BAC Information

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BAC

Clone NameB6Ng01-340J03
Chromosome15 (Build37)
Map Location 72,575,506 - 72,724,077
singlet/doubletdoublet
Overlap gene1810044A24Rik, Peg13
Upstream geneLOC100040847, Col22a1, Kcnk9, LOC665621
Downstream geneLOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340J03.bB6Ng01-340J03.g
ACCGA124229GA124230
length1,100979
definitionB6Ng01-340J03.b B6Ng01-340J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,722,975 - 72,724,077)(72,575,506 - 72,576,363)
sequence
tgctccccagctcttagcgtctttacagacacacggatttttgttgactc
agcattttgatccatttacagtcgctattgtcattgctcaaattgtcaca
gtttggccagagggaccttgtgttgagctgcctccaggcccttttgtcat
ggctgttaatcttcagaggctcagtgctctgacaataaaaggagctgttc
tcagctcccaacgacctgaggtcagcttctttgttcaggatggggaactg
aggctgggaacatggctgcattgtgatagctaatatagttaatcttgctg
gtcaggggcatcatggtgcagaggacctgggctcatctaatgccatagcc
tttacatgtgcctgcatgggttgtcctcttcttcctatgccttctcttcc
ctgccacacctgacctgttcatctgtgagtgaagcgtatgacaccttccc
tcctttgtcactaagttctggtgtaggcgctgttgtcgtatttgtgtcca
tttctggggggttcttcacagagtgaggtgctatcctgtccctcggtccc
agggtatcattctttttcatattttccccatttgataaactcaagggtgt
aatattgacttagtgagtaggagtcactgtgtaagaatgttgccagcacc
ggagtgactcagtagaggtatgactgtgcttttaaatttaatatcaagac
ctgccgcctgacaaaacatataaatgacagtgagataaaatatttgaaat
gagaactgccctggagaggtgaagctattgtgtggcagtgtgcacagtgg
gcacagtagaacgcaagcaaggaggtacgcttttctgcaaaatttaaaat
aaaatttataaaacatcaaatgagtttttttttaacctgagatatccctg
ggaaaattccaaaacttgctctcctccttcttaaaaaacaaaattaaaaa
gtgctcaccgaaacagacaagaatgttagttagtgcttagcaggagtata
aattagatggcctctcagagctctagtgatctagagtagaggtctcagct
ttctcatgctgacctttgaacgttccttcatgtttggggtgacaccagcc

gaattcaccatgtctttatttttaacagctaaatagtattccattgtgca
gatgtaccacattgtctttatccatccttcagttgagggatgtctaggtt
atttccagttcctggctactatgaataaagctgctatgaacatagttgag
caggtgtctttgtggtatagtgcggcatctttttgggtatatgcccagga
gtggtatagctggatcttgaggtagaactattcccagttttctaagaaac
caccaaattgatttccaacgtgtttgtacaagtttgtactccaaccagca
atggaggagtgttccccttactccatatcctcaccagcatgtgctatctc
ttaagttttggatcttagccattctagtgggtataatatggaacttcaga
gttgtttgatttatatttccctgatgactaagactcatgtctttaagtgc
ttcttggatatttgagattcctttgttgagattctctgtttaactttgta
ccccatttttaaattgggttatttgggttgttggtgtctaacttcttgcg
ttttttaataaattctgaatattagccctctgtcgaatgtaatgctggcg
aagagtctttgtcagtctataattttatgataaactttaaaggaaaaata
aaaagagtgagaaatgacacaaagaggaccaaagtcactgttaggttagg
gtgaagacaccacagagttccaatcccaccagtgtgacaacccagaggac
acagggcgcagactgacaaaattaatccaagaaaaagtaaattgatctaa
aaagtcctcaacccgttaaatcaatcaaatagattctctcttaaaatcct
ctcaaaaatctctaggttaggattctttcctgacaaattctacaaatggt
cttattttattttattttttaagttcctcaataataatactgtgagattt
tcctccagaaaagaactggaacgatgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_72722975_72724077
seq2: B6Ng01-340J03.b_56_1155 (reverse)

seq1  GGCTGGTGGTCACCAC-AACATG-AGGAACTGTCAAAGGGTCAGCATGAG  48
      ||||||| |||||| | |||||| ||||||  ||||| ||||||||||| 
seq2  GGCTGGT-GTCACCCCAAACATGAAGGAACGTTCAAA-GGTCAGCATGA-  47

seq1  GAAGGCTGAGGACCTCTACTCTAGATCACTAGAGCTCTTGAGAGGCCATT  98
      ||| ||||| ||||||||||||||||||||||||||| |||||||||| |
seq2  GAAAGCTGA-GACCTCTACTCTAGATCACTAGAGCTC-TGAGAGGCCA-T  94

seq1  CTTATTTATACCTCCTTGCTAAGCACT-ACTAACATTCTTGTCTGTTTCG  147
      || ||||||| |||| ||||||||||| ||||||||||||||||||||||
seq2  CTAATTTATA-CTCC-TGCTAAGCACTAACTAACATTCTTGTCTGTTTCG  142

seq1  GTGAGCACTTTTT-ATTTTGTTTTTTAAGAAGGAGGAGAGCAAGTTTTGG  196
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGAGCACTTTTTAATTTTGTTTTTTAAGAAGGAGGAGAGCAAGTTTTGG  192

seq1  AATTTT-CCAGGAATATCTCAGGTT-AAAAAAAACTCATTTGATGTTTTA  244
      |||||| ||||| |||||||||||| ||||||||||||||||||||||||
seq2  AATTTTCCCAGGGATATCTCAGGTTAAAAAAAAACTCATTTGATGTTTTA  242

seq1  TAAATTTTATTTTAAATTTTTGCAGAAAAGCGTACCTCCTTGCTTGCGTT  294
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAATTTTATTTTAAA-TTTTGCAGAAAAGCGTACCTCCTTGCTTGCGTT  291

seq1  CTACTGTGCCCACTGTGCACACTGCCACACAATAGCTTCACCTCTCCAGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGCCCACTGTGCACACTGCCACACAATAGCTTCACCTCTCCAGG  341

seq1  GCAGTTCTCATTTCAAATATTTTATCTCACTGTCATTTATATGTTTTGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTCATTTCAAATATTTTATCTCACTGTCATTTATATGTTTTGTC  391

seq1  AGGCGGCAGGTCTTGATATTAAATTTAAAAGCACAGTCATACCTCTACTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGCAGGTCTTGATATTAAATTTAAAAGCACAGTCATACCTCTACTG  441

seq1  AGTCACTCCGGTGCTGGCAACATTCTTACACAGTGACTCCTACTCACTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCCGGTGCTGGCAACATTCTTACACAGTGACTCCTACTCACTAA  491

seq1  GTCAATATTACACCCTTGAGTTTATCAAATGGGGAAAATATGAAAAAGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATATTACACCCTTGAGTTTATCAAATGGGGAAAATATGAAAAAGAA  541

seq1  TGATACCCTGGGACCGAGGGACAGGATAGCACCTCACTCTGTGAAGAACC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCCTGGGACCGAGGGACAGGATAGCACCTCACTCTGTGAAGAACC  591

seq1  CCCCAGAAATGGACACAAATACGACAACAGCGCCTACACCAGAACTTAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAAATGGACACAAATACGACAACAGCGCCTACACCAGAACTTAGT  641

seq1  GACAAAGGAGGGAAGGTGTCATACGCTTCACTCACAGATGAACAGGTCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGAGGGAAGGTGTCATACGCTTCACTCACAGATGAACAGGTCAG  691

seq1  GTGTGGCAGGGAAGAGAAGGCATAGGAAGAAGAGGACAACCCATGCAGGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCAGGGAAGAGAAGGCATAGGAAGAAGAGGACAACCCATGCAGGC  741

seq1  ACATGTAAAGGCTATGGCATTAGATGAGCCCAGGTCCTCTGCACCATGAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAAGGCTATGGCATTAGATGAGCCCAGGTCCTCTGCACCATGAT  791

seq1  GCCCCTGACCAGCAAGATTAACTATATTAGCTATCACAATGCAGCCATGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGACCAGCAAGATTAACTATATTAGCTATCACAATGCAGCCATGT  841

seq1  TCCCAGCCTCAGTTCCCCATCCTGAACAAAGAAGCTGACCTCAGGTCGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCTCAGTTCCCCATCCTGAACAAAGAAGCTGACCTCAGGTCGTT  891

seq1  GGGAGCTGAGAACAGCTCCTTTTATTGTCAGAGCACTGAGCCTCTGAAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTGAGAACAGCTCCTTTTATTGTCAGAGCACTGAGCCTCTGAAGA  941

seq1  TTAACAGCCATGACAAAAGGGCCTGGAGGCAGCTCAACACAAGGTCCCTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCCATGACAAAAGGGCCTGGAGGCAGCTCAACACAAGGTCCCTC  991

seq1  TGGCCAAACTGTGACAATTTGAGCAATGACAATAGCGACTGTAAATGGAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAACTGTGACAATTTGAGCAATGACAATAGCGACTGTAAATGGAT  1041

seq1  CAAAATGCTGAGTCAACAAAAATCCGTGTGTCTGTAAAGACGCTAAGAGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCTGAGTCAACAAAAATCCGTGTGTCTGTAAAGACGCTAAGAGC  1091

seq1  TGGGGAGCA  1103
      |||||||||
seq2  TGGGGAGCA  1100

seq1: chr15_72575506_72576363
seq2: B6Ng01-340J03.g_189_1046

seq1  TGAATAAAGCTGCTATGAACATAGTTGAGCAGGTGTCTTTGTGGTATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAGCTGCTATGAACATAGTTGAGCAGGTGTCTTTGTGGTATAGT  50

seq1  GCGGCATCTTTTTGGGTATATGCCCAGGAGTGGTATAGCTGGATCTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCATCTTTTTGGGTATATGCCCAGGAGTGGTATAGCTGGATCTTGAG  100

seq1  GTAGAACTATTCCCAGTTTTCTAAGAAACCACCAAATTGATTTCCAACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACTATTCCCAGTTTTCTAAGAAACCACCAAATTGATTTCCAACGT  150

seq1  GTTTGTACAAGTTTGTACTCCAACCAGCAATGGAGGAGTGTTCCCCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACAAGTTTGTACTCCAACCAGCAATGGAGGAGTGTTCCCCTTAC  200

seq1  TCCATATCCTCACCAGCATGTGCTATCTCTTAAGTTTTGGATCTTAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATCCTCACCAGCATGTGCTATCTCTTAAGTTTTGGATCTTAGCCA  250

seq1  TTCTAGTGGGTATAATATGGAACTTCAGAGTTGTTTGATTTATATTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGGGTATAATATGGAACTTCAGAGTTGTTTGATTTATATTTCCC  300

seq1  TGATGACTAAGACTCATGTCTTTAAGTGCTTCTTGGATATTTGAGATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTAAGACTCATGTCTTTAAGTGCTTCTTGGATATTTGAGATTCC  350

seq1  TTTGTTGAGATTCTCTGTTTAACTTTGTACCCCATTTTTAAATTGGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAGATTCTCTGTTTAACTTTGTACCCCATTTTTAAATTGGGTTA  400

seq1  TTTGGGTTGTTGGTGTCTAACTTCTTGCGTTTTTTAATAAATTCTGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTGTTGGTGTCTAACTTCTTGCGTTTTTTAATAAATTCTGAATA  450

seq1  TTAGCCCTCTGTCGAATGTAATGCTGGCGAAGAGTCTTTGTCAGTCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCTCTGTCGAATGTAATGCTGGCGAAGAGTCTTTGTCAGTCTATA  500

seq1  ATTTTATGATAAACTTTAAAGGAAAAATAAAAAGAGTGAGAAATGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGATAAACTTTAAAGGAAAAATAAAAAGAGTGAGAAATGACACA  550

seq1  AAGAGGACCAAAGTCACTGTTAGGTTAGGGTGAAGACACCACAGAGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACCAAAGTCACTGTTAGGTTAGGGTGAAGACACCACAGAGTTCC  600

seq1  AATCCCACCAGTGTGACAACCCAGAGGACACAGGGCGCAGACTGACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACCAGTGTGACAACCCAGAGGACACAGGGCGCAGACTGACAAAA  650

seq1  TTAATCCAAGAAAAAGTAAA-TGATCTAAAAAGTCCTCAACCCGTTAAAT  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTAATCCAAGAAAAAGTAAATTGATCTAAAAAGTCCTCAACCCGTTAAAT  700

seq1  CAATCAAATAGATTCTCTCTTAAAATCCTCTCAAAAAATCTCTAGGTTAG  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAATCAAATAGATTCTCTCTTAAAATCCTCTC-AAAAATCTCTAGGTTAG  749

seq1  GATTCTTTCCTGACAAATTCTAACAAATGGTCTTATTTTATTTTATTTTT  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATTCTTTCCTGACAAATTCT-ACAAATGGTCTTATTTTATTTTATTTTT  798

seq1  TAAGTTCATAAATAATAATACTGTGAGATTTT-CTCCAGAAAAGAACTGG  848
      ||||||| | |||||||||||||||||||||| |||||||||||||||||
seq2  TAAGTTCCTCAATAATAATACTGTGAGATTTTCCTCCAGAAAAGAACTGG  848

seq1  AACGATGATT  858
      |||||||| |
seq2  AACGATGAAT  858