BAC Information

Click to search

BAC

Clone NameB6Ng01-341B02
Chromosome15 (Build37)
Map Location 79,492,047 - 79,642,768
singlet/doubletdoublet
Overlap genePgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr
Upstream geneLrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik
Downstream geneCbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341B02.bB6Ng01-341B02.g
ACCGA124566GA124567
length1,1391,089
definitionB6Ng01-341B02.b B6Ng01-341B02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,492,047 - 79,493,178)(79,641,683 - 79,642,768)
sequence
gaattcctgcatgggaactactactggagtttattcaagaacctactatg
acaggcagcctccttgtgatagggtcccaggtggtggtatccagtctggc
ttgcattttagttcagataattcatttcagtcatgtttaaagatcaaatc
caagctgggtgtagcggtatacctctactctcagcaatcaagaggtagag
gctgggggatctctgtgagttcagggctagcctggtctatagagttccag
ggcatccagggttcagagagagactctgtctccaaaagtaaaataaaata
aggtcaagttcggggccttgagagatggctcagccaaaaagggtacttgt
tgctcttgcagaggacctgggttgggttcccagcccggacaaggatggct
cacaaccatctgtagctactgtcccaggggatccaccgccctctgctggc
ctctactggcactgcacttacaaggttcacaacatacatgatggcagagc
actcctacacatagaagaaaaataaatccgcagttgttttgagaatggag
tctctgtgtaaccctggctgtcctggaacttgctatgtagaccaagatgg
cttcaaactcacagagatctgcctgttcctgcctcgggagtgttgggatt
aatggtgtacacccacatacactgccccccccaaaaaaaaaaatcaagtt
tatttcggagattcacaaaagatgttgacttgtcaccgttagtgacactt
gaaaggataataacagttctgaaagagggggtccaaaaacatctggggcc
atgacagcactgggacaaaggtaactttccaaggcaacatggagcccccc
tgaatgcagggcctgcgcttagaaaatacataataaagccattcctagtt
tatgagatgtagatacacacaggtccattcctagctatgagatgtagaat
acacacaggttccacgccacacaggccttttcagcatctgtgaccacaaa
tctggtcctttcgttcccaccattattccttgcccttacatctgggtgct
actgctgtgtctttcacaccagagatgatagacctcgtccctttgttcca
ttcccacggtgacattgtgccagatgaagcccagtcttt
gaattcactgtcctaaaccagactggcctcgaactcacagatagttacct
gactctgccttccaaatgctgggattaaaagtatgcaccgccatgcccag
cttctacgctgctgctgctgctgcttctcctcctcttcttcttcttcctc
ctcctcttcctcctcctcctcttcttcttggtttccaagacagggtttct
ctgtgtagtcctcgctgtcctggaactaacactgcagaccagtgtggcct
tgaattcataaagagatctgcctgcctctcaggtgctgagattaaaagca
tgtgcccccgccaccaggctctctgggtagtcttttttttttaagattta
tttgtttgtttgtttgtttgtttgtttatatgagtactctgtagctgtct
ttagacacaccagaagagggcatcagatcccattacagatggttgtgagc
cacaatgtggttgctgggaattgaacttaggacctctgggagaacagtca
gtgctcttaaccactgagccatctctccagccatgtcctcaaatcctgct
ccaggcactggactcaggctggccagatgaggcagttgtctggctactgc
ctagagacacagactatcccagcagcatgggttccattgtgtgaacttga
acatcagtgccccaaattagtgactgagtaacctgaagccacttgcttaa
cctctctgtgcttcatatggctgtctgcaactcaggaatggtggcagagg
cccagggcttcctaaaggatattgtgaggctttagataagagtgtcaaag
cagtagctagctagtgtgacagccacctcaggacagctccctccttgcca
ctttcctctctcatagaaccctgtagcagtcgctttcctccatgcttcct
gttttccaagttgaaaaataacgtgtgggtatagtttgctagtggctgca
gttttggcagtgtagacagactttagacaggagaaaacctaaggctcgag
tcacctgagcttgataaaccagcttcatggagggagcaagaaggacctgg
ctcacaagggctttcccaactgccttatttcccacgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_79492047_79493178
seq2: B6Ng01-341B02.b_46_1184

seq1  GAATTCCTGCATGGGAACTACTACTGGAGTTTATTCAAGAACCTACTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCATGGGAACTACTACTGGAGTTTATTCAAGAACCTACTATG  50

seq1  ACAGGCAGCCTCCTTGTGATAGGGTCCCAGGTGGTGGTATCCAGTCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGCCTCCTTGTGATAGGGTCCCAGGTGGTGGTATCCAGTCTGGC  100

seq1  TTGCATTTTAGTTCAGATAATTCATTTCAGTCATGTTTAAAGATCAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTTAGTTCAGATAATTCATTTCAGTCATGTTTAAAGATCAAATC  150

seq1  CAAGCTGGGTGTAGCGGTATACCTCTACTCTCAGCAATCAAGAGGTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGGTGTAGCGGTATACCTCTACTCTCAGCAATCAAGAGGTAGAG  200

seq1  GCTGGGGGATCTCTGTGAGTTCAGGGCTAGCCTGGTCTATAGAGTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGGATCTCTGTGAGTTCAGGGCTAGCCTGGTCTATAGAGTTCCAG  250

seq1  GGCATCCAGGGTTCAGAGAGAGACTCTGTCTCCAAAAGTAAAATAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCAGGGTTCAGAGAGAGACTCTGTCTCCAAAAGTAAAATAAAATA  300

seq1  AGGTCAAGTTCGGGGCCTTGAGAGATGGCTCAGCCAAAAAGGGTACTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAGTTCGGGGCCTTGAGAGATGGCTCAGCCAAAAAGGGTACTTGT  350

seq1  TGCTCTTGCAGAGGACCTGGGTTGGGTTCCCAGCCCGGACAAGGATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTGCAGAGGACCTGGGTTGGGTTCCCAGCCCGGACAAGGATGGCT  400

seq1  CACAACCATCTGTAGCTACTGTCCCAGGGGATCCACCGCCCTCTGCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATCTGTAGCTACTGTCCCAGGGGATCCACCGCCCTCTGCTGGC  450

seq1  CTCTACTGGCACTGCACTTACAAGGTTCACAACATACATGATGGCAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGGCACTGCACTTACAAGGTTCACAACATACATGATGGCAGAGC  500

seq1  ACTCCTACACATAGAAGAAAAATAAATCCGCAGTTGTTTTGAGAATGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTACACATAGAAGAAAAATAAATCCGCAGTTGTTTTGAGAATGGAG  550

seq1  TCTCTGTGTAACCCTGGCTGTCCTGGAACTTGCTATGTAGACCAAGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTAACCCTGGCTGTCCTGGAACTTGCTATGTAGACCAAGATGG  600

seq1  CTTCAAACTCACAGAGATCTGCCTGTTCCTGCCTCGGGAGTGTTGGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACTCACAGAGATCTGCCTGTTCCTGCCTCGGGAGTGTTGGGATT  650

seq1  AATGGTGTACACCCACATACACTGCCCCCCCCAAAAAAAAAAATCAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTACACCCACATACACTGCCCCCCCCAAAAAAAAAAATCAAGTT  700

seq1  TATTTCGGAGATTCACAAAAGATGTTGACTTGTCACCGTTAGTGACACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCGGAGATTCACAAAAGATGTTGACTTGTCACCGTTAGTGACACTT  750

seq1  GAAAGGATAATAACAGTTCTGAAAGAGGGGGTCCAAAAACATCTGGGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATAATAACAGTTCTGAAAGAGGGGGTCCAAAAACATCTGGGGCC  800

seq1  ATGACAGCACTGGGACAAAGGTAACTTTCCAAAGGCAACATGGAGCCCCC  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGACAGCACTGGGACAAAGGTAACTTTCC-AAGGCAACATGGAGCCCCC  849

seq1  CTGAATGCAGGGCCTGCGCTTAGAAAATACATAATAAAGCCATTCCTAG-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGAATGCAGGGCCTGCGCTTAGAAAATACATAATAAAGCCATTCCTAGT  899

seq1  TTATGAGATGTAGATACACACAGGTCCATTCCTAGCTATGAGATGTAG-A  948
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTATGAGATGTAGATACACACAGGTCCATTCCTAGCTATGAGATGTAGAA  949

seq1  TACACACAGG-TCCACG-CACACAGGCC-TTTCAGCATCTGTGACCACAA  995
      |||||||||| |||||| |||||||||| |||||||||||||||||||||
seq2  TACACACAGGTTCCACGCCACACAGGCCTTTTCAGCATCTGTGACCACAA  999

seq1  ATCTGGTCC-TTCGTTCCCACCA-TATTCC-TGCCCTTACATCTGGGTGC  1042
      ||||||||| ||||||||||||| |||||| |||||||||||||||||||
seq2  ATCTGGTCCTTTCGTTCCCACCATTATTCCTTGCCCTTACATCTGGGTGC  1049

seq1  TACTGCTGTGTCTTTCACACCAAGAGATGATAGACCCTCGTCTCTTTGTC  1092
      ||||||||||||||||||||| |||||||||||| ||||||| |||||| 
seq2  TACTGCTGTGTCTTTCACACC-AGAGATGATAGA-CCTCGTCCCTTTGTT  1097

seq1  CCTTTCCCAC-GTGACATTTGTG-CAGATG-AGCCAAGTCTTT  1132
      || ||||||| |||||| ||||| |||||| |||| |||||||
seq2  CCATTCCCACGGTGACA-TTGTGCCAGATGAAGCCCAGTCTTT  1139

seq1: chr15_79641683_79642768
seq2: B6Ng01-341B02.g_69_1157 (reverse)

seq1  CAACGTGGGGAATTAGGGCAGGTGGG-AAGCCC-TGTGAGCCAGGTCCTT  48
      |||||| ||||| || ||||| |||| |||||| ||||||||||||||||
seq2  CAACGT-GGGAAATAAGGCAGTTGGGAAAGCCCTTGTGAGCCAGGTCCTT  49

seq1  CTTGCTTCCCTCCATG-AGCTAGTTTATCAGCCTCAGTTGACTCGAGCCT  97
      ||||| |||||||||| |||| ||||||||  ||||| ||||||||||||
seq2  CTTGC-TCCCTCCATGAAGCTGGTTTATCAAGCTCAGGTGACTCGAGCCT  98

seq1  TAGG-TCTCTCCTGTCTAAAGTCTGTCTACAACCTGCCAAAACTGCAGCC  146
      |||| | ||||||||||||||||||||||||  |||||||||||||||||
seq2  TAGGTTTTCTCCTGTCTAAAGTCTGTCTACA--CTGCCAAAACTGCAGCC  146

seq1  ACTAGCAAACTATACCCACACGTTATTTTTCAACTTGGAAAACAGGAAGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAAACTATACCCACACGTTATTTTTCAACTTGGAAAACAGGAAGC  196

seq1  ATGGAGGGAAGCGACTGCTACAGGG-TCTATGAGAGAGGAAAGTGGCAAG  245
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGGAGGAAAGCGACTGCTACAGGGTTCTATGAGAGAGGAAAGTGGCAAG  246

seq1  GAGGGAGCTGTCCTGAGGTGGCTGTCACACTAGCTAGCTACTGCTTTGAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCTGTCCTGAGGTGGCTGTCACACTAGCTAGCTACTGCTTTGAC  296

seq1  ACTCTTATCTAAAGCCTCACAATATCC-TTAGGAAGCCCTGGGCCTCTGC  344
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTCTTATCTAAAGCCTCACAATATCCTTTAGGAAGCCCTGGGCCTCTGC  346

seq1  CACCATTCCTGAGTTGCAGACAGCCATATGAAGCACAGAGAGGTTAAGCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTCCTGAGTTGCAGACAGCCATATGAAGCACAGAGAGGTTAAGCA  396

seq1  AGTGGCTTCAGGTTACTCAGTCACTAATTTGGGGCACTGATGTTCAAGTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTCAGGTTACTCAGTCACTAATTTGGGGCACTGATGTTCAAGTT  446

seq1  CACACAATGGAACCCATGCTGCTGGGATAGTCTGTGTCTCTAGGCAGTAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATGGAACCCATGCTGCTGGGATAGTCTGTGTCTCTAGGCAGTAG  496

seq1  CCAGACAACTGCCTCATCTGGCCAGCCTGAGTCCAGTGCCTGGAGCAGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAACTGCCTCATCTGGCCAGCCTGAGTCCAGTGCCTGGAGCAGGA  546

seq1  TTTGAGGACATGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGACATGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGT  596

seq1  TCTCCCAGAGGTCCTAAGTTCAATTCCCAGCAACCACATTGTGGCTCACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGAGGTCCTAAGTTCAATTCCCAGCAACCACATTGTGGCTCACA  646

seq1  ACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTAAAGACAGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTAAAGACAGC  696

seq1  TACAGAGTACTCATATAAACAAACAAACAAACAAACAAACAAATAAATCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTACTCATATAAACAAACAAACAAACAAACAAACAAATAAATCT  746

seq1  TAAAAAAAAAAGACTACCCAGAGAGCCTGGTGGCGGGGGCACATGCTTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAGACTACCCAGAGAGCCTGGTGGCGGGGGCACATGCTTTT  796

seq1  AATCTCAGCACCTGAGAGGCAGGCAGATCTCTTTATGAATTCAAGGCCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGCACCTGAGAGGCAGGCAGATCTCTTTATGAATTCAAGGCCAC  846

seq1  ACTGGTCTGCAGTGTTAGTTCCAGGACAGCGAGGACTACACAGAGAAACC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTGCAGTGTTAGTTCCAGGACAGCGAGGACTACACAGAGAAACC  896

seq1  CTGTCTTGGAAACCAAGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGGAAACCAAGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGAAG  946

seq1  AAGAAGAAGAGGAGGAGAAGCAGCAGCAGCAGCAGCGTAGAAGCTGGGCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAGGAGGAGAAGCAGCAGCAGCAGCAGCGTAGAAGCTGGGCA  996

seq1  TGGCGGTGCATACTTTTAATCCCAGCATTTGGAAGGCAGAGTCAGGTAAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTGCATACTTTTAATCCCAGCATTTGGAAGGCAGAGTCAGGTAAC  1046

seq1  TATCTGTGAGTTCGAGGCCAGTCTGGTTTA-CACAGTGAATTC  1086
      ||||||||||||||||||||||||||||||  |||||||||||
seq2  TATCTGTGAGTTCGAGGCCAGTCTGGTTTAGGACAGTGAATTC  1089