BAC Information

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BAC

Clone NameB6Ng01-344P14
Chromosome15 (Build37)7 (Build37)
Map Location 37,327,207 - 37,327,43848,812,816 - 48,813,331
singlet/doubletsingletsinglet
Overlap geneNcald
Upstream geneEG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz, Zfp706, LOC670911, LOC667492, LOC100041288, Grhl2
Downstream geneLOC667498, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1, Odf1, LOC382986, LOC667563, Klf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344P14.bB6Ng01-344P14.g
ACCGA127321GA127322
length232999
definitionB6Ng01-344P14.b B6Ng01-344P14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,327,207 - 37,327,438)(48,812,816 - 48,813,331)
sequence
aactgcaaagagaaaggaaaatacatatgttttttagagcggtcctttag
ggtcatgcgatcatgtagtattgttccttgagaagagggaaaatctaaca
aactctctactagcccaatagctagaccaaatgatagcaaaacaggccag
tcagagatgcagaaagccatgttgctaaccagaccagtcagaaagcaaga
tatggatggatggatggatggatggatggatg
gaattctatgcaaatgcacaatatcaccgggaatctggacatactaatga
ggctgcaaaaacaatcaggctgtgtgtcacaggctttgctgggttaaata
ggattctagtcattagaaaggggttcctttgctttgattagtaatatcaa
caaaattctaatgaggaaaacagaaaccatgttcgctgagtcaaacaaag
gaggtttaattggaacctgcaagaagcaacccaagcggaaagaggacagg
gtggagggtagtgcgtccactgctgaagaacaagaccatagagaaggtgt
tttggggcaggccagaatctgcctgtactggctagttttgtgtcaacttg
acacagctggagttatcacagagaaaggagcttcagttgaggaaatgcct
ccatgagatccaactgtaagacattttctcaattagtgatcaagggggaa
aggccccttgtgggtgggaccatctctggactggtaatcttgggttctat
aagagagcaggctgagcaagccaggggaagcaagccagtaaagagcatcc
ctccatggcctctgcatcagctcctgcttcctgacctgcttgagttccag
ttctgacttccttggtgatgaacagcaagatggaagtgtaagccgaataa
accctttcctccccaacttgcttcttggtcatgatgtttgtgcaggaata
gaaaccctgactaagacactgcccaactgtccagtctctgtttcttttct
ttgtatgtctgtttgttgttgttgtttgtttgtttgtttgtttatttagt
ttttcaagacagggtttctttgtatagctctggttgtcccagaactcact
ctgtagttcaaggctggcctcaaactcagaaattcacctgcctctgcttc
ccaagtgctggggattaaagccatgcgccaccactgcccggctgtttttt
gttttttcaagacagagtttctctcttttagccctgactatccagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_37327207_37327438
seq2: B6Ng01-344P14.b_58_289

seq1  AACTGCAAAGAGAAAGGAAAATACATATGTTTTTTAGAGCGGTCCTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAAAGAGAAAGGAAAATACATATGTTTTTTAGAGCGGTCCTTTAG  50

seq1  GGTCATGCGATCATGTAGTATTGTTCCTTGAGAAGAGGGAAAATCTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGCGATCATGTAGTATTGTTCCTTGAGAAGAGGGAAAATCTAACA  100

seq1  AACTCTCTACTAGCCCAATAGCTAGACCAAATGATAGCAAAACAGGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTACTAGCCCAATAGCTAGACCAAATGATAGCAAAACAGGCCAG  150

seq1  TCAGAGATGCAGAAAGCCATGTTGCTAACCAGACCAGTCAGAAAGCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATGCAGAAAGCCATGTTGCTAACCAGACCAGTCAGAAAGCAAGA  200

seq1  TATGGATGGATGGATGGATGGATGGATGGATG  232
      ||||||||||||||||||||||||||||||||
seq2  TATGGATGGATGGATGGATGGATGGATGGATG  232

seq1: chr7_48812816_48813331
seq2: B6Ng01-344P14.g_391_885 (reverse)

seq1  GAAACCCTGTCTTGAAAAACCAAAAAGATTTTTCTTTTTGGTTTTTCAAG  50
      |||||||||||||||||||| ||| | |                  ||| 
seq2  GAAACCCTGTCTTGAAAAACTAAATAAA------------------CAA-  31

seq1  ACAGGGTTTAAAAAAGAAA-AAGAATTCCTAAAAGGCTGA-----AAAAG  94
      |||      || ||| ||| || ||   | || || |  |     |||||
seq2  ACA------AACAAACAAACAACAACAACAAACAGACATACAAAGAAAAG  75

seq1  CAGCTGTTCTAGAATTCACA---TGCCTCTGTCTTAGTCAGGGTTTCTAT  141
       | | |    ||| |  |||    | |  |||||||||||||||||||||
seq2  AAACAG----AGACTGGACAGTTGGGCAGTGTCTTAGTCAGGGTTTCTAT  121

seq1  TACTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTA  191
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTA  171

seq1  TTTGGCTTACACTTCCATACTGCTGTTCATCACCAAGGAAGTCAGGACTG  241
      || |||||||||||||||  ||||||||||||||||||||||||| ||||
seq2  TTCGGCTTACACTTCCATCTTGCTGTTCATCACCAAGGAAGTCAGAACTG  221

seq1  GAACTTAAGCAGGTCAGGAAGCAGCAACTGGTGCAGAGGCCATGGAGGGA  291
      ||||| |||||||||||||||||| | ||| |||||||||||||||||||
seq2  GAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGA  271

seq1  TGTTCCTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATA  341
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATA  321

seq1  GAA-CCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTC  390
      ||| |||||| |||||| ||||||||||||||||||||||||||||||||
seq2  GAACCCAAGATTACCAGTCCAGAGATGGTCCCACCCACAAGGGGCCTTTC  371

seq1  CCCCTTGATCACTAATTGAGAAAATGCCTTACAATTGGATCTCATGGAGG  440
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  CCCCTTGATCACTAATTGAGAAAATGTCTTACAGTTGGATCTCATGGAGG  421

seq1  CATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTACGTCAA  490
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  CATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAA  471

seq1  GTTGACACACAAAACCAGCCAGTACA  516
      ||||  ||||||||| ||||||||||
seq2  GTTG--ACACAAAACTAGCCAGTACA  495