BAC Information

Click to search

BAC

Clone NameB6Ng01-338P17
Chromosome15 (Build37)
Map Location 56,271,997 - 56,390,143
singlet/doubletdoublet
Overlap genenone
Upstream geneCol14a1, Mrpl13, Mtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
Downstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984, BC026439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338P17.bB6Ng01-338P17.g
ACCGA123109GA123110
length1,1961,063
definitionB6Ng01-338P17.b B6Ng01-338P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,388,943 - 56,390,143)(56,271,997 - 56,273,060)
sequence
gaattctttcctgatattattggagagattctctgaaagtgagtatataa
atgaatataatttatggctcctggaatattaatttctggctaggtacagt
cagataactcatgcatccaagcatttaatcattgactaaatttccaaaat
gatcatttaagtaatgtacaataccacatatctatccacacattctttaa
gtcaccatgttgcctgttgtaaggactatttatagcatgtaagatttcca
aagtcatccaattcagcacgccttttaatagtggtattttctcattaaaa
aaaatgatgtggatttataatgttccaaaagcacacttctaagtcagaaa
caagaaacaaaaagcatgaataagttgtctgaatctcctaattcttgctg
ggcttcggaaacctgaatatctttacagtggcaggaactatgggaaggtt
ttagaagaaaaatacatctagaaaatttggatcatgatgaattaaattgt
aataaatactctatcctcatttataccgaggcatccatgactccttttta
aaatagacaagcacagattaatcacaatgaaaggggtgtgtgtagttata
gtgacataaatgtgttagcattttctcacaatgaagagcatcgtagagaa
gcctcttatttttttgttaattattttatttatttacatccaaacattct
aaaccccttattccccctatcagagttcttcctgcatccccactctcctt
cacctctaatagggtggcccccttgggaatttccccatcctgtggcacgg
agtttggagaagcatttttaaagagaggagaggtttattttagctgccag
cttcaaaggtttcagacatgttcactaggttctgctttttttttgggtgg
gggggagcatactgaaatagaatatatatgatgaaaaagtcacatgggta
cagcccaagaagtttcatctcattacagttgtgaaaaaggcaaataaaaa
aacgacccaagacagggctttttaacatttgtttggcacgctcccaaaga
tccttcatcttcattctatcatttatttatctatcaatacttaacgtatg
atgagtcggaattctcattcactcccaaggtctacactctgatgctgatt
gtccattggtgaaaatcttcaataaaagacggttgcctattcatac

gaattctactttcagagaaagcattagccccttgagaaggctgaaaaatt
atattgtgacgtttgtgttttaactatttttaatggttccaattatcttt
ctaaaatttagctatggcatattatgaaaataatttcatccaactttgct
aaggtattttataataaaagttctttctagaaaatttttcgtgctgaaaa
aaacttcaaaatagatattcattttataatcttaccttggtgttatttta
tcctttattccctattatactaagtaatgtatgtaagttttcaagaggca
ctgaatatcctatacattttaagcactgaagcaaaattttgaaaataaat
aagtagatttgttctttttttttttttgcctaaaaagccttctaattcag
atataatacaaacacaatattatgaatataaaatggccttttaaataaag
ttgtgtatagaaagatttgtaaacatctaattggcaattttgatttatta
aaatagacctccaaatttttgaacaatagggaataactgagggcaaacct
ctaaaatgaaaataccactagatagagaggagatatagatgagacactgt
ggtgaatacatgctaaaaggcaggaggggaagtcacgggtcatgtatgct
tgctctaaagttccagagcacaaaggaaaaaaaaaaaaaaccattatggt
gactcacgggtagggctaaaaccaactgaaaacatttttctatgattcaa
tattggatgtggagacaagaacagagcaaattatgtaaggctatgttggc
tctgctaagatttggactctttatcatccaaacaatggaaaaacaaatta
ttttacatatcatcatattttcatgttgaaaagattattacagctagaag
tgacaataaacccggaagccacatgactggatgtcagtgagccactggac
aaagaaatgaatcctagtttgtaaaaacatgaccactgtagagaaactgc
aattccacaagatattagacataaagcgtttactggataagactgaataa
aggatgaatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_56388943_56390143
seq2: B6Ng01-338P17.b_45_1240 (reverse)

seq1  GTATGAATAAGGAACAGACCTTTTATTGAAGATTTTCTCACCAATGAACA  50
      ||||||||| | ||| |  ||||||||||||||||  ||||||||| || 
seq2  GTATGAATAGGCAACCG-TCTTTTATTGAAGATTT--TCACCAATGGAC-  46

seq1  AATCAGCATCAGA-TGTAGAACTTGGGGAAGTGAATTGAGAATTCTGACT  99
      ||||||||||||| |||||| ||||||  |||||| ||||||||| ||| 
seq2  AATCAGCATCAGAGTGTAGACCTTGGG--AGTGAA-TGAGAATTCCGAC-  92

seq1  TCATCAATACGTTAAAGTATTGATAGAT-AATAAATGGATAGAATTGAAG  148
      ||||| ||||||| |||||||||||||| ||||||| ||||||| |||||
seq2  TCATC-ATACGTT-AAGTATTGATAGATAAATAAAT-GATAGAA-TGAAG  138

seq1  ATGAAGGATCTTTGGGAGCGTGCCAAACAAATGTT-AAAAGCCCTGTCTT  197
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGAAGGATCTTTGGGAGCGTGCCAAACAAATGTTAAAAAGCCCTGTCTT  188

seq1  GGGTTCGTTTTTTATTTGCCTTTTTCACAACTGTAATGAGATG-AACTTC  246
      ||||   |||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGTCGTTTTTTTATTTGCCTTTTTCACAACTGTAATGAGATGAAACTTC  238

seq1  TT-GGCTGTA-CCATGTGACTTTTTCATCATATATATTCTATTTCAGTAT  294
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTGTACCCATGTGACTTTTTCATCATATATATTCTATTTCAGTAT  288

seq1  GCT-CCCCCCACCCAAAAAAAAAGCAGAACCTAGTGAACATGTCTGAAAC  343
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCCCCACCCAAAAAAAAAGCAGAACCTAGTGAACATGTCTGAAAC  338

seq1  CTTTGAAGCTGGCAGCTAAAATAAACCTCTCCTCTCTTTAAAAATGCTTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGCTGGCAGCTAAAATAAACCTCTCCTCTCTTTAAAAATGCTTC  388

seq1  TCCAAACTCCGTGCCACAGGATGGGGAAATTCCCAAGGGGGCCACCCTAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTCCGTGCCACAGGATGGGGAAATTCCCAAGGGGGCCACCCTAT  438

seq1  TAGAGGTGAAGGAGAGTGGGGATGCAGGAAGAACTCTGATAGGGGGAATA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTGAAGGAGAGTGGGGATGCAGGAAGAACTCTGATAGGGGGAATA  488

seq1  AGGGGTTTAGAATGTTTGGATGTAAATAAATAAAATAATTAACAAAAAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTTAGAATGTTTGGATGTAAATAAATAAAATAATTAACAAAAAAA  538

seq1  TAAGAGGCTTCTCTACGATGCTCTTCATTGTGAGAAAATGCTAACACATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGCTTCTCTACGATGCTCTTCATTGTGAGAAAATGCTAACACATT  588

seq1  TATGTCACTATAACTACACACACCCCTTTCATTGTGATTAATCTGTGCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCACTATAACTACACACACCCCTTTCATTGTGATTAATCTGTGCTT  638

seq1  GTCTATTTTAAAAAGGAGTCATGGATGCCTCGGTATAAATGAGGATAGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTTTAAAAAGGAGTCATGGATGCCTCGGTATAAATGAGGATAGAG  688

seq1  TATTTATTACAATTTAATTCATCATGATCCAAATTTTCTAGATGTATTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTACAATTTAATTCATCATGATCCAAATTTTCTAGATGTATTTT  738

seq1  TCTTCTAAAACCTTCCCATAGTTCCTGCCACTGTAAAGATATTCAGGTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAAAACCTTCCCATAGTTCCTGCCACTGTAAAGATATTCAGGTTT  788

seq1  CCGAAGCCCAGCAAGAATTAGGAGATTCAGACAACTTATTCATGCTTTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGCCCAGCAAGAATTAGGAGATTCAGACAACTTATTCATGCTTTTT  838

seq1  GTTTCTTGTTTCTGACTTAGAAGTGTGCTTTTGGAACATTATAAATCCAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGTTTCTGACTTAGAAGTGTGCTTTTGGAACATTATAAATCCAC  888

seq1  ATCATTTTTTTTAATGAGAAAATACCACTATTAAAAGGCGTGCTGAATTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTTTTAATGAGAAAATACCACTATTAAAAGGCGTGCTGAATTG  938

seq1  GATGACTTTGGAAATCTTACATGCTATAAATAGTCCTTACAACAGGCAAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTTTGGAAATCTTACATGCTATAAATAGTCCTTACAACAGGCAAC  988

seq1  ATGGTGACTTAAAGAATGTGTGGATAGATATGTGGTATTGTACATTACTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGACTTAAAGAATGTGTGGATAGATATGTGGTATTGTACATTACTT  1038

seq1  AAATGATCATTTTGGAAATTTAGTCAATGATTAAATGCTTGGATGCATGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCATTTTGGAAATTTAGTCAATGATTAAATGCTTGGATGCATGA  1088

seq1  GTTATCTGACTGTACCTAGCCAGAAATTAATATTCCAGGAGCCATAAATT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTGACTGTACCTAGCCAGAAATTAATATTCCAGGAGCCATAAATT  1138

seq1  ATATTCATTTATATACTCACTTTCAGAGAATCTCTCCAATAATATCAGGA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTTATATACTCACTTTCAGAGAATCTCTCCAATAATATCAGGA  1188

seq1  AAGAATTC  1201
      ||||||||
seq2  AAGAATTC  1196


seq1: chr15_56271997_56273060
seq2: B6Ng01-338P17.g_71_1133

seq1  GAATTCTACTTTCAGAGAAAGCATTAGCCCCTTGAGAAGGCTGAAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTTCAGAGAAAGCATTAGCCCCTTGAGAAGGCTGAAAAATT  50

seq1  ATATTGTGACGTTTGTGTTTTAACTATTTTTAATGGTTCCAATTATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGACGTTTGTGTTTTAACTATTTTTAATGGTTCCAATTATCTTT  100

seq1  CTAAAATTTAGCTATGGCATATTATGAAAATAATTTCATCCAACTTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTTAGCTATGGCATATTATGAAAATAATTTCATCCAACTTTGCT  150

seq1  AAGGTATTTTATAATAAAAGTTCTTTCTAGAAAATTTTTCGTGCTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTTTATAATAAAAGTTCTTTCTAGAAAATTTTTCGTGCTGAAAA  200

seq1  AAACTTCAAAATAGATATTCATTTTATAATCTTACCTTGGTGTTATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAAAATAGATATTCATTTTATAATCTTACCTTGGTGTTATTTTA  250

seq1  TCCTTTATTCCCTATTATACTAAGTAATGTATGTAAGTTTTCAAGAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATTCCCTATTATACTAAGTAATGTATGTAAGTTTTCAAGAGGCA  300

seq1  CTGAATATCCTATACATTTTAAGCACTGAAGCAAAATTTTGAAAATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATCCTATACATTTTAAGCACTGAAGCAAAATTTTGAAAATAAAT  350

seq1  AAGTAGATTTGTTCTTTTTTTTTTTTTGCCTAAAAAGCCTTCTAATTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATTTGTTCTTTTTTTTTTTTTGCCTAAAAAGCCTTCTAATTCAG  400

seq1  ATATAATACAAACACAATATTATGAATATAAAATGGCCTTTTAAATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATACAAACACAATATTATGAATATAAAATGGCCTTTTAAATAAAG  450

seq1  TTGTGTATAGAAAGATTTGTAAACATCTAATTGGCAATTTTGATTTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATAGAAAGATTTGTAAACATCTAATTGGCAATTTTGATTTATTA  500

seq1  AAATAGACCTCCAAATTTTTGAACAATAGGGAATAACTGAGGGCAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACCTCCAAATTTTTGAACAATAGGGAATAACTGAGGGCAAACCT  550

seq1  CTAAAATGAAAATACCACTAGATAGAGAGGAGATATAGATGAGACACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGAAAATACCACTAGATAGAGAGGAGATATAGATGAGACACTGT  600

seq1  GGTGAATACATGCTAAAAGGCAGGAGGGGAAGTCACGGGTCATGTATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATACATGCTAAAAGGCAGGAGGGGAAGTCACGGGTCATGTATGCT  650

seq1  TGCTCTAAAGTTCCAGAGCACAAAGGAAAAAAAAAAAAAACCATTATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAAAGTTCCAGAGCACAAAGGAAAAAAAAAAAAAACCATTATGGT  700

seq1  GACTCACGGGTAGGGCTAAAACCAACTGAAAACATTTTTCTATGATTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACGGGTAGGGCTAAAACCAACTGAAAACATTTTTCTATGATTCAA  750

seq1  TATTGGATGTGGAGACAAGAACAGAGCAAATTATGTAAGGCTATGTTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATGTGGAGACAAGAACAGAGCAAATTATGTAAGGCTATGTTGGC  800

seq1  TCTGCTAAGATTTGGACTCTTTATCATCCAAACAATGGAAAAACAAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAAGATTTGGACTCTTTATCATCCAAACAATGGAAAAACAAATTA  850

seq1  TTTTACATATCATCATATTTTCATGTTGAAAAGATTATTACAGCTAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATATCATCATATTTTCATGTTGAAAAGATTATTACAGCTAGAAG  900

seq1  TGGACAATAAA-CCGGAAGCCACATGACTGGATGTCAGTGGAGCACTGGA  949
      | ||||||||| ||||||||||||||||||||||||||||   |||||||
seq2  T-GACAATAAACCCGGAAGCCACATGACTGGATGTCAGTGAGCCACTGGA  949

seq1  CAAAGAAATGGATCCTAGTTTGTAAAAACATGA-CACTGTTAGAGAAACT  998
      |||||||||| |||||||||||||||||||||| ||||| ||||||||||
seq2  CAAAGAAATGAATCCTAGTTTGTAAAAACATGACCACTG-TAGAGAAACT  998

seq1  GCAATT-CACAAGATATTAGGACATAAAGCGTTTACTTGATAAGACTGAT  1047
      |||||| |||||||||||| ||||||||||||||||| ||||||||||| 
seq2  GCAATTCCACAAGATATTA-GACATAAAGCGTTTACTGGATAAGACTGAA  1047

seq1  AAAAGGATTGAATGAAA  1064
       |||||| |||||||||
seq2  TAAAGGA-TGAATGAAA  1063


| Home | SequenceCutter | Blast | Download |