BAC Information

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BAC

Clone NameB6Ng01-341J18
Chromosome15 (Build37)
Map Location 22,239,130 - 22,362,820
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341J18.bB6Ng01-341J18.g
ACCGA124944GA124945
length1,0541,076
definitionB6Ng01-341J18.b B6Ng01-341J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,239,130 - 22,240,194)(22,362,250 - 22,362,820)
sequence
gaattctcagaaatatgagtcagacaatttgtgcctttaagtggaaatta
aggaatgtcagttttcatgagcatgtgaacagaacgttagaaattgaaaa
cagtaaaatctcaacatattgtaaattataagaaaatatttagtataaag
aagaataaaatcttataacttgtgggaaaactctgctaattaaggtccaa
gcccaccatgtctagataacctttggctcagcacattatgggagactcag
tagcaggctttcttcttctcttaccttgtactgggaattctaagccccta
aacacacctctaactgatagccttaattagattataggacaaaatttctt
tctcctgacaaaaccagtttgaccagcacctgaaatttctgaaatgcttc
tgcatgctaatgaggcattcttggtacccttagccaatgacatttgccta
tcctggatatccctgccctcagtcccccaaaactttataagccttcaagt
tgatgtaaagttgatgtgcctcctgacagctcgtccagggtggtctttca
ccctaagtactcacaggcttctggatcccaaccccacacccctcccccac
tgctgatctctgctcccacagccctgatggattgtatctgcagatgatac
acaagagcagtgagaaccacaatatctgatttaatttcctagtctaaatt
caaatagagaatcaaatttgttggtaatcactaatttaatatattacaca
cacacacacacacacacacacacacacacacacacacacacacagagaca
cacacacagagttttatttatatgttttcagagataactaccactaaaca
ttatacagatttggtatgttataattaacaaccattaatgaaaaaggagg
ccataaatttgaaaagaataaggtaggtatgtggaaaagtttgagggaat
aaaaagcaaagggaaatgaatggtctaatatgtatattgcaaaataaaaa
gtaatttctatatgtgtgatattcatagatgatgtttatgtcactctaaa
tgtc

gaattccaagaaccttctagtaccagctacagatgaagcttctaggtgaa
ttccagttctatttctccgcattcatatcctatgactcacatgtatggtg
tgtactttttgaagtaaatcatgtttagtacagaaacataaaacaagtct
acctgtagaaaacaaaaggctgttgtagtgctaatctctaaacgggacat
ctatataacattctacacaatggcttagcagccattgaaacaggacaggg
tataaagaatctaagagtgaggagatacatttccatagagaaagagtatt
tggtgaagatgacatcagtcatggtgaactcatagtaaccaagactgctt
gcacaagatcaaggtgcctagaattgctgcataggctctcataaattcta
gcttttctttaaaactattgtccatggatgactgttgaggacacaggata
tgctttccttaggcatgtgggcttgagagacgacctatgctctaggatag
attttacataaaggtacatacagggagttagaaatggttttagtggacag
taaagaaagaaagaaagagaaaatatgaaattattatggaaagcacttgt
gaggaaggaattagagagaggatatgaggtagatttggttcaggcttgtt
aaacttcatatatgaatataaaataccaccttttaaaaagagaacatata
aaataggaggttaaagtggtggggacataaaaataaaattgaaggaaaga
catggaaattctttatacatacttatatatatgaaatgaatattaaatga
tttatagtagatcatattattaatcctaaagagtattcattagacttatt
atgaaggatgattcttagattaatttgggaaaaatttattaagtcaaatt
accctatagtgcaatagaatcatcaaactgaaagatctaaaattttgatg
attcttaccagggaggctaaaaatttagagaaatttagctttttctatat
taaagcaaataggataattgaataattttattatacattacatgtttagc
atgtattattattctcttccctatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22239130_22240194
seq2: B6Ng01-341J18.b_44_1097

seq1  GAATTCTCAGAAATATGAGTCAGACAATTTGTGCCTTTAAGTGGAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAATATGAGTCAGACAATTTGTGCCTTTAAGTGGAAATTA  50

seq1  AGGAATGTCAGTTTTCATGAGCATGTGAACAGAACGTTAGAAATTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTCAGTTTTCATGAGCATGTGAACAGAACGTTAGAAATTGAAAA  100

seq1  CAGTAAAATCTCAACATATTGTAAATTATAAGAAAATATTTAGTATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAATCTCAACATATTGTAAATTATAAGAAAATATTTAGTATAAAG  150

seq1  AAGAATAAAATCTTATAACTTGTGGGAAAACTCTGCTAATTAAGGTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAATCTTATAACTTGTGGGAAAACTCTGCTAATTAAGGTCCAA  200

seq1  GCCCACCATGTCTAGATAACCTTTGGCTCAGCACATTATGGGAGACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCATGTCTAGATAACCTTTGGCTCAGCACATTATGGGAGACTCAG  250

seq1  TAGCAGGCTTTCTTCTTCTCTTACCTTGTACTGGGAATTCTAAGCCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCTTTCTTCTTCTCTTACCTTGTACTGGGAATTCTAAGCCCCTA  300

seq1  AACACACCTCTAACTGATAGCCTTAATTAGATTATAGGACAAAATTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACCTCTAACTGATAGCCTTAATTAGATTATAGGACAAAATTTCTT  350

seq1  TCTCCTGACAAAACCAGTTTGACCAGCACCTGAAATTTCTGAAATGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGACAAAACCAGTTTGACCAGCACCTGAAATTTCTGAAATGCTTC  400

seq1  TGCATGCTAATGAGGCATTCTTGGTACCCTTAGCCAATGACATTTGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTAATGAGGCATTCTTGGTACCCTTAGCCAATGACATTTGCCTA  450

seq1  TCCTGGATATCCCTGCCCTCAGTCCCCCAAAACTTTATAAGCCTTCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATATCCCTGCCCTCAGTCCCCCAAAACTTTATAAGCCTTCAAGT  500

seq1  TGATGTAAAGTTGATGTGCCTCCTGACAGCTCGTCCAGGGTGGTCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAAAGTTGATGTGCCTCCTGACAGCTCGTCCAGGGTGGTCTTTCA  550

seq1  CCCTAAGTACTCACAGGCTTCTGGATCCCAACCCCACACCCCTCCCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGTACTCACAGGCTTCTGGATCCCAACCCCACACCCCTCCCCCAC  600

seq1  TGCTGATCTCTGCTCCCACAGCCCTGATGGATTGTATCTGCAGATGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATCTCTGCTCCCACAGCCCTGATGGATTGTATCTGCAGATGATAC  650

seq1  ACAAGAGCAGTGAGAACCACAATATCTGATTTAATTTCCTAGTCTAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGCAGTGAGAACCACAATATCTGATTTAATTTCCTAGTCTAAATT  700

seq1  CAAATAGAGAATCAAATTTGTTGGTAATCACTAATTTAATATATTACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGAGAATCAAATTTGTTGGTAATCACTAATTTAATATATTACACA  750

seq1  CACACACACACACACACACACACACACACACACACACACACACAGAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACAGAGACA  800

seq1  CACACACAGAGTTTTATTTATATGTTTTCAGAGATAACTACCACTAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGAGTTTTATTTATATGTTTTCAGAGATAACTACCACTAAACA  850

seq1  TTATACAGATTTGGTATGTTATAATTAACAACCATTAATGAAAAAGGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAGATTTGGTATGTTATAATTAACAACCATTAATGAAAAAGGAGG  900

seq1  CCATAAATTTGAAAAGAATAAGGTAGGTTATGTGGAAAAGTTTGAGGGAA  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCATAAATTTGAAAAGAATAAGGTAGG-TATGTGGAAAAGTTTGAGGGAA  949

seq1  TAAAAGCAAAAGGGAAATGAATGGTCTAATTATGTTATAATTGCAAAAAT  1000
      |||||   ||||||||||||||||||||| |||| ||| |||||||||  
seq2  TAAAAAGCAAAGGGAAATGAATGGTCTAA-TATG-TAT-ATTGCAAAA--  994

seq1  AAAAAAGTAATTTCTATATGTGTGATATTCATAGAATGGATGTTTATGTC  1050
       ||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  TAAAAAGTAATTTCTATATGTGTGATATTCATAGA--TGATGTTTATGTC  1042

seq1  ACTTCTTAAAATGTC  1065
      || |||  |||||||
seq2  AC-TCT--AAATGTC  1054


seq1: chr15_22362250_22362820
seq2: B6Ng01-341J18.g_565_1142 (reverse)

seq1  TCATAGGG-AGAGAATA--TATACATGCTAAAACATTGTTAAATGTATAA  47
      |||||||| ||||||||   ||||||||| ||||| |||  |||||||||
seq2  TCATAGGGAAGAGAATAATAATACATGCT-AAACA-TGT--AATGTATAA  46

seq1  TAAAAATTAATTTCAATTATCCTATTTGCTTTAATATAG-AAAAGCTTAA  96
      | |||||||  |||||||||||||||||||||||||||| ||||||| ||
seq2  T-AAAATTA--TTCAATTATCCTATTTGCTTTAATATAGAAAAAGCTAAA  93

seq1  TTTCTCT-AATTTTTAGCTTCC--TGTAAG-ATCATCAAAATTTTAGATC  142
      ||||||| |||||||||| |||   ||||| |||||||||||||||||||
seq2  TTTCTCTAAATTTTTAGCCTCCCTGGTAAGAATCATCAAAATTTTAGATC  143

seq1  -TTCAGTTTGATGATTCTATTGCACTATAGGGT-ATTTGACTT-ATAAAT  189
       |||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TTTCAGTTTGATGATTCTATTGCACTATAGGGTAATTTGACTTAATAAAT  193

seq1  TTTT-CCAAATTTATCT-AGATTCATCCTTCATAATAAGTCTAATGAATA  237
      |||| ||||||| |||| ||| ||||||||||||||||||||||||||||
seq2  TTTTCCCAAATTAATCTAAGAATCATCCTTCATAATAAGTCTAATGAATA  243

seq1  CTCTTTAGGATTAATAATATGATCTACTATAAATCATTTAATATTCA-TT  286
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCTTTAGGATTAATAATATGATCTACTATAAATCATTTAATATTCATTT  293

seq1  CATATATATAAGTATGTATAAAGAATTTCCATGTCTTTCCTTCAATTTTA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATAAGTATGTATAAAGAATTTCCATGTCTTTCCTTCAATTTTA  343

seq1  TTTTTATGTCCCCACCACTTTAACCTCCTATTTTATATGTTCTCTTTTTA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTCCCCACCACTTTAACCTCCTATTTTATATGTTCTCTTTTTA  393

seq1  AAAGGTGGTATTTTATATTCATATATGAAGTTTAACAAGCCTGAACCAAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGTATTTTATATTCATATATGAAGTTTAACAAGCCTGAACCAAA  443

seq1  TCTACCTCATATCCTCTCTCTAATTCCTTCCTCACAAGTGCTTTCCATAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCATATCCTCTCTCTAATTCCTTCCTCACAAGTGCTTTCCATAA  493

seq1  TAATTTCATATTTTCTCTTTCTTTCTTTCTTTACTGTCCACTAAAACCAT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCATATTTTCTCTTTCTTTCTTTCTTTACTGTCCACTAAAACCAT  543

seq1  TTCTAACTCCCTGTATGTACCTTTATGTAAAATCT  571
      |||||||||||||||||||||||||||||||||||
seq2  TTCTAACTCCCTGTATGTACCTTTATGTAAAATCT  578


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