BAC Information

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BAC

Clone NameB6Ng01-340K20
Chromosome15 (Build37)
Map Location 21,183,351 - 21,212,718
singlet/doubletdoublet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340K20.bB6Ng01-340K20.g
ACCGA124303GA124304
length1,1181,189
definitionB6Ng01-340K20.b B6Ng01-340K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,183,351 - 21,184,479)(21,211,544 - 21,212,718)
sequence
gaattcaagaatgggttttgtatacagaactttcataaatatgtgaaatc
tataagatattacttaaatttcataatatattttgacatctctacacaac
agtacaagcattttaaataacgtcttaccaaaaatgacttgctttgaacg
tagtgaaaggagaattctcctctttatttttcattgtttttctaaggaac
aaagtatcatttacacccagaacatattcttcattgtgtactttacactt
atattaaaggattgaaactcaatataagaaaatatattttaaatatattt
tggaaacacttaaataaatataggcactcttgtatacacttgagtgtatt
gaactagaaagtattgacttgtctttcagttattggatataaataactac
tcagattaatacagcctcactataattctgttgatagttcaattcattga
ttatatattggagctgcatttgccaagataaacaatgatttagcagtaag
gatctatggaacaaaatttcttattgtttagcattgttgaattttggaat
gatataagcagtttcaaaatatttctgcatttttataataggcttagtca
ttgatcacaaaggattcaggcttgtaagtcaagattcttttttcaagtga
ttacaatgtgaactctgaaatgatactctcccaggatatggtaacaatga
aaatacaaatgtcttttccattgaccattaattcaaagcactaaaatgat
ggcctgtatttatggcaggacctactttgtaattatgatacaaatacctt
taaagccaaccttcaaaaactggtgtgatagtttttaaaaaccaatataa
tatataagaggaaaaatgtatacctttaggcttaaaatcaatcacaaagc
agcaaattattaattatagcattctgccactatacagctaaattctcttt
gattaaagttttaagcatcaagctagcagcttcaaaacatatctttctta
tcatgctatgactatgatcagacagtctcaaacatcgagatgtttcacag
ctctctactataaagatgtgatgctgcatctacagtactctatgcacaga
acagtatatatattataa

gaattcatctttctattgttttgctcactctttctaatcatctcagcaat
actagtgaaaagtcctcccaatctagccctttcttgctccatgccatttg
caaacatttttgctccttttgtcatttctctttaattagttaactttcaa
aaagatgcccttgtttgtctgtgtttagtccaggaatctgtagtttgctg
ttcttgttgtttgatctcagtttaccttgttattgcaaatagaattttat
gttgaataaataacaaatgctgggataagttttgacacatactcaaatga
ttgggacatactttatgcattcattttctgggtatgcataaataagtata
atgtagagtagactaacagaaacagaaacaagggagtggtgtgcactcct
taaattccaacactcacagacaaaactctgtgagtttgaggccagcctag
tgtacaggtaagttccaggatagccagggctacacagaaaaaccaagact
caaaaaattaaaaatacttaaataaatatataagtaaatagacaaataaa
taaagcaggacaccaagcacacatgtgagtcccaggtcatgtacacataa
tagaaaaagaatgaaacatgaaaagatgatcttgtttgcattggtttcat
ttacatatgctgcatgtcagtggtccgacttccatgtataaaaccttaga
gttgtgtagaagtttctattgtgtctttcatgattgtataaatgtcctca
tttctctagttcacataagtaaactagtagtagagaataatctttaattt
tttttttaaatattttattaagtattttctttatttacatttcaaatgtt
atcccctttcgtggttccccattgaaaaccccctaccccttcctcacctc
cctctgctcaccaacctacccagtcacacttccctgtcctggcattcccc
tacactggggtcatcaagccttcacaggaccaagggcctctcctctcatt
gatgccccacacaccattcttctgctatatatgcagctggagccatggga
tccctccaatggtgttactctttggatgggtcggtttagtcctgggaaac
cactggggggctatgggtgggttccatatagccttgagggcctgcagtcc
catagagggatctttaaattccggaaatccattattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21183351_21184479
seq2: B6Ng01-340K20.b_44_1161

seq1  GAATTCAAGAATGGGTTTTGTATACAGAACTTTCATAAATATGTGAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAATGGGTTTTGTATACAGAACTTTCATAAATATGTGAAATC  50

seq1  TATAAGATATTACTTAAATTTCATAATATATTTTGACATCTCTACACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATATTACTTAAATTTCATAATATATTTTGACATCTCTACACAAC  100

seq1  AGTACAAGCATTTTAAATAACGTCTTACCAAAAATGACTTGCTTTGAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGCATTTTAAATAACGTCTTACCAAAAATGACTTGCTTTGAACG  150

seq1  TAGTGAAAGGAGAATTCTCCTCTTTATTTTTCATTGTTTTTCTAAGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAAGGAGAATTCTCCTCTTTATTTTTCATTGTTTTTCTAAGGAAC  200

seq1  AAAGTATCATTTACACCCAGAACATATTCTTCATTGTGTACTTTACACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATCATTTACACCCAGAACATATTCTTCATTGTGTACTTTACACTT  250

seq1  ATATTAAAGGATTGAAACTCAATATAAGAAAATATATTTTAAATATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAGGATTGAAACTCAATATAAGAAAATATATTTTAAATATATTT  300

seq1  TGGAAACACTTAAATAAATATAGGCACTCTTGTATACACTTGAGTGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACACTTAAATAAATATAGGCACTCTTGTATACACTTGAGTGTATT  350

seq1  GAACTAGAAAGTATTGACTTGTCTTTCAGTTATTGGATATAAATAACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGAAAGTATTGACTTGTCTTTCAGTTATTGGATATAAATAACTAC  400

seq1  TCAGATTAATACAGCCTCACTATAATTCTGTTGATAGTTCAATTCATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTAATACAGCCTCACTATAATTCTGTTGATAGTTCAATTCATTGA  450

seq1  TTATATATTGGAGCTGCATTTGCCAAGATAAACAATGATTTAGCAGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATTGGAGCTGCATTTGCCAAGATAAACAATGATTTAGCAGTAAG  500

seq1  GATCTATGGAACAAAATTTCTTATTGTTTAGCATTGTTGAATTTTGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATGGAACAAAATTTCTTATTGTTTAGCATTGTTGAATTTTGGAAT  550

seq1  GATATAAGCAGTTTCAAAATATTTCTGCATTTTTATAATAGGCTTAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAGCAGTTTCAAAATATTTCTGCATTTTTATAATAGGCTTAGTCA  600

seq1  TTGATCACAAAGGATTCAGGCTTGTAAGTCAAGATTCTTTTTTCAAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCACAAAGGATTCAGGCTTGTAAGTCAAGATTCTTTTTTCAAGTGA  650

seq1  TTACAATGTGAACTCTGAAATGATACTCTCCCAGGATATGGTAACAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGTGAACTCTGAAATGATACTCTCCCAGGATATGGTAACAATGA  700

seq1  AAATACAAATGTCTTTTCCATTGACCATTAATTCAAAGCACTAAAATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAATGTCTTTTCCATTGACCATTAATTCAAAGCACTAAAATGAT  750

seq1  GGCCTGTATTTATGGCAGGACCTACTTTGTAATTATGATACAAATACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTATTTATGGCAGGACCTACTTTGTAATTATGATACAAATACCTT  800

seq1  TAAAGCCAACCTTCAAAAACTGGTGTGATAGTTTTTAAAAACCAATATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCAACCTTCAAAAACTGGTGTGATAGTTTTTAAAAACCAATATAA  850

seq1  TATATAAGAGGAAAAATGTATACCTTTAGGCTTAAAATCAATCACAAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGAGGAAAAATGTATACCTTTAGGCTTAAAATCAATCACAAAGC  900

seq1  AGCAAATTATTAATTATAGCATTCTGCCACTATACAGCTAAATTCTCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTATTAATTATAGCATTCTGCCACTATACAGCTAAATTCTCTTT  950

seq1  GATTAAAGTTTTAAGCATCAAGCTAGGCAGCTTCAAAACATATCTTTCTT  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATTAAAGTTTTAAGCATCAAGCTA-GCAGCTTCAAAACATATCTTTCTT  999

seq1  ATCCATGCTATGACTATGATCAGACAGTTCCTCAAACAATCGAGATTGTT  1050
      || |||||||||||||||||||||||||  ||||||| ||||||| ||||
seq2  AT-CATGCTATGACTATGATCAGACAGT--CTCAAAC-ATCGAGA-TGTT  1044

seq1  TCACAGCTCTCTACTAATAAAGATGTGAATGCCTGCATCTACAGTACTCT  1100
      ||||||||||||||| ||||||||||| ||| ||||||||||||||||||
seq2  TCACAGCTCTCTACT-ATAAAGATGTG-ATG-CTGCATCTACAGTACTCT  1091

seq1  ATTGCACCAGAAACAGTATATATA-TATAA  1129
      | |||| ||| ||||||||||||| |||||
seq2  A-TGCA-CAG-AACAGTATATATATTATAA  1118


seq1: chr15_21211544_21212718
seq2: B6Ng01-340K20.g_64_1252 (reverse)

seq1  AAAAATAAT-GATTT-CAGAAATTAAAGATTCCTCTATGGGACTGCAAGC  48
      ||||||||| ||||| | ||| |||||||| |||||||||||||||| ||
seq2  AAAAATAATGGATTTCCGGAATTTAAAGATCCCTCTATGGGACTGCAGGC  50

seq1  TCCTTCA-GCTATAT-GAACCAACCAATA--CCCCCAGT-GTTTCCAGGG  93
       |||  | ||||||| ||||| ||| |||  |||||||| ||||||  ||
seq2  -CCTCAAGGCTATATGGAACCCACCCATAGCCCCCCAGTGGTTTCCCAGG  99

seq1  ACTAAA-CGA-CCAACCAAAGAGT-ACAC--ATGGAGGGAT-CCATGGCT  137
      |||||| ||| ||| ||||||||| ||||   ||||||||| ||||||||
seq2  ACTAAACCGACCCATCCAAAGAGTAACACCATTGGAGGGATCCCATGGCT  149

seq1  CCAGCTGCATATATAGCAG-AGAATGGTGTTGTTGGGCATCAATGAGAGG  186
      ||||||||||||||||||| ||||||||| ||| ||||||||||||||||
seq2  CCAGCTGCATATATAGCAGAAGAATGGTG-TGTGGGGCATCAATGAGAGG  198

seq1  AGAGGCCCTTGGTTCTGTGAAGGCTTGATGA-CCCAGTGTAGGGGAATGC  235
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  AGAGGCCCTTGGTCCTGTGAAGGCTTGATGACCCCAGTGTAGGGGAATGC  248

seq1  CAGGACAGGGAAGTGTGACTGGGTAGGTTGGTGAGCAGAGGGAGGTGAGG  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGGAAGTGTGACTGGGTAGGTTGGTGAGCAGAGGGAGGTGAGG  298

seq1  AAGGGGTAGGGGGTTTTCAATGGGGAACCACGAAAGGGGATAACATTTGA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTAGGGGGTTTTCAATGGGGAACCACGAAAGGGGATAACATTTGA  348

seq1  AATGTAAATAAAGAAAATACTTAATAAAATATTT-AAAAAAAAATTAAAG  384
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATGTAAATAAAGAAAATACTTAATAAAATATTTAAAAAAAAAATTAAAG  398

seq1  ATTATTCTCTACTACTAGTTTACTTATGTGAACTAGAGAAATGAGGACAT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTCTACTACTAGTTTACTTATGTGAACTAGAGAAATGAGGACAT  448

seq1  TTATACAATCATGAAAGACACAATAGAAACTTCTACACAACTCTAAGGTT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAATCATGAAAGACACAATAGAAACTTCTACACAACTCTAAGGTT  498

seq1  TTATACATGGAAGTCGGACCACTGACATGCAGCATATGTAAATGAAACCA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATGGAAGTCGGACCACTGACATGCAGCATATGTAAATGAAACCA  548

seq1  ATGCAAACAAGATCATCTTTTCATGTTTCATTCTTTTTCTATTATGTGTA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACAAGATCATCTTTTCATGTTTCATTCTTTTTCTATTATGTGTA  598

seq1  CATGACCTGGGACTCACATGTGTGCTTGGTGTCCTGCTTTATTTATTTGT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTGGGACTCACATGTGTGCTTGGTGTCCTGCTTTATTTATTTGT  648

seq1  CTATTTACTTATATATTTATTTAAGTATTTTTAATTTTTTGAGTCTTGGT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACTTATATATTTATTTAAGTATTTTTAATTTTTTGAGTCTTGGT  698

seq1  TTTTCTGTGTAGCCCTGGCTATCCTGGAACTTACCTGTACACTAGGCTGG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTGTAGCCCTGGCTATCCTGGAACTTACCTGTACACTAGGCTGG  748

seq1  CCTCAAACTCACAGAGTTTTGTCTGTGAGTGTTGGAATTTAAGGAGTGCA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTCACAGAGTTTTGTCTGTGAGTGTTGGAATTTAAGGAGTGCA  798

seq1  CACCACTCCCTTGTTTCTGTTTCTGTTAGTCTACTCTACATTATACTTAT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTCCCTTGTTTCTGTTTCTGTTAGTCTACTCTACATTATACTTAT  848

seq1  TTATGCATACCCAGAAAATGAATGCATAAAGTATGTCCCAATCATTTGAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATACCCAGAAAATGAATGCATAAAGTATGTCCCAATCATTTGAG  898

seq1  TATGTGTCAAAACTTATCCCAGCATTTGTTATTTATTCAACATAAAATTC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCAAAACTTATCCCAGCATTTGTTATTTATTCAACATAAAATTC  948

seq1  TATTTGCAATAACAAGGTAAACTGAGATCAAACAACAAGAACAGCAAACT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCAATAACAAGGTAAACTGAGATCAAACAACAAGAACAGCAAACT  998

seq1  ACAGATTCCTGGACTAAACACAGACAAACAAGGGCATCTTTTTGAAAGTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTCCTGGACTAAACACAGACAAACAAGGGCATCTTTTTGAAAGTT  1048

seq1  AACTAATTAAAGAGAAATGACAAAAGGAGCAAAAATGTTTGCAAATGGCA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTAAAGAGAAATGACAAAAGGAGCAAAAATGTTTGCAAATGGCA  1098

seq1  TGGAGCAAGAAAGGGCTAGATTGGGAGGACTTTTCACTAGTATTGCTGAG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAAGAAAGGGCTAGATTGGGAGGACTTTTCACTAGTATTGCTGAG  1148

seq1  ATGATTAGAAAGAGTGAGCAAAACAATAGAAAGATGAATTC  1175
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAGAAAGAGTGAGCAAAACAATAGAAAGATGAATTC  1189


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