BAC Information

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BAC

Clone NameB6Ng01-339L13
Chromosome15 (Build37)
Map Location 37,043,798 - 37,162,800
singlet/doubletdoublet
Overlap geneLOC670911, LOC667492, LOC100041288
Upstream geneRgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz, Zfp706
Downstream geneGrhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1, Odf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339L13.bB6Ng01-339L13.g
ACCGA123636GA123637
length9311,098
definitionB6Ng01-339L13.b B6Ng01-339L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,043,798 - 37,044,727)(37,161,716 - 37,162,800)
sequence
gaattcattgtttttaatagctgagtagtactccatgtgtaaaggtacca
cattttctgtatccattcctctgttgagcgacatctgggttctttccagc
ttctggctattataaataaggctgctatgaacatagtggagcacgggtcc
ttatttgatgtgcacaaattcactgtggcattttggccagcaggtggcga
tattgtgccacaggggatgaggcaaccggtgagatttttttttttttttt
tttttttgttaccgcctaaccaatttcaggagcagggccgatgtgtcagg
ccgcctgcttgtcacctttagatgttgggcagctctccctaggatctcag
caaggagtgggtcagttctggaatctgccttagggttggatgggcccacc
tgggcacagaagagcaggcactgtcagagttcccctttgcaaagacgggt
aactgaaaggtattaattaatactgttcgcttcgagcccctgagctgcca
ttttgactattgaaagtgcattcaaaactgtgacacagacagacgctaaa
agtgtcgtgactgagaggtggcatttctggcatatgtcaggccttgggaa
tcaatccccagtgttgcatgaaactggtgtggaggtaggagctggagata
tggctgcggggttaagagcgcttgctgctctttcgtaagatctggatctg
gtttccagcacctacatcagaggctcaaaactgcctgtaactccagttcc
agggtattgtctgtcttcttctgggcctccgggagggtcaagcacacaca
tgttgcacatatgcacacatgcaggcagcattcatacacgtagatacaaa
ttaaagaaaaacaataataaataggtgtgggagtatatgccttgtaatct
tatgtgctagagaggccaagggggggtggga
gaattctttcactaaagggtacaagcccgagggccgagctgcgcggtgat
tggctgcggtgctccctcaggtgagctgccattggcagaggcgcgctcag
gtaaggcccttctccaagtgcaggtcactcactgcgaagtttacctgagt
ggagcggtggcacgctggagactctgcgagctgacttctacccacttttg
gctttcttccctgactaggggcagggtagaggtgatgggagagacggagc
ggggagcgccactacagacactaggtaccgtgggtcaaaccgaaggacga
cagaatgctgaacccagaaatcaacaagccacccggaaccaaatggccag
ttcaccacctgccacttgacactcgcgggacgaaaactgtgtggcgggca
gaagagtcagggaactagagttacgctatgctgagtgggaaaggaacgga
ttgccgggtctcttgcgtaattgcattgttagcattcttatccacaacaa
actcttctcctgctctgatgcatagaagatagcaggtcgttttcagtttt
caactagtcgagcgacctttcctgaactggatctatgaagtgcggcgtgg
ctttaatggagaaaggagattcggttgaatagactcttaaggtggcccgg
gcgcacctcttgcatctctccgcagcctgggattcctgcgctgcggaaca
actactgcatctgttccataagcctgtcgcccgttgacatttctaggcaa
gcatcaacatttacattgtaattcaatagaagcagctactacaaaggctc
tttatccttgcagtttaatatggttgccaggggaacaacgcaagatgaaa
gtgacttgtttgtgtgggttctctttcttggttccggaacagtgcgaagt
aggcaaggtgttcattttattaatcggctgctacgagaattaaagttatt
ttgtggaggtctgacaggatcctagcctcataacatgagcgtgatgtaaa
tacaggagggtattgcaagctttgccacatttatgtcaagtcaacactga
gcactggaagctgttcagatttgaacacacctttctgtattaactttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_37043798_37044727
seq2: B6Ng01-339L13.b_48_978

seq1  GAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATGTGTAAAGGTACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATGTGTAAAGGTACCA  50

seq1  CATTTTCTGTATCCATTCCTCTGTTGAGCGACATCTGGGTTCTTTCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTGTATCCATTCCTCTGTTGAGCGACATCTGGGTTCTTTCCAGC  100

seq1  TTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCACGGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCACGGGTCC  150

seq1  TTATTTGATGTGCACAAATTCACTGTGGCATTTTGGCCAGCAGGTGGCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGATGTGCACAAATTCACTGTGGCATTTTGGCCAGCAGGTGGCGA  200

seq1  TATTGTGCCACAGGGGATGAGGCAACCGGTGAGATTTTTTTTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGCCACAGGGGATGAGGCAACCGGTGAGATTTTTTTTTTTTTTTT  250

seq1  TTTTTTTGTTACCGCCTAACCAATTTCAGGAGCAGGGCCGATGTGTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTACCGCCTAACCAATTTCAGGAGCAGGGCCGATGTGTCAGG  300

seq1  CCGCCTGCTTGTCACCTTTAGATGTTGGGCAGCTCTCCCTAGGATCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGCTTGTCACCTTTAGATGTTGGGCAGCTCTCCCTAGGATCTCAG  350

seq1  CAAGGAGTGGGTCAGTTCTGGAATCTGCCTTAGGGTTGGATGGGCCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGTGGGTCAGTTCTGGAATCTGCCTTAGGGTTGGATGGGCCCACC  400

seq1  TGGGCACAGAAGAGCAGGCACTGTCAGAGTTCCCCTTTGCAAAGACGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAGAAGAGCAGGCACTGTCAGAGTTCCCCTTTGCAAAGACGGGT  450

seq1  AACTGAAAGGTATTAATTAATACTGTTCGCTTCGAGCCCCTGAGCTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAGGTATTAATTAATACTGTTCGCTTCGAGCCCCTGAGCTGCCA  500

seq1  TTTTGACTATTGAAAGTGCATTCAAAACTGTGACACAGACAGACGCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTATTGAAAGTGCATTCAAAACTGTGACACAGACAGACGCTAAA  550

seq1  AGTGTCGTGACTGAGAGGTGGCATTTCTGGCATATGTCAGGCCTTGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCGTGACTGAGAGGTGGCATTTCTGGCATATGTCAGGCCTTGGGAA  600

seq1  TCAATCCCCAGTGTTGCATGAAACTGGTGTGGAGGTAGGAGCTGGAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCCCAGTGTTGCATGAAACTGGTGTGGAGGTAGGAGCTGGAGATA  650

seq1  TGGCTGCGGGGTTAAGAGCGCTTGCTGCTCTTCCGTAAGATCTGGATCTG  700
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGCTGCGGGGTTAAGAGCGCTTGCTGCTCTTTCGTAAGATCTGGATCTG  700

seq1  GTTTCCAGCACCTACATCAGGAGGCTCAAAACTGCCTGTAACTCCAGTTC  750
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTTCCAGCACCTACATCA-GAGGCTCAAAACTGCCTGTAACTCCAGTTC  749

seq1  CAGGGTATTGTCTGTCTTCTTCT-GGCCTCCGGGAGGGTCAAGCACACAC  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGGGTATTGTCTGTCTTCTTCTGGGCCTCCGGGAGGGTCAAGCACACAC  799

seq1  ATGTTGCACATATGCACACATGCAGGCAAGCATTCATACACGTAAGATAC  849
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  ATGTTGCACATATGCACACATGCAGGC-AGCATTCATACACGT-AGATAC  847

seq1  AAATTAAAGAAAAA-ATAAATAAATAGGTGT-GGAGTATATGCCTGTAAA  897
      |||||||||||||| |  ||||||||||||| |||||||||||||   ||
seq2  AAATTAAAGAAAAACAATAATAAATAGGTGTGGGAGTATATGCCTTGTAA  897

seq1  TCT--AGTGCTTAGAGAGGGCAAGGGGGGGTGGGA  930
      |||   |||| |||||||| |||||||||||||||
seq2  TCTTATGTGC-TAGAGAGGCCAAGGGGGGGTGGGA  931

seq1: chr15_37161716_37162800
seq2: B6Ng01-339L13.g_70_1167 (reverse)

seq1  CAAAGGTTTAATACAG-AAGTTGTG-TCAAATCTG-ACAGC-TCCAGTGC  46
      |||||  ||||||||| ||| |||| ||||||||| ||||| ||||||||
seq2  CAAAG--TTAATACAGAAAGGTGTGTTCAAATCTGAACAGCTTCCAGTGC  48

seq1  TCCAGTGTTGACTTGACATAAATGTGGCAAAGCTTTCCATACCCTCCTGT  96
      | ||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  T-CAGTGTTGACTTGACATAAATGTGGCAAAGCTTGCAATACCCTCCTGT  97

seq1  ATTTCCACCACGCTCATG-TATG-GGCTAGATCCCTGTCAGAACTCCCAC  144
      |||| || |||||||||| |||| ||||||   ||||||||| ||||   
seq2  ATTTACATCACGCTCATGTTATGAGGCTAGGATCCTGTCAGACCTCCACA  147

seq1  AAATA--CTTAATTCTCGTAGCAG-CGATTA--TAAATG-ACACC-TGGC  187
      |||||   |||||||||||||||| ||||||   ||||| ||||| || |
seq2  AAATAACTTTAATTCTCGTAGCAGCCGATTAATAAAATGAACACCTTGCC  197

seq1  TACTTCGCACTGTTCCGG-ACCA--GAAGAGAACCCACACAAACAAGTCA  234
      |||||||||||||||||| ||||   ||||||||||||||||||||||||
seq2  TACTTCGCACTGTTCCGGAACCAAGAAAGAGAACCCACACAAACAAGTCA  247

seq1  CTTTCATCCTGCGTTGTTCCCCTGGCAACCATATTAAACTGCAAGGATAA  284
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCTTGCGTTGTTCCCCTGGCAACCATATTAAACTGCAAGGATAA  297

seq1  AGAGCCTTTGTAGTAGCTGCTTCTATTGAATTACAATGTAAATGTTGATG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTTGTAGTAGCTGCTTCTATTGAATTACAATGTAAATGTTGATG  347

seq1  CTTGCCTAGAAATGTCAACGGGCGACAGGCTTATGGAACAGATGCAGTAG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTAGAAATGTCAACGGGCGACAGGCTTATGGAACAGATGCAGTAG  397

seq1  TTGTTCCGCAGCGCAGGAATCCCAGGCTGCGGAGAGATGCAAGAGGTGCG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCGCAGCGCAGGAATCCCAGGCTGCGGAGAGATGCAAGAGGTGCG  447

seq1  CCCGGGCCACCTTAAGAGTCTATTCAACCGAATCTCCTTTCTCCATTAAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGCCACCTTAAGAGTCTATTCAACCGAATCTCCTTTCTCCATTAAA  497

seq1  GCCACGCCGCACTTCATAGATCCAGTTCAGGAAAGGTCGCTCGACTAGTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGCCGCACTTCATAGATCCAGTTCAGGAAAGGTCGCTCGACTAGTT  547

seq1  GAAAACTGAAAACGACCTGCTATCTTCTATGCATCAGAGCAGGAGAAGAG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGAAAACGACCTGCTATCTTCTATGCATCAGAGCAGGAGAAGAG  597

seq1  TTTGTTGTGGATAAGAATGCTAACAATGCAATTACGCAAGAGACCCGGCA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTGGATAAGAATGCTAACAATGCAATTACGCAAGAGACCCGGCA  647

seq1  ATCCGTTCCTTTCCCACTCAGCATAGCGTAACTCTAGTTCCCTGACTCTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTTCCTTTCCCACTCAGCATAGCGTAACTCTAGTTCCCTGACTCTT  697

seq1  CTGCCCGCCACACAGTTTTCGTCCCGCGAGTGTCAAGTGGCAGGTGGTGA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCGCCACACAGTTTTCGTCCCGCGAGTGTCAAGTGGCAGGTGGTGA  747

seq1  ACTGGCCATTTGGTTCCGGGTGGCTTGTTGATTTCTGGGTTCAGCATTCT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCATTTGGTTCCGGGTGGCTTGTTGATTTCTGGGTTCAGCATTCT  797

seq1  GTCGTCCTTCGGTTTGACCCACGGTACCTAGTGTCTGTAGTGGCGCTCCC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCCTTCGGTTTGACCCACGGTACCTAGTGTCTGTAGTGGCGCTCCC  847

seq1  CGCTCCGTCTCTCCCATCACCTCTACCCTGCCCCTAGTCAGGGAAGAAAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCGTCTCTCCCATCACCTCTACCCTGCCCCTAGTCAGGGAAGAAAG  897

seq1  CCAAAAGTGGGTAGAAGTCAGCTCGCAGAGTCTCCAGCGTGCCACCGCTC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGTGGGTAGAAGTCAGCTCGCAGAGTCTCCAGCGTGCCACCGCTC  947

seq1  CACTCAGGTAAACTTCGCAGTGAGTGACCTGCACTTGGAGAAGGGCCTTA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGTAAACTTCGCAGTGAGTGACCTGCACTTGGAGAAGGGCCTTA  997

seq1  CCTGAGCGCGCCTCTGCCAATGGCAGCTCACCTGAGGGAGCACCGCAGCC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCGCGCCTCTGCCAATGGCAGCTCACCTGAGGGAGCACCGCAGCC  1047

seq1  AATCACCGCGCAGCTCGGCCCTCGGGCTTGTACCCTTTAGTGAAAGAATT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCGCGCAGCTCGGCCCTCGGGCTTGTACCCTTTAGTGAAAGAATT  1097

seq1  C  1085
      |
seq2  C  1098