctagggctgaactctcagctgtaattaattagagaccagcatca
ttaatgagaatctccaaaaagtatttccttggtgtcaaagctgtgtttca
gagggccaaggctgtatctctagctggtaactgaacctggtaatgagcat
tcaacccatgcatgtattgtatttcttttgaatcatggaaagtaatggag
gcttggccccatgtacaaacgtggagtctctgaagaaaggtaaaaggatc
atttgtcaagtttcatttctagttgcagtgcaggcttcggtagtaagaag
atcatgatgagaggcactagattagtaccattgagagaccaagagaggat
acaggtgaagatgctacgcccattgtaatgtagtcccaagcatttagaag
atactctgaacatagaacatatgctatggctcatagtttgtccaacaatc
agagaagcatgggaggtaattgagaatgacagcaagcctgttattggtac
atgacagacaggtagaacaatggaatataattgaagacccagaaataaac
catatacctatagatacttgatctttgacaagaaacagaaaggaaggaag
gaaggaaggaaggaaggaaggaaggaaggaagagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29538124_29539244
seq2: B6Ng01-337C08.b_46_1171 (reverse)

seq1  TTTAAGGACTGACA--TAATGTTTATGTTCTGAGCTACAGTCCCAGCTCC  48
      |||| |||||||||   |||||||||||||||||||||||| ||||||||
seq2  TTTAGGGACTGACAATAAATGTTTATGTTCTGAGCTACAGT-CCAGCTCC  49

seq1  TGGTTAGTTCA-TTCA-CACCAAC-ATTGCGTTCTCCAGAGCACAGACTT  95
      | | ||||||| |||| ||||||| |||||||||||||||||||||||||
seq2  T-GATAGTTCATTTCACCACCAACAATTGCGTTCTCCAGAGCACAGACTT  98

seq1  TGCTTTCATTTTATTTATTATAAT-AGAAACTGCGCTTTCTTCCTGAAGA  144
      ||| |||||||||||||||||||| ||||||||||||||||| |||||||
seq2  TGC-TTCATTTTATTTATTATAATAAGAAACTGCGCTTTCTT-CTGAAGA  146

seq1  TTTCACATGGG-ATTGCTGCACAAAA-CCACTTACTTC-TTTCACTGTTT  191
      ||||||||||| |||||||||||||| ||||||||||| |||||||||||
seq2  TTTCACATGGGAATTGCTGCACAAAACCCACTTACTTCTTTTCACTGTTT  196

seq1  AAATTGTCCTCAGAGCAATCGTCCTGGTTACAAAAGCTCGTTAAATTTAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCCTCAGAGCAATCGTCCTGGTTACAAAAGCTCGTTAAATTTAG  246

seq1  ACTTTTTACAGTTCTTGCAGTCAATTTCGACCCTTGACTTTTTAAGTATG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTACAGTTCTTGCAGTCAATTTCGACCCTTGACTTTTTAAGTATG  296

seq1  CTGCTTTGAGTATGCACACAGAACACAAATTACAACTTCTGCATCCACTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGAGTATGCACACAGAACACAAATTACAACTTCTGCATCCACTT  346

seq1  GTTAGAAATGAGAATAGATCATTATTTTCTTCTATATGCCAGCCAATGGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAATGAGAATAGATCATTATTTTCTTCTATATGCCAGCCAATGGC  396

seq1  AAGTCTTTTTATGAAATAGAACATACACACTATTACAGCTCCTTACTCAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTTTATGAAATAGAACATACACACTATTACAGCTCCTTACTCAA  446

seq1  ATATGTGCAGAGGAGATAATTCTGTTACTGAAAAGCTACCATATTCTTTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGCAGAGGAGATAATTCTGTTACTGAAAAGCTACCATATTCTTTG  496

seq1  TCTCTACCACTTAACATTTCCTTGCCCACCGGAAGTTTCTGCTTTTGTTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCACTTAACATTTCCTTGCCCACCGGAAGTTTCTGCTTTTGTTC  546

seq1  TCCTCTCATGATTATATGAATTATTAACATATAAAAATGTTAGCTGTTTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCATGATTATATGAATTATTAACATATAAAAATGTTAGCTGTTTC  596

seq1  TTCATGGGAGGAGTGACCAATGTTGGCTCAAAATTGCACTTTGGACCATC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGAGGAGTGACCAATGTTGGCTCAAAATTGCACTTTGGACCATC  646

seq1  AGCCCACACATCTTAGAATAAGAATCAGCCATTGTTGTTAAAGATGAGCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACACATCTTAGAATAAGAATCAGCCATTGTTGTTAAAGATGAGCT  696

seq1  ACTTCCATCTTATATTGTATTAAATGCTTTAAAAAGAGTCAATTGTAATG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATCTTATATTGTATTAAATGCTTTAAAAAGAGTCAATTGTAATG  746

seq1  ATTGCTTTTATTTGAAAGGAAGGGCATAACAAGACTTCCGCTAGCCATTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTTATTTGAAAGGAAGGGCATAACAAGACTTCCGCTAGCCATTA  796

seq1  GAACTTAATGATATTTCAATCAAATGTTCAAAACCCCTGTTGTGTTTACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAATGATATTTCAATCAAATGTTCAAAACCCCTGTTGTGTTTACA  846

seq1  TCTATTAATATACATGATTTATTTTACTTGTATTTGTTACTTATTTTATT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAATATACATGATTTATTTTACTTGTATTTGTTACTTATTTTATT  896

seq1  TAAAGGCTGCAAATTACTATTTGATCATGACAGGGAGCCTGACACTACCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCTGCAAATTACTATTTGATCATGACAGGGAGCCTGACACTACCC  946

seq1  TTGTATAGTAAGTAGTATGTAAAATAACAAAGATAATGAAAAATTTACCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGTAAGTAGTATGTAAAATAACAAAGATAATGAAAAATTTACCA  996

seq1  GTAAAACCAGGTATTCTAGAAAATATAATTAGAAATAACTTCAATATTGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACCAGGTATTCTAGAAAATATAATTAGAAATAACTTCAATATTGG  1046

seq1  ATGTGTAGAGAAGGGGACTTGAATGTGGGAACAGTTGGAAAAAGAAAGTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAGAGAAGGGGACTTGAATGTGGGAACAGTTGGAAAAAGAAAGTG  1096

seq1  GATGTGATCAAAGTGCATTTTACAGAATTC  1121
      ||||||||||||||||||||||||||||||
seq2  GATGTGATCAAAGTGCATTTTACAGAATTC  1126


seq1: chr15_29385781_29386516
seq2: B6Ng01-337C08.g_322_1053

seq1  TGTGAAAGTTTAGACATGTGAAATGTTAGATGTAAGTAAAGGCTGTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGTTTAGACATGTGAAATGTTAGATGTAAGTAAAGGCTGTATGG  50

seq1  GGGCTGATACTGTGATGTTTTTAATTAAAAAAATATGTGGTTTCTAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGATACTGTGATGTTTTTAATTAAAAAAATATGTGGTTTCTAGGCA  100

seq1  GCTAGGGCTGAACTCTCAGCTGTAATTAATTAGAGACCAGCATCATTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGCTGAACTCTCAGCTGTAATTAATTAGAGACCAGCATCATTAAT  150

seq1  GAGAATCTCCAAAAAGTATTTCCTTGGTGTCAAAGCTGTGTTTCAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTCCAAAAAGTATTTCCTTGGTGTCAAAGCTGTGTTTCAGAGGG  200

seq1  CCAAGGCTGTATCTCTAGCTGGTAACTGAACCTGGTAATGAGCATTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTGTATCTCTAGCTGGTAACTGAACCTGGTAATGAGCATTCAAC  250

seq1  CCATGCATGTATTGTATTTCTTTTGAATCATGGAAAGTAATGGAGGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCATGTATTGTATTTCTTTTGAATCATGGAAAGTAATGGAGGCTTG  300

seq1  GCCCCATGTACAAACGTGGAGTCTCTGAAGAAAGGTAAAAGGATCATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATGTACAAACGTGGAGTCTCTGAAGAAAGGTAAAAGGATCATTTG  350

seq1  TCAAGTTTCATTTCTAGTTGCAGTGCAGGCTTCGGTAGTAAGAAGATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTCATTTCTAGTTGCAGTGCAGGCTTCGGTAGTAAGAAGATCAT  400

seq1  GATGAGAGGCACTAGATTAGTACCATTGAGAGACCAAGAGAGGATACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAGGCACTAGATTAGTACCATTGAGAGACCAAGAGAGGATACAGG  450

seq1  TGAAGATGCTACGCCCATTGTAATGTAGTCCCAAGCATTTAGAAGATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGCTACGCCCATTGTAATGTAGTCCCAAGCATTTAGAAGATACT  500

seq1  CTGAACATAGAACATATGCTATGGCTCATAGTTTGTCCAACAATCAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATAGAACATATGCTATGGCTCATAGTTTGTCCAACAATCAGAGA  550

seq1  AGCATGGGAGGTAATTGAGAATGACAGCAAGCCTGTTATTGGTACAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCATGGGAGGTAATTGAGAATGACAGCAAGCCTGTTATTGGTAC-ATGA  599

seq1  CAGACAGGTAGAACAATGGAATATAATTGAAGACCCAGAAATAAACCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGTAGAACAATGGAATATAATTGAAGACCCAGAAATAAACCATA  649

seq1  TACCTATAGATACTTGATCTTTGACAAAGAAACAGAAAGGAAGGAAGGAA  700
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACCTATAGATACTTGATCTTTGAC-AAGAAACAGAAAGGAAGGAAGGAA  698

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAA  736
      |||||||||||||||||||||||||||||  |||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAG--AGAAA  732


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