BAC Information

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BAC

Clone NameB6Ng01-341N09
Chromosome15 (Build37)11 (Build37)
Map Location 98,598,502 - 98,599,220107,568,320 - 107,568,442
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik
Downstream geneWnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341N09.bB6Ng01-341N09.g
ACCGA125104GA125105
length72095
definitionB6Ng01-341N09.b B6Ng01-341N09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,598,502 - 98,599,220)(107,568,320 - 107,568,442)
sequence
gaattcacccatcctctccatggcaacaacttagcgggagatgtcagaca
cctgctaacctaatgtgtgaatgaggagaggaagaaaggagaggggactg
aagtaagatggacttggatacaaccaagaataacagggaacatccagagt
gcagatgccttccctctaggaagaggcattctccagatggggctgtggcg
agagagtcttttaactttccttttccctcccctgtcggtccctttgcctc
cctcgctttcctagcttttctttccatagcatgcacgctctgtggtggac
ttaagccccaaaccacaaccttgacaaattccaattggatttggtcagca
gggccaacaccccctcccagcacaggcgctgggctcaggcccaggactgg
ggtcagtggtggggtgggagtttgcaacccacagaactggtgggtggcta
cagtttcagcttttactgggctctggtggcagctggagggagggaaaaga
gcacactctggaggagccctaccttgaccaaatggctaggaagcttagag
ttgtggggagcagctggttacaggggagtagcacttctattcacccctgc
ttgtgtcaagccaacctctcctgacccttgtctccccacacaccagaggg
tgaaggacaaaaaacctgagggggtctctcaatccacagccaccttttcc
accatttggaatctgtcagt
caggacatccagggctacacaaagaaactctttctggaaaaagtggagag
agagagagagagagagagagagagagagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98598502_98599220
seq2: B6Ng01-341N09.b_52_771 (reverse)

seq1  ACTGACAGCTTCC-TATGGTGGAAAAGGTGGGTGTGGCTGGAGAGACCCC  49
      |||||||| ||||  |||||||||||||||| ||||| | ||||||||||
seq2  ACTGACAGATTCCAAATGGTGGAAAAGGTGGCTGTGGATTGAGAGACCCC  50

seq1  CTCAGGTCTTCTGTCCTTCACCCTCTGGTGTGTGGGGAGACAAGGGTCAG  99
      ||||||| || |||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTTTTTGTCCTTCACCCTCTGGTGTGTGGGGAGACAAGGGTCAG  100

seq1  GAGAGGTTGGCCTGACACAAGCAGGGGTGGATAGAAGTGCTACTCCCCTG  149
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  GAGAGGTTGGCTTGACACAAGCAGGGGTGAATAGAAGTGCTACTCCCCTG  150

seq1  TAACCAGCTGCTCCCCACCACTCTAAGCTTCCTAGCCATTTGGTCAAGGT  199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAACCAGCTGCTCCCCACAACTCTAAGCTTCCTAGCCATTTGGTCAAGGT  200

seq1  AGGGCTCCTCCAGAGTGTGCTCTTTTCCCTCCCTCCAGCTGCCACCAGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCCTCCAGAGTGTGCTCTTTTCCCTCCCTCCAGCTGCCACCAGAG  250

seq1  CCCAGTAAAAGCTGAAACTGTAGCCACCCACCAGTTCTGTGGGTTGCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAAAAGCTGAAACTGTAGCCACCCACCAGTTCTGTGGGTTGCAAA  300

seq1  CTCCCACCCCACCACTGACCCCAGTCCTGGGCCTGAGCCCAGCGCCTGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCCCACCACTGACCCCAGTCCTGGGCCTGAGCCCAGCGCCTGTG  350

seq1  CTGGGAGGGGGTGTTGGCCCTGCTGACCAAATCCAATTGGAATTTGTCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGGGGTGTTGGCCCTGCTGACCAAATCCAATTGGAATTTGTCAA  400

seq1  GGTTGTGGTTTGGGGCTTAAGTCCACCACAGAGCGTGCATGCTATGGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGGTTTGGGGCTTAAGTCCACCACAGAGCGTGCATGCTATGGAAA  450

seq1  GAAAAGCTAGGAAAGCGAGGGAGGCAAAGGGACCGACAGGGGAGGGAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTAGGAAAGCGAGGGAGGCAAAGGGACCGACAGGGGAGGGAAAA  500

seq1  GGAAAGTTAAAAGACTCTCTCGCCACAGCCCCATCTGGAGAATGCCTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTAAAAGACTCTCTCGCCACAGCCCCATCTGGAGAATGCCTCTT  550

seq1  CCTAGAGGGAAGGCATCTGCACTCTGGATGTTCCCTGTTATTCTTGGTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGGGAAGGCATCTGCACTCTGGATGTTCCCTGTTATTCTTGGTTG  600

seq1  TATCCAAGTCCATCTTACTTCAGTCCCCTCTCCTTTCTTCCTCTCCTCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAGTCCATCTTACTTCAGTCCCCTCTCCTTTCTTCCTCTCCTCAT  650

seq1  TCACACATTAGGTTAGCAGGTGTCTGACATCTCCCGCTAAGTTGTTGCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATTAGGTTAGCAGGTGTCTGACATCTCCCGCTAAGTTGTTGCCA  700

seq1  TGGAGAGGATGGGTGAATTC  719
      ||||||||||||||||||||
seq2  TGGAGAGGATGGGTGAATTC  720

seq1: chr11_107568320_107568442
seq2: B6Ng01-341N09.g_81_171 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50

seq1  CTCTCTCCCTCTCTTTCTCTCTCTCTTCTCTCTCCTTTTTTGAGATAGGG  100
      |                                 ||||||  ||| || |
seq2  C--------------------------------ACTTTTTCCAGAAAGAG  68

seq1  TTTCTCTGTGTAGCCCTGGATGT  123
      ||||| |||||||||||||||||
seq2  TTTCTTTGTGTAGCCCTGGATGT  91