BAC Information

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BAC

Clone NameB6Ng01-342N09
Chromosome15 (Build37)
Map Location 99,710,370 - 99,831,695
singlet/doubletdoublet
Overlap geneLOC100042918, 1700030F18Rik, Gm920, D330037H05Rik
Upstream geneRhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481
Downstream gene4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342N09.bB6Ng01-342N09.g
ACCGA125792GA125793
length1,1041,091
definitionB6Ng01-342N09.b B6Ng01-342N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,710,370 - 99,711,476)(99,830,599 - 99,831,695)
sequence
gaattcaatattatattacaagagtcaactcacaacttttcggtcagtgt
aaactagacagaaatactgacatatcattatcataggcctttatcggcta
gcaaaagggacaatagaggtggctgcccacgttcacaagtgccacaggat
caaacctgtctgcttccacggtgtggccttagccttttctggctgcccca
ggacggtaatacagacttgttcttgattcctgtcataactgaaagggaaa
cttccataccctgtctggagcccttggtgctcggcagatggaggaagacc
cctcagattccttgtgcccggagcccactcaggtggcaccaaccttgact
tccaggtgggaagggacagctgtaaggtctgcgtcataaatctgaaggta
acctgggaggagctgccggtggtggctagtgtcactgctgccattgaaaa
acccgctgctgacagcactgcctcctccaggagtgccagctaccgctgga
cccacgtcagttgctgactgttcactcctgggacctttactaacctaatc
caagcagccttgcaggagctacagcttctggtgctggctggtctaggact
gaccacaagctcttcacagagttgtcaacctgcctaccttctctcctcca
tgctgtgtggacacactgctgtcccccacaacagccccaggtcagtgggt
aaactgtaacccaagaagttctgcacatagcagacatgtgaccccatgtc
ctgtgagcacccatgggaagccatgcctgctctccatttccatggagatc
ctgaagagactgagaaggaagaggagcccactgccggaaaggctatagcc
aaggagtttcaggactggagagatggctcagttgtcaagggcactgactg
cttttctagaggtcctgagttcaattcccaatagtggaattaatcccaag
gttagtacttttagtgactaaggtagtacgtggggtcacacatggtcatc
tgacccagcatctgtatgggactgatatcctctctggtggtgtctgagga
tatgtgacaatgtacttcacattgcataaaaaaaaatttttttttatcca
aaga
gaattcatttaagataaccacattaaaaacaaacaaacataaaaatcacc
agattgttttaaacactcaagataagcatgttatgattaatttttttctt
cttcttgctttgaggaatgcttctctgttctggctatgtttgtagaccaa
gctaggcttgaactcaaagagaaccacgtcaggcaattaaataactaaac
acacatatgtccttacctgcctcttccaaagtccccattctgttccatct
gtaaaatgggagcctcctttggaagataagtttgttcctgctgccctgtt
actgttgggttatgccgttcagaaagaaagatccttgaactagatctgct
cagtggtccatcccccaatgacacggagccctctgttgagtgttctgaac
cactggatgacctaaaatgaggcttcacactaaaaaagacacacacacaa
aaataaatgttatggttttttttttaattttttaaattaggtattttctt
catttacatttcaaatgctatcccaaaaattaagtaatttccacatcgag
taatatatgtggaaaaacttggggaaaaaaatctgaaattttagatcaag
ctatttctacctcaatattaaaaacagtcagtacaaggtgtggtggccca
gctttaatctcaagaggatctctttaattctgagcatagcctagtctaca
gaaagttccaggatagccaaggcttcatagattctgtgtcagcaacaact
aagccactgttaggactttagctggcatctaaagaaaccaagcaagcaac
caaagacagcaagctttgatttattagcgatgctataccaggtatctgaa
caagagtaaacacactaatgggaataaaaaatgcattatagtacagggga
ctaaaacatggtattctttttatatattatatcaaaaacaataaacttgt
aattattctgcaccattaatattatgggataaaaatgatgcccaaaaaaa
gaataggggacaggtgatgtgcatttaatccacaggcatttgtcaggcag
agttgtgagtctgagcagcctagaatatcagaagcgggttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_99710370_99711476
seq2: B6Ng01-342N09.b_48_1151

seq1  GAATTCAATATTATATTACAAGAGTCAACTCACAACTTTTCGGTCAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTATATTACAAGAGTCAACTCACAACTTTTCGGTCAGTGT  50

seq1  AAACTAGACAGAAATACTGACATATCATTATCATAGGCCTTTATCGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGACAGAAATACTGACATATCATTATCATAGGCCTTTATCGGCTA  100

seq1  GCAAAAGGGACAATAGAGGTGGCTGCCCACGTTCACAAGTGCCACAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGGACAATAGAGGTGGCTGCCCACGTTCACAAGTGCCACAGGAT  150

seq1  CAAACCTGTCTGCTTCCACGGTGTGGCCTTAGCCTTTTCTGGCTGCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTGTCTGCTTCCACGGTGTGGCCTTAGCCTTTTCTGGCTGCCCCA  200

seq1  GGACGGTAATACAGACTTGTTCTTGATTCCTGTCATAACTGAAAGGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGTAATACAGACTTGTTCTTGATTCCTGTCATAACTGAAAGGGAAA  250

seq1  CTTCCATACCCTGTCTGGAGCCCTTGGTGCTCGGCAGATGGAGGAAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATACCCTGTCTGGAGCCCTTGGTGCTCGGCAGATGGAGGAAGACC  300

seq1  CCTCAGATTCCTTGTGCCCGGAGCCCACTCAGGTGGCACCAACCTTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGATTCCTTGTGCCCGGAGCCCACTCAGGTGGCACCAACCTTGACT  350

seq1  TCCAGGTGGGAAGGGACAGCTGTAAGGTCTGCGTCATAAATCTGAAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGGGAAGGGACAGCTGTAAGGTCTGCGTCATAAATCTGAAGGTA  400

seq1  ACCTGGGAGGAGCTGCCGGTGGTGGCTAGTGTCACTGCTGCCATTGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGGAGCTGCCGGTGGTGGCTAGTGTCACTGCTGCCATTGAAAA  450

seq1  ACCCGCTGCTGACAGCACTGCCTCCTCCAGGAGTGCCAGCTACCGCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCTGCTGACAGCACTGCCTCCTCCAGGAGTGCCAGCTACCGCTGGA  500

seq1  CCCACGTCAGTTGCTGACTGTTCACTCCTGGGACCTTTACTAACCTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGTCAGTTGCTGACTGTTCACTCCTGGGACCTTTACTAACCTAATC  550

seq1  CAAGCAGCCTTGCAGGAGCTACAGCTTCTGGTGCTGGCTGGTCTAGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGCCTTGCAGGAGCTACAGCTTCTGGTGCTGGCTGGTCTAGGACT  600

seq1  GACCACAAGCTCTTCACAGAGTTGTCAACCTGCCTACCTTCTCTCCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAAGCTCTTCACAGAGTTGTCAACCTGCCTACCTTCTCTCCTCCA  650

seq1  TGCTGTGTGGACACACTGCTGTCCCCCACAACAGCCCCAGGTCAGTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTGGACACACTGCTGTCCCCCACAACAGCCCCAGGTCAGTGGGT  700

seq1  AAACTGTAACCCAAGAAGTTCTGCACATAGCAGACATGTGACCCCATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTAACCCAAGAAGTTCTGCACATAGCAGACATGTGACCCCATGTC  750

seq1  CTGTGAGCACCCATGGGAAGCCATGCCTGCTCTCCATTTCCATGGAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCACCCATGGGAAGCCATGCCTGCTCTCCATTTCCATGGAGATC  800

seq1  CTGAAGAGACTGAGAAGGAAGAGGAGCCCACTGCCGGAAAGGCTATAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGACTGAGAAGGAAGAGGAGCCCACTGCCGGAAAGGCTATAGCC  850

seq1  AAGGAGTTTCAGGGACTGGAGAGATGGCTCAGTTGTCAAGGGCACTGACT  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTTCA-GGACTGGAGAGATGGCTCAGTTGTCAAGGGCACTGACT  899

seq1  GCTTTTCTAGAGGTCCTGAGTTCAATTCCCAATAGTGGAATTAATCCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTAGAGGTCCTGAGTTCAATTCCCAATAGTGGAATTAATCCCAA  949

seq1  GGTTAGTACTTTTAGTGACTAAAGGTTAGTACGT-GGGTCACACATGTTC  999
      ||||||||||||||||||||||  | |||||||| |||||||||||| ||
seq2  GGTTAGTACTTTTAGTGACTAA--GGTAGTACGTGGGGTCACACATGGTC  997

seq1  ATCTGACCCCAGCCATCTGTAATGGGACTGATATCCTCTTCTGGT-GTGT  1048
      |||||| ||||| ||||||| ||||||||||||||||| |||||| ||||
seq2  ATCTGA-CCCAG-CATCTGT-ATGGGACTGATATCCTC-TCTGGTGGTGT  1043

seq1  CTGAAGATA-GTGACAATGTAC-TCACA-TGCATAAAAAAAATTTTTTTT  1095
      |||| |||| |||||||||||| ||||| ||||||||||||| |||||||
seq2  CTGAGGATATGTGACAATGTACTTCACATTGCATAAAAAAAAATTTTTTT  1093

seq1  TAATCCCAAAGA  1107
      | || |||||||
seq2  TTAT-CCAAAGA  1104

seq1: chr15_99830599_99831695
seq2: B6Ng01-342N09.g_72_1162 (reverse)

seq1  GAACCCGC-TCTG-TATTCTAGGCTGGCCTCAGACTCACAACTCTGCCTG  48
      |||||||| |||| ||||||||||||  ||||||||||||||||||||||
seq2  GAACCCGCTTCTGATATTCTAGGCTG--CTCAGACTCACAACTCTGCCTG  48

seq1  CCAAATG-CTGT-GATTAAATGCAACAACCACCCTGTTCCCCTATTC-TT  95
       |||||| |||| |||||||||| ||| |   |||| |||||||||| ||
seq2  ACAAATGCCTGTGGATTAAATGC-ACATC--ACCTG-TCCCCTATTCTTT  94

seq1  TTTTGGGCATCATTTTTTATCCATAAATATTTAATGGTGCAG-ATAATTA  144
      |||||||||||| |||||||||   |||| |||||||||||| |||||||
seq2  TTTTGGGCATCA-TTTTTATCCCATAATA-TTAATGGTGCAGAATAATTA  142

seq1  CAAGTTTA-TGTTTTTGATATAAATATATAAAAAGAAATACAATGTTTTT  193
      |||||||| |||||||||||| ||||||||||||| ||||| ||| ||||
seq2  CAAGTTTATTGTTTTTGATAT-AATATATAAAAAG-AATACCATG-TTTT  189

seq1  AGTTCCCCTGTACTATAATGCATTTTTTTATTCCCATTAGTGTGTTTACT  243
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AG-TCCCCTGTACTATAATGCA-TTTTTTATTCCCATTAGTGTGTTTACT  237

seq1  CTTGTTCAGATACCTGGTATAGCATCGCTAATAAATCAAAGCTTGCTGTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCAGATACCTGGTATAGCATCGCTAATAAATCAAAGCTTGCTGTC  287

seq1  TTTGGTTGCTTGCTTGGTTTCTTTAGATGCCAGCTAAAGTCCTAACAGTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGCTTGCTTGGTTTCTTTAGATGCCAGCTAAAGTCCTAACAGTG  337

seq1  GCTTAGTTGTTGCTGACACAGAATCTATGAAGCCTTGGCTATCCTGGAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTGTTGCTGACACAGAATCTATGAAGCCTTGGCTATCCTGGAAC  387

seq1  TTTCTGTAGACTAGGCTATGCTCAGAATTAAAGAGATCCTCTTGAGATTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAGACTAGGCTATGCTCAGAATTAAAGAGATCCTCTTGAGATTA  437

seq1  AAGCTGGGCCACCACACCTTGTACTGACTGTTTTTAATATTGAGGTAGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGCCACCACACCTTGTACTGACTGTTTTTAATATTGAGGTAGAA  487

seq1  ATAGCTTGATCTAAAATTTCAGATTTTTTTCCCCAAGTTTTTCCACATAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTGATCTAAAATTTCAGATTTTTTTCCCCAAGTTTTTCCACATAT  537

seq1  ATTACTCGATGTGGAAATTACTTAATTTTTGGGATAGCATTTGAAATGTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCGATGTGGAAATTACTTAATTTTTGGGATAGCATTTGAAATGTA  587

seq1  AATGAAGAAAATACCTAATTTAAAAAATTAAAAAAAAAACCATAACATTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAAAATACCTAATTTAAAAAATTAAAAAAAAAACCATAACATTT  637

seq1  ATTTTTGTGTGTGTGTCTTTTTTAGTGTGAAGCCTCATTTTAGGTCATCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTGTGTGTGTCTTTTTTAGTGTGAAGCCTCATTTTAGGTCATCC  687

seq1  AGTGGTTCAGAACACTCAACAGAGGGCTCCGTGTCATTGGGGGATGGACC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTCAGAACACTCAACAGAGGGCTCCGTGTCATTGGGGGATGGACC  737

seq1  ACTGAGCAGATCTAGTTCAAGGATCTTTCTTTCTGAACGGCATAACCCAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAGATCTAGTTCAAGGATCTTTCTTTCTGAACGGCATAACCCAA  787

seq1  CAGTAACAGGGCAGCAGGAACAAACTTATCTTCCAAAGGAGGCTCCCATT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACAGGGCAGCAGGAACAAACTTATCTTCCAAAGGAGGCTCCCATT  837

seq1  TTACAGATGGAACAGAATGGGGACTTTGGAAGAGGCAGGTAAGGACATAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATGGAACAGAATGGGGACTTTGGAAGAGGCAGGTAAGGACATAT  887

seq1  GTGTGTTTAGTTATTTAATTGCCTGACGTGGTTCTCTTTGAGTTCAAGCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTAGTTATTTAATTGCCTGACGTGGTTCTCTTTGAGTTCAAGCC  937

seq1  TAGCTTGGTCTACAAACATAGCCAGAACAGAGAAGCATTCCTCAAAGCAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGGTCTACAAACATAGCCAGAACAGAGAAGCATTCCTCAAAGCAA  987

seq1  GAAGAAGAAAAAAATTAATCATAACATGCTTATCTTGAGTGTTTAAAACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAAAAAATTAATCATAACATGCTTATCTTGAGTGTTTAAAACA  1037

seq1  ATCTGGTGATTTTTATGTTTGTTTGTTTTTAATGTGGTTATCTTAAATGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTGATTTTTATGTTTGTTTGTTTTTAATGTGGTTATCTTAAATGA  1087

seq1  ATTC  1097
      ||||
seq2  ATTC  1091