BAC Information

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BAC

Clone NameB6Ng01-344F19
Chromosome15 (Build37)
Map Location 100,981,813 - 101,120,752
singlet/doubletdoublet
Overlap geneAcvr1b, Grasp, Nr4a1, 9430023L20Rik
Upstream geneDip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1
Downstream gene6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344F19.bB6Ng01-344F19.g
ACCGA126871GA126872
length5491,148
definitionB6Ng01-344F19.b B6Ng01-344F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,981,813 - 100,982,366)(101,119,603 - 101,120,752)
sequence
aatagcacaatgcctttttattcaaatgtagaatgcatacatattcaaaa
caacgttacatccttaacaaggatatgcatatatttcaggacatgaagca
gctcattagagtgttgtggggtgtggggaacaggagagatggagactgaa
atggaactgagaattatatttaagagggagacctgtcaccttatgtaaga
taaggatgccatatgacctcctgattcacccgaggcttgtgtggaggtgg
ggatggcgaggaatccagaccataaagctgagtcttgaatcagccaccct
tgtgctcatgatcaggctggagatggaacagaagcaggcgttctgtgtcc
tccctcaccttgctcaggtggttgcttatgaggcattgtgatcacgaagg
tcactaggcctggccagagctactgttaaacaatgaaccacagcagctgg
gcaagcctgcagtcttgatggtcttggcccttggaaggtacaggctggag
gatcaggatttcaaagccatcttcagctacctaggggggattttgaagc
gaattccaaggacatctggcccaggccatcaccacctgagttcctcagtg
catcctggggaagacacgagagatgagcaggccatggccttagagggttc
tgattctctgaggcctgattcccacaacccagggaactcattttcacctg
taaccaccctgcccactaaacatggcagacagacctagaggaggacttgt
gatggtgacatcaaacactgccagcctgaatggttccctcgaactgaccc
tccttgcccagctccatctctgttaagaagtggtgttgcaagaaatcaaa
tgtgagctgaggggccgatgcacacgcacacaccacacgggacactctca
cacacagtaagtaagtaccgtgttatagccagaggccatgctgtggaact
gctgaagtttggattaaggttatgagaggctatatggagtctgtgacaca
gatatggaaccatctgatgttgtatgtctcaagaaaggaatctggaatgc
caacaaatgtgagaaggaacacggatgcctgtagctttcctcggtttcca
gaaaacagggcagaagacgctcccacaccccggatatttatataaccttg
aaggtgcacccgagagccaggcttccctgctcaactataaacatggaaca
cattaaatgctgcaatgacaaaaaacgagcctctccatgtgtggatgcta
ttgtgcccactgccacgggtccctggtctcctgtttcagttttttttcta
caccaattaattacctctcatgagaactatttggaatagacaggggatgt
ggccttattggaggggtgaaccctggttggaaggggtgtagccttagagg
aggtgggctttgaggtttaaaaaacttgtgccatccccagttctctctcc
gcctcaacctgctgtaagcactcaactactgcccagcaccacgcctgctt
gcctgctgtgtacttctcaccctgatggtgacaaactgatggtcttcaaa
ctaataagccaaacacatctttctactagtgctttggttacagtgtttta
tcacagcaagagaaaagtaagatggaagttggtatcaagagtgggtacct
ctgtgacaggtcttgacatacctgttttaaggaacggtgaagacggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100981813_100982366
seq2: B6Ng01-344F19.b_49_603

seq1  GAATTCAATAGCACAATGCCTTTTTATTCAAATGTAGAATGCATACATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGCACAATGCCTTTTTATTCAAATGTAGAATGCATACATAT  50

seq1  TCAAAACAACGTTACATCCTTAACAAGGATATGCATATATTTCAGGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAACGTTACATCCTTAACAAGGATATGCATATATTTCAGGACAT  100

seq1  GAAGCAGCTCATTAGAGTGTTGTGGGGTGTGGGGAACAGGAGAGATGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCTCATTAGAGTGTTGTGGGGTGTGGGGAACAGGAGAGATGGAG  150

seq1  ACTGAAATGGAACTGAGAATTATATTTAAGAGGGAGACCTGTCACCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATGGAACTGAGAATTATATTTAAGAGGGAGACCTGTCACCTTAT  200

seq1  GTAAGATAAGGATGCCATATGACCTCCTGATTCACCCGAGGCTTGTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATAAGGATGCCATATGACCTCCTGATTCACCCGAGGCTTGTGTGG  250

seq1  AGGTGGGGATGGCGAGGAATCCAGACCATAAAGCTGAGTCTTGAATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGATGGCGAGGAATCCAGACCATAAAGCTGAGTCTTGAATCAGC  300

seq1  CACCCTTGTGCTCATGATCAGGCTGGAGATGGAACAGAAGCAGGCGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGTGCTCATGATCAGGCTGGAGATGGAACAGAAGCAGGCGTTCT  350

seq1  GTGTCCTCCCTCACCTTGCTCAGGTGGTTGCTTATGAGGCATTGTGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCCCTCACCTTGCTCAGGTGGTTGCTTATGAGGCATTGTGATCA  400

seq1  CGAAGGTCACTAGGCCTGGCCAGAGCTACTGTTAAACAATGAACCACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGTCACTAGGCCTGGCCAGAGCTACTGTTAAACAATGAACCACAGC  450

seq1  AGCTGGGCAAGCCTGCAGTCTTGATGGTCTTGGCCCTTGGAAGGTACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCAAGCCTGCAGTCTTGATGGTCTTGGCCCTTGGAAGGTACAGG  500

seq1  CTGGAGGATCAGGAGTTCAAAGCCATCTTCAGCTACCTAGGGGGGA-TTT  549
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  CTGGAGGATCAGGATTTCAAAGCCATCTTCAGCTACCTAGGGGGGATTTT  550

seq1  GAAGC  554
      |||||
seq2  GAAGC  555

seq1: chr15_101119603_101120752
seq2: B6Ng01-344F19.g_68_1215 (reverse)

seq1  TTCCTGTCTTCCACCTTTCC-TAAAACAGTATTGTC-AGACCTGTCACAG  48
      |||| ||||| |||| |||| ||||||||   |||| |||||||||||| 
seq2  TTCC-GTCTT-CACCGTTCCTTAAAACAGGTATGTCAAGACCTGTCACA-  47

seq1  GAGGTACCCACTCCTGGTACCAACTTCTATCTTACTTTTCTCTTGCTGTG  98
      ||||||||||||| || |||||||||| ||||||||||||||||||||||
seq2  GAGGTACCCACTCTTGATACCAACTTCCATCTTACTTTTCTCTTGCTGTG  97

seq1  ATAAAACACTGTAACCAAGGCAACTAGTAGAAGAATGTGTTTGGGCTTA-  147
      |||||||||||||||||| || ||||||||||  |||||||| |||||| 
seq2  ATAAAACACTGTAACCAAAGC-ACTAGTAGAAAGATGTGTTT-GGCTTAT  145

seq1  TAGTTTG-AGACCATCAGTTTGTCACCATCAGGGTGAGGAGTACAACAGC  196
      ||||||| |||||||||||||||||||||||||||||| ||||| |||||
seq2  TAGTTTGAAGACCATCAGTTTGTCACCATCAGGGTGAGAAGTAC-ACAGC  194

seq1  AGGCAAGCAGGCGTGGTGCTGGGGCAGTAGTTGAGTGCTTACAGCAGGTT  246
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGCAAGCAGGCGTGGTGCT-GGGCAGTAGTTGAGTGCTTACAGCAGGTT  243

seq1  GAGGCGGAGAGAGAACTGGGGATGGCACAAGTTTTTTAAACCTCAAAGCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGGAGAGAGAACTGGGGATGGCACAAGTTTTTTAAACCTCAAAGCC  293

seq1  CACCTCCTCTAAGGCTACACCCCTTCCAACCAGGGTTCACCCCTCCAATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTCTAAGGCTACACCCCTTCCAACCAGGGTTCACCCCTCCAATA  343

seq1  AGGCCACATCCCCTGTCTATTCCAAATAGTTCTCATGAGAGGTAATTAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACATCCCCTGTCTATTCCAAATAGTTCTCATGAGAGGTAATTAAT  393

seq1  TGGTGTAG-AAAAAAACTGAAACAGGAGACCAGGGACCCGTGGCAGTGGG  445
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAGAAAAAAAACTGAAACAGGAGACCAGGGACCCGTGGCAGTGGG  443

seq1  CACAATAGCATCCACACATGGAGAGGCTCGTTTTTTGTCATTGCAGCATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGCATCCACACATGGAGAGGCTCGTTTTTTGTCATTGCAGCATT  493

seq1  TAATGTGTTCCATGTTTATAGTTGAGCAGGGAAGCCTGGCTCTCGGGTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTTCCATGTTTATAGTTGAGCAGGGAAGCCTGGCTCTCGGGTGC  543

seq1  ACCTTCAAGGTTATATAAATATCCGGGGTGTGGGAGCGTCTTCTGCCCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAAGGTTATATAAATATCCGGGGTGTGGGAGCGTCTTCTGCCCTG  593

seq1  TTTTCTGGAAACCGAGGAAAGCTACAGGCATCCGTGTTCCTTCTCACATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGAAACCGAGGAAAGCTACAGGCATCCGTGTTCCTTCTCACATT  643

seq1  TGTTGGCATTCCAGATTCCTTTCTTGAGACATACAACATCAGATGGTTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCATTCCAGATTCCTTTCTTGAGACATACAACATCAGATGGTTCC  693

seq1  ATATCTGTGTCACAGACTCCATATAGCCTCTCATAACCTTAATCCAAACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTGTCACAGACTCCATATAGCCTCTCATAACCTTAATCCAAACT  743

seq1  TCAGCAGTTCCACAGCATGGCCTCTGGCTATAACACGGTACTTACTTACT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTTCCACAGCATGGCCTCTGGCTATAACACGGTACTTACTTACT  793

seq1  GTGTGTGAGAGTGTCCCGTGTGGTGTGTGCGTGTGCATCGGCCCCTCAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAGAGTGTCCCGTGTGGTGTGTGCGTGTGCATCGGCCCCTCAGC  843

seq1  TCACATTTGATTTCTTGCAACACCACTTCTTAACAGAGATGGAGCTGGGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTGATTTCTTGCAACACCACTTCTTAACAGAGATGGAGCTGGGC  893

seq1  AAGGAGGGTCAGTTCGAGGGAACCATTCAGGCTGGCAGTGTTTGATGTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGTCAGTTCGAGGGAACCATTCAGGCTGGCAGTGTTTGATGTCA  943

seq1  CCATCACAAGTCCTCCTCTAGGTCTGTCTGCCATGTTTAGTGGGCAGGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACAAGTCCTCCTCTAGGTCTGTCTGCCATGTTTAGTGGGCAGGGT  993

seq1  GGTTACAGGTGAAAATGAGTTCCCTGGGTTGTGGGAATCAGGCCTCAGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAGGTGAAAATGAGTTCCCTGGGTTGTGGGAATCAGGCCTCAGAG  1043

seq1  AATCAGAACCCTCTAAGGCCATGGCCTGCTCATCTCTCGTGTCTTCCCCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAACCCTCTAAGGCCATGGCCTGCTCATCTCTCGTGTCTTCCCCA  1093

seq1  GGATGCACTGAGGAACTCAGGTGGTGATGGCCTGGGCCAGATGTCCTTGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCACTGAGGAACTCAGGTGGTGATGGCCTGGGCCAGATGTCCTTGG  1143

seq1  AATTC  1150
      |||||
seq2  AATTC  1148