BAC Information

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BAC

Clone NameB6Ng01-339K13
Chromosome15 (Build37)
Map Location 20,192,516 - 20,297,597
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339K13.bB6Ng01-339K13.g
ACCGA123594GA123595
length1,0271,102
definitionB6Ng01-339K13.b B6Ng01-339K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,192,516 - 20,193,207)(20,296,495 - 20,297,597)
sequence
gaattccactgtatacaggatgaatgatccattccatatacagtcaccaa
acctagaaactgtagtggatgctaagaagtgcttgctgacaagagtctga
tatatctgcctcctgagaggctctgacagagcctgacaaatacagaggtg
gatgcttgcagccaaccattgtactgagcacagggtccccaattgaggaa
ttagagaaaagactgaaggagctaaaggggtttgccccagtaggaggagc
aacaatatcaaacaaccaatcccctacccccagagctcatggggactaaa
ccaccaaccaaagagtacacatggagggacccatgtctccacctgcatat
gtagcagaggatggccttgttggacatcaatgagaggagtggaccttgat
tctgtgaaggctttatgccccagtgtaggggattcaaccttctcccagcc
ttgagcaggctaaatggaccttaagtgtttgccaaatttggaccttaaag
ccccaggtggactaaatttcctacagaagtagactgcctactgaacttgc
tttacaatcaattcatctgaaacaaaggatgggcctgtgggctctcccta
tgtaaatgcagtgctaactattaaactttgaaccttgatcagaaaccttt
gttgtagtttcatctgtctcctgcccactgtcccttttcattttcagcct
ccctttcaggtacccagttcatccatggcactggacagctacaggggaat
gccaggactgggaagtaggagtggtgtgtggggaaacatcctcatataag
caggggaggcaggtgggataggggtttttctacaggaaaaaaaaaaaaaa
caaaacaggaaagtccttacatctagttatatatagagggtaaactaaat
tttcattgttgtcatggctccagctgcatatgtagcagagatggaccagt
cagtcatcaatgggagaaagccctaggtctgtgagctctatacctcattg
tatgggaatgtcctgggccagaattag

gaattcaattctcatgaacacagaagttctcagtttgattaccagaaaaa
ctgtaaaagtactccattccctttaagaaaagactgtactttatcaagcc
gccttctgcttggtgtctccttgattcattaccagaaatgtgtttttttc
ttgctgcaggtgcagggcttttgagagcagcacccatttagaaatgactg
tgtggaattaagacagggataagggtgaacagcaagcagataagttttcc
ccatctattaaagtatgagacagaggaacaatcagaccaaattaagattg
gcgtgcctagggagtctgaagatgacatctcagactgcaaataaattagt
caggttaaatggcatctcagatgggtagtttggaagtctggacattcaag
ctggcagagcaatggtgcagaaaaggttggagagcatggtgctcttacag
aggtggggaaggtaagagctggagctatggcaacattctcgctatgccac
agagatctgcagttaaaaactatttgttttctcctttgtaaattaagaca
gtttagcagggctatttttctttaaccatttttttttctctgtatatgaa
gcacagagttgggggaagaggagcaggaaaagaaccagatataccactaa
agggacccagatgttccatgatgcagaagttaaagataccatacaaaaga
caattaatttttccaactgtacagttaaacctggattctctgccaggcag
ctgaagttcttgaaatgtaattggactaggtccagcagagtggagctggc
tgtcttccctatctttaggaatcaaactagaaacttatacataaggtcaa
aagtcatgaacaaaacacacacagaaaatcatagaatgatgttcctgggt
aaaaggaaggcaaaaacaaaaaaggccttttcagatggtctctcccttct
tgcatgagatttaacagaggactgacatattgttaaacaaaacaaacaac
aaaaaaaaaagcagcttcagatgtctttcttctcagccatgatggccata
gaccacagcagaatccagaaatcagaatgagaaactagtacgtctccaga
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_20192516_20193207
seq2: B6Ng01-339K13.b_389_1074

seq1  CCTGCATATGTAGCAGAGGATGGCCTTGTTGGACATCAATGAGAGGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATATGTAGCAGAGGATGGCCTTGTTGGACATCAATGAGAGGAGTG  50

seq1  GACCTTGATTCTGTGAAGGCTTTATGCCCCAGTGTAGGGGATTCAACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGATTCTGTGAAGGCTTTATGCCCCAGTGTAGGGGATTCAACCTT  100

seq1  CTCCCAGCCTTGAGCAGGCTAAATGGACCTTAAGTGTTTGCCAAATTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCCTTGAGCAGGCTAAATGGACCTTAAGTGTTTGCCAAATTTGG  150

seq1  ACCTTAAAGCCCCAGGTGGACTAAATTTCCTACAGAAGTAGACTGCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAAGCCCCAGGTGGACTAAATTTCCTACAGAAGTAGACTGCCTAC  200

seq1  TGAACTTGCTTTACAATCAATTCATCTGAAACAAAGGATGGGCCTGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGCTTTACAATCAATTCATCTGAAACAAAGGATGGGCCTGTGGG  250

seq1  CTCTCCCTATGTAAATGCAGTGCTAACTATTAAACTTTGAACCTTGATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTATGTAAATGCAGTGCTAACTATTAAACTTTGAACCTTGATCA  300

seq1  GAAACCTTTGTTGTAGTTTCATCTGTCTCCTGCCCACTGTCCCTTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTTGTTGTAGTTTCATCTGTCTCCTGCCCACTGTCCCTTTTCAT  350

seq1  TTTCAGCCTCCCTTTCAGGTACCCAGTTCATCCATGGCACTGGACAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCCTCCCTTTCAGGTACCCAGTTCATCCATGGCACTGGACAGCTA  400

seq1  CAGGGGAATGCCAGGACTGGGAAGTAGGAGTGGGTGTGTGGGGAAACATC  450
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGGGGAATGCCAGGACTGGGAAGTAGGAGT-GGTGTGTGGGGAAACATC  449

seq1  CTCATATAAGCAGGGGAGGCAGGTGGGATAGGGGTTTTTCTACAGG-AAA  499
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCATATAAGCAGGGGAGGCAGGTGGGATAGGGGTTTTTCTACAGGAAAA  499

seq1  AAAAAAAAAACAAAACAGGAAAGTCCTTACATCTAGTTATATATAGAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACAAAACAGGAAAGTCCTTACATCTAGTTATATATAGAGGG  549

seq1  TAAACTAAATTTTCATTGTTGTCATGGCTCCAGCTGCATATGTAGCAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAACTAAATTTTCATTGTTGTCATGGCTCCAGCTGCATATGTAGCAGA-  598

seq1  GATGGACCAGTCAGTCATCAATGGGAGGAAAGGCCCTAGGTCCTGTGAAG  649
      |||||||||||||||||||||||||||  || ||||||||| ||||||  
seq2  GATGGACCAGTCAGTCATCAATGGGAG--AAAGCCCTAGGT-CTGTGA--  643

seq1  GCTCTATACCTCATTGTATGGGAATGT-CTGGGCCAGAAATTAG  692
      ||||||||||||||||||||||||||| ||||||||| ||||||
seq2  GCTCTATACCTCATTGTATGGGAATGTCCTGGGCCAG-AATTAG  686


seq1: chr15_20296495_20297597
seq2: B6Ng01-339K13.g_67_1168 (reverse)

seq1  CTTCTGGGAGAACGTACTAG-TTCTCA-TCTGATTTCT-GAATCTGCTGT  47
      ||||| |||| ||||||||| |||||| |||||||||| || ||||||||
seq2  CTTCT-GGAG-ACGTACTAGTTTCTCATTCTGATTTCTGGATTCTGCTGT  48

seq1  GGGTCTATGGGCATTCATTGCTGAGGAAGAAAGACCATCTGAAGCTGCTT  97
       ||||||||| || |||| ||||| ||||||||| |||||||||||||||
seq2  -GGTCTATGGCCA-TCATGGCTGA-GAAGAAAGA-CATCTGAAGCTGCTT  94

seq1  TTTTTTTTGTTTGTTTTGTTTTGTTTAACAATATGTCAGTCTTCTGTT-A  146
      |||||||||||   ||||||||||||||||||||||||||| |||||| |
seq2  TTTTTTTTGTT--GTTTGTTTTGTTTAACAATATGTCAGTCCTCTGTTAA  142

seq1  ATCTCATGCAAGGAGGGAGAGGCCATCTGAAAAGGCCTTTTT--GTTTTG  194
      |||||||||||| |||||||| ||||||||||||||||||||   |||||
seq2  ATCTCATGCAAGAAGGGAGAGACCATCTGAAAAGGCCTTTTTTGTTTTTG  192

seq1  CCTTCCTTTTA-CCAGGAACATCATTCTATGATTTTCTGTGTGTGTTTTG  243
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTTTACCCAGGAACATCATTCTATGATTTTCTGTGTGTGTTTTG  242

seq1  TTCATGACTTTTGACCTTATGTATAAGTTTCTAGTTTGATTCCTAAAGAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACTTTTGACCTTATGTATAAGTTTCTAGTTTGATTCCTAAAGAT  292

seq1  AGGGAAGACAGCCAGCTCCACTCTGCTGGACCTAGTCCAATTACATTTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGACAGCCAGCTCCACTCTGCTGGACCTAGTCCAATTACATTTCA  342

seq1  AGAACTTCAGCTGCCTGGCAGAGAATCCAGGTTTAACTGTACAGTTGGAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCAGCTGCCTGGCAGAGAATCCAGGTTTAACTGTACAGTTGGAA  392

seq1  AAATTAATTGTCTTTTGTATGGTATCTTTAACTTCTGCATCATGGAACAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTGTCTTTTGTATGGTATCTTTAACTTCTGCATCATGGAACAT  442

seq1  CTGGGTCCCTTTAGTGGTATATCTGGTTCTTTTCCTGCTCCTCTTCCCCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCCTTTAGTGGTATATCTGGTTCTTTTCCTGCTCCTCTTCCCCC  492

seq1  AACTCTGTGCTTCATATACAGAGAAAAAAAAATGGTTAAAGAAAAATAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTGCTTCATATACAGAGAAAAAAAAATGGTTAAAGAAAAATAGC  542

seq1  CCTGCTAAACTGTCTTAATTTACAAAGGAGAAAACAAATAGTTTTTAACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAAACTGTCTTAATTTACAAAGGAGAAAACAAATAGTTTTTAACT  592

seq1  GCAGATCTCTGTGGCATAGCGAGAATGTTGCCATAGCTCCAGCTCTTACC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTCTGTGGCATAGCGAGAATGTTGCCATAGCTCCAGCTCTTACC  642

seq1  TTCCCCACCTCTGTAAGAGCACCATGCTCTCCAACCTTTTCTGCACCATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACCTCTGTAAGAGCACCATGCTCTCCAACCTTTTCTGCACCATT  692

seq1  GCTCTGCCAGCTTGAATGTCCAGACTTCCAAACTACCCATCTGAGATGCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCAGCTTGAATGTCCAGACTTCCAAACTACCCATCTGAGATGCC  742

seq1  ATTTAACCTGACTAATTTATTTGCAGTCTGAGATGTCATCTTCAGACTCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACCTGACTAATTTATTTGCAGTCTGAGATGTCATCTTCAGACTCC  792

seq1  CTAGGCACGCCAATCTTAATTTGGTCTGATTGTTCCTCTGTCTCATACTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCACGCCAATCTTAATTTGGTCTGATTGTTCCTCTGTCTCATACTT  842

seq1  TAATAGATGGGGAAAACTTATCTGCTTGCTGTTCACCCTTATCCCTGTCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATGGGGAAAACTTATCTGCTTGCTGTTCACCCTTATCCCTGTCT  892

seq1  TAATTCCACACAGTCATTTCTAAATGGGTGCTGCTCTCAAAAGCCCTGCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCACACAGTCATTTCTAAATGGGTGCTGCTCTCAAAAGCCCTGCA  942

seq1  CCTGCAGCAAGAAAAAAACACATTTCTGGTAATGAATCAAGGAGACACCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCAAGAAAAAAACACATTTCTGGTAATGAATCAAGGAGACACCA  992

seq1  AGCAGAAGGCGGCTTGATAAAGTACAGTCTTTTCTTAAAGGGAATGGAGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGGCGGCTTGATAAAGTACAGTCTTTTCTTAAAGGGAATGGAGT  1042

seq1  ACTTTTACAGTTTTTCTGGTAATCAAACTGAGAACTTCTGTGTTCATGAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACAGTTTTTCTGGTAATCAAACTGAGAACTTCTGTGTTCATGAG  1092

seq1  AATTGAATTC  1103
      ||||||||||
seq2  AATTGAATTC  1102


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