BAC Information

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BAC

Clone NameB6Ng01-340A08
Chromosome15 (Build37)
Map Location 15,998,026 - 16,111,741
singlet/doubletdoublet
Overlap geneLOC100040087
Upstream geneLOC100040033, LOC100040046, EG239341
Downstream geneLOC624183, LOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340A08.bB6Ng01-340A08.g
ACCGA123853GA123854
length9161,109
definitionB6Ng01-340A08.b B6Ng01-340A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,998,026 - 15,998,941)(16,110,694 - 16,111,741)
sequence
gaattctttctgactcagtgagattttgcagatagttaaagctgattcaa
ggaaataaaactcaagaaaatcctcatcatatttccttgatgagaaagac
atggagtgcaaaaatatcagccatgtgtgttaccctgtctttccttcaca
tttaggcacttaattgtccctcacctgtttccattatttatattatactt
aaaattttatcccagttgataaaattccttatgtctttagaagaagttgg
atataatgagtgtcataatccaacttgttttatatattcaagtagcaagt
tgagaactaaccctacaataaaatttgaatgtgaatatagaaatgattga
gttgcccagacaactattgtgttaaagcatttcttgcatagttaggtttg
ctagagaaaaatgcccaatatgaagtttaatcttagtattggtgtgtgga
aacactacctacatacttcacagaatcataacagaatcagagatttattt
ccattatccccactatttattttaatacaatttactatgaagcaatatgc
tgtgctttaaacatcttttaaaataaatccagcatgcacatatgatatac
acaaacatgtgtataacaaatgtactttattaaaacaataaagaaatcta
aagtatgcagtactcattttttaaaatatgaattagtaatgatctaattg
aaaataatgtgcataaaattattatcaatggtattctcattttacctaac
cctaacaaaaataaaagtaactacagtatttaaattctccctgaaataca
ggttatcattctctctagggagcacaccaccatataattttgtaagatgt
gctagttagagaaaatagaatattgatctgaatttagcactctttctaac
tatagtaatctgggta

gaattcacgcagttgaatctttctcaacagtctgttttacgagaacactt
cattaccgtgacccgcagttctggttccggaatgagggatcttccttgcg
ccggtgatggtaaactctcgtcccgagtttttcttcccgggtttcctctt
cccggattttctcgtcccggaatttctcgtcccggaattcggcaccaact
cttattcgcgttcgcgcgcccggccaggaaagaacacaacaaaccagaat
cttctgcggcaaaactttattgcttacatctttaggagccaggagcgcaa
acccccagccccaaaagcgaaagccaccccaataacaaaaccgaaaaccc
ttccctatttaagagagttatatttcgcctaggacgcatcactccctgat
tggctgcagcccatggccgagctgacgttcacgggaaaggcagagtacaa
gtagtcgtaaaatacccttggcacatgcgcagattatttgtttaccactt
agaacacaggatgtcagcgccatcttgtgacggcgaatgtgggggcggct
cccaacactcttggaatagtctgaaccagtactaattacatatagtacta
atgaattaggcattataagtgtcatcgaaaagccagtgtgttgtttgaaa
ataggcctttgatcatgagagtatttcagagttaacctaacaacatgtat
gcatattttccaagcagaaatatattcttaactatttgtcatggctaaag
tttgactacatgtcttcacaaatgaaggtacaataatgaacatgtttgaa
aacagttttgtgttagtgtctgcaccagaaattattatgagcttgacaaa
agagaaaagcacatttcttaataaaaattacaagggcaggaagtgatggt
ggcttcaaagaatcagcatacccttggatctgaagatggtctcagactat
gtggaacacagatgggcctagtctccagttgagctgaggtctaaaacctg
gtaggacccgtggttgagaattcctattctacatggggaagtagtcattc
cctcatgttctctggatttaaaggcttctgtgtgaagttactgccacaca
gaaccctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_15998026_15998941
seq2: B6Ng01-340A08.b_48_963

seq1  GAATTCTTTCTGACTCAGTGAGATTTTGCAGATAGTTAAAGCTGATTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGACTCAGTGAGATTTTGCAGATAGTTAAAGCTGATTCAA  50

seq1  GGAAATAAAACTCAAGAAAATCCTCATCATATTTCCTTGATGAGAAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAAACTCAAGAAAATCCTCATCATATTTCCTTGATGAGAAAGAC  100

seq1  ATGGAGTGCAAAAATATCAGCCATGTGTGTTACCCTGTCTTTCCTTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGCAAAAATATCAGCCATGTGTGTTACCCTGTCTTTCCTTCACA  150

seq1  TTTAGGCACTTAATTGTCCCTCACCTGTTTCCATTATTTATATTATACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCACTTAATTGTCCCTCACCTGTTTCCATTATTTATATTATACTT  200

seq1  AAAATTTTATCCCAGTTGATAAAATTCCTTATGTCTTTAGAAGAAGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTATCCCAGTTGATAAAATTCCTTATGTCTTTAGAAGAAGTTGG  250

seq1  ATATAATGAGTGTCATAATCCAACTTGTTTTATATATTCAAGTAGCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGAGTGTCATAATCCAACTTGTTTTATATATTCAAGTAGCAAGT  300

seq1  TGAGAACTAACCCTACAATAAAATTTGAATGTGAATATAGAAATGATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTAACCCTACAATAAAATTTGAATGTGAATATAGAAATGATTGA  350

seq1  GTTGCCCAGACAACTATTGTGTTAAAGCATTTCTTGCATAGTTAGGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCAGACAACTATTGTGTTAAAGCATTTCTTGCATAGTTAGGTTTG  400

seq1  CTAGAGAAAAATGCCCAATATGAAGTTTAATCTTAGTATTGGTGTGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAAATGCCCAATATGAAGTTTAATCTTAGTATTGGTGTGTGGA  450

seq1  AACACTACCTACATACTTCACAGAATCATAACAGAATCAGAGATTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTACCTACATACTTCACAGAATCATAACAGAATCAGAGATTTATTT  500

seq1  CCATTATCCCCACTATTTATTTTAATACAATTTACTATGAAGCAATATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATCCCCACTATTTATTTTAATACAATTTACTATGAAGCAATATGC  550

seq1  TGTGCTTTAAACATCTTTTAAAATAAATCCAGCATGCACATATGATATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTAAACATCTTTTAAAATAAATCCAGCATGCACATATGATATAC  600

seq1  ACAAACATGTGTATAACAAATGTACTTTATTAAAACAATAAAGAAATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATGTGTATAACAAATGTACTTTATTAAAACAATAAAGAAATCTA  650

seq1  AAGTATGCAGTACTCATTTTTTAAAATATGAATTAGTAATGATCTAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGCAGTACTCATTTTTTAAAATATGAATTAGTAATGATCTAATTG  700

seq1  AAAATAATGTGCATAAAATTATTATCAATGGTATTCTCATTTTACCTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGTGCATAAAATTATTATCAATGGTATTCTCATTTTACCTAAC  750

seq1  CCTAACAAAAATAAAAGTAACTACAGTATTTAAATTCTCCCTGAAATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAAAAATAAAAGTAACTACAGTATTTAAATTCTCCCTGAAATACA  800

seq1  GGTTATCATTCTCTCTAGGGAGCACACCACCATATAATTTTGTAAGATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCATTCTCTCTAGGGAGCACACCACCATATAATTTTGTAAGATGT  850

seq1  GCTAGTTAGAGAAAATAGAATATTGATCTGAATTTAGCACTCTTTCTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTAGAGAAAATAGAATATTGATCTGAATTTAGCACTCTTTCTAAC  900

seq1  TATAGTAATCTGGGTA  916
      ||||||||||||||||
seq2  TATAGTAATCTGGGTA  916


seq1: chr15_16110694_16111741
seq2: B6Ng01-340A08.g_124_1174 (reverse)

seq1  TGAGG--TCTGTGTGGGCAGTAACTTC-CACAGGAGCC-TTAAATCCAGG  46
      |||||  ||||||| |||||||||||| ||||| |||| |||||||||| 
seq2  TGAGGGTTCTGTGT-GGCAGTAACTTCACACAGAAGCCTTTAAATCCAGA  49

seq1  AGACATGAGGGAATGACTAACTTCCCATGTAG-ATAGGAATTCTCACCAC  95
        |||||||||||||||||  | ||||||||| ||||||||||||| |  
seq2  GAACATGAGGGAATGACTACTTCCCCATGTAGAATAGGAATTCTCAACCA  99

seq1  CGGGTCCTACCAGGTTTTAGACCTCAGCTCAACTGGAGACTAGG-CCATC  144
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CGGGTCCTACCAGGTTTTAGACCTCAGCTCAACTGGAGACTAGGCCCATC  149

seq1  TGTTGTTCCACATAGTCTGAGACCATCTTCAGATCCAAGGGTATGCTGAT  194
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TGTTCCACATAGTCTGAGACCATCTTCAGATCCAAGGGTATGCTGAT  198

seq1  TCTTTGAAGCCACCATCACTTCCTGCCCCTTGTAATTTTTATTAAGAAAT  244
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTTTGAAGCCACCATCACTTCCTG-CCCTTGTAATTTTTATTAAGAAAT  247

seq1  GTGCTTTTCTCTTTTGTCAAGCTCATAATAATTTCTGGTGCAGACACTAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTCTCTTTTGTCAAGCTCATAATAATTTCTGGTGCAGACACTAA  297

seq1  CACAAAACTGTTTTCAAACATGTTCATTATTGTACCTTCATTTGTGAAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACTGTTTTCAAACATGTTCATTATTGTACCTTCATTTGTGAAGA  347

seq1  CATGTAGTCAAACTTTAGCCATGACAAATAGTTAAGAATATATTTCTGCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTCAAACTTTAGCCATGACAAATAGTTAAGAATATATTTCTGCT  397

seq1  TGGAAAATATGCATACATGTTGTTAGGTTAACTCTGAAATACTCTCATGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATATGCATACATGTTGTTAGGTTAACTCTGAAATACTCTCATGA  447

seq1  TCAAAGGCCTATTTTCAAACAACACACTGGCTTTTCGATGACACTTATAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCCTATTTTCAAACAACACACTGGCTTTTCGATGACACTTATAA  497

seq1  TGCCTAATTCATTAGTACTATATGTAATTAGTACTGGTTCAGACTATTCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAATTCATTAGTACTATATGTAATTAGTACTGGTTCAGACTATTCC  547

seq1  AAGAGTGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGAC  597

seq1  ATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTA  647

seq1  TTTTACGACTACTTGTACTCTGCCTTTCCCGTGAACGTCAGCTCGGCCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACGACTACTTGTACTCTGCCTTTCCCGTGAACGTCAGCTCGGCCAT  697

seq1  GGGCTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAATATAACTCTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAATATAACTCTC  747

seq1  TTAAATAGGGAAGGGTTTTCGGTTTTGTTATTGGGGTGGCTTTCGCTTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGGGAAGGGTTTTCGGTTTTGTTATTGGGGTGGCTTTCGCTTTT  797

seq1  GGGGCTGGGGGTTTGCGCTCCTGGCTCCTAAAGATGTAAGCAATAAAGTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGGGGTTTGCGCTCCTGGCTCCTAAAGATGTAAGCAATAAAGTT  847

seq1  TTGCCGCAGAAGATTCTGGTTTGTTGTGTTCTTTCCTGGCCGGGCGCGCG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGCAGAAGATTCTGGTTTGTTGTGTTCTTTCCTGGCCGGGCGCGCG  897

seq1  AACGCGAATAAGAGTTGGTGCCGAATTCCGGGACGAGAAATTCCGGGACG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCGAATAAGAGTTGGTGCCGAATTCCGGGACGAGAAATTCCGGGACG  947

seq1  AGAAAATCCGGGAAGAGGAAACCCGGGAAGAAAAACTCGGGACGAGAGTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCCGGGAAGAGGAAACCCGGGAAGAAAAACTCGGGACGAGAGTT  997

seq1  TACCATCACCGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAACTGCGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCACCGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAACTGCGG  1047

seq1  GTCA  1048
      ||||
seq2  GTCA  1051


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