BAC Information

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BAC

Clone NameB6Ng01-345M19
Chromosome3 (Build37)15 (Build37)
Map Location 40,096,473 - 40,096,96748,370,221 - 48,371,271
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345M19.bB6Ng01-345M19.g
ACCGA127881GA127882
length9731,082
definitionB6Ng01-345M19.b B6Ng01-345M19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,096,473 - 40,096,967)(48,370,221 - 48,371,271)
sequence
gaattctctatttagttcaataccccatttttttgattgggttgtttgtt
tctttggtgattaccttcttgagttctttatatattttggatattagtcc
tctatcagatatgagattagtgaagtttttttttttcctgatctgtaggt
tgtcagtttttctttttctttttttaatttcttttatttatttatttatt
tatttatttatttatttatttatttatttggtattttcctcatttacatt
tccaatgctaccccaaaagtcccccatacccccccactcccgtacctacc
cattcccactttttggccctggcattcccctgtactggggtatataaagt
ttgcaagtccaatgggcctctctttccagtgatgactgactaggccatct
tttgatacatatgcaggtaaagacaagagctccggggtactggttagttc
ataatgttgttccacctatagggttgtagatccctttagctccttgagta
ttttctctagctcctccattggggaccctgtgatccatccaatagctgac
tgtgagcatccacttatgtgtttgctaggccccggcgtagtctcactcga
gacagctatatcagggtcctatcagcacaatcttgctagtgtatgcaata
atgtcagcgtttggaggctgattatgggatggatccctggtgtactttta
aaacagtagataattggcctttctgatgtgcttctttccttatatcttac
aatagtcactaaatttgattgttaacctcattgaatcgtttcgaaacacg
ctcattttcgaactgccacattacaaattagtttttaaaaaattcatcat
aacttccagtatcagaatagtttggataaacccgtgaactcatttaaatt
cagcaaaactaatagggagactgtacagaaaatccaaagtaatatgattt
aatctctaattttgtcatttact
gaattccctatggtgggctttttaaaagctttttagtggcaactgtgatt
tttccttttggctcaaacctcaaaatgtaatcagaaaactattaggaaga
cccaaagtattgtgccactaatgtgacaatctacacatcttgcctgactt
gtgtagttggtatggtcttattcaagtactgagaataagtgctgttgaga
gtacaggtctgaatagggcatttaaaacgtgtattcaatgtgaacaccat
atgagagcataagaagaatgttgaaggagaaggatggggaaaagtagtgt
ggaacactgtcttcagggcagggcatggatgttcaactcatgaaatcata
gcagctgtggtaaactgcagaagattggatatgttcacatttattaacaa
gtgggagatggtgttactagccatccctggttattttttatctattggca
gttaatgatgtggaaggagagggatcttttgtagttatgtagacactggt
aaataaggtccattgttctggtaaatatgctccattgcccacctaaaaat
aattaaacgggtaggtttcacatatacatacaaaagcctgagagtatgga
atataataaaaatacattaatacacacatataaatttataatatatatat
gtgtatatatatacatacatatacgtacatatatatatatgtatgtatgt
atgtatataatctgtggataatttcattggttactatgcttttcatctac
agtcctgtgcttgaggaaaagtattctatatgggtagttgtacactcata
cctaacactaatcaggaaaggaattagagaaacacaccccaatagactgt
tgaaatttcatcatgataggaaagaaagtgcagatcgaacaatgttgatc
tcctgaatttctgagggcaagactaatgtatagagttaaagcttagaact
ttgcagacatttaaacttgaaccattatgatgctaaatgtattatatttc
ttcatgaaatagtatttatagcatcagtttaaaatataaagtatacctat
cacaaaaaatattgtgctaatttctatgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40096473_40096967
seq2: B6Ng01-345M19.b_203_719 (reverse)

seq1  AATCAGCTTCCAAACGATGACACCATTGCATACACTAGCAAGATTTTGCT  50
      ||||||| |||||||| |||||  ||||||||||||||||||||| ||||
seq2  AATCAGCCTCCAAACGCTGACATTATTGCATACACTAGCAAGATTGTGCT  50

seq1  GAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGC  100
      || ||||||||||||||||||||||  ||||||||| |||||||||||||
seq2  GATAGGACCCTGATATAGCTGTCTCGAGTGAGACTACGCCGGGGCCTAGC  100

seq1  AAACACAGAAGTGGATGCTCACAGTCAGCTATTAGATGGATCACAGGACC  150
      ||||||| ||||||||||||||||||||||||| |||||||||||||  |
seq2  AAACACATAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGTC  150

seq1  CCCAATGGAGGAGCTAGAGGAAGTATCCAAGGAGCTAAAGAGATCTGCAA  200
      ||||||||||||||||||| || ||  ||||||||||||| ||||| |||
seq2  CCCAATGGAGGAGCTAGAGAAAATACTCAAGGAGCTAAAGGGATCTACAA  200

seq1  CCCTGGAGGTGCAACAACATTATGAACTAACCAATACCCCGGAGCTCTTG  250
      ||||  ||||| ||||||||||||||||||||| ||||||||||||||||
seq2  CCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTG  250

seq1  ACTTTAGCTGCATATGTATCAAAAGATGGCCTAGTAAGCCATCACTGGAA  300
       ||||| |||||||||||||||||||||||||||| || |||||||||||
seq2  TCTTTACCTGCATATGTATCAAAAGATGGCCTAGTCAGTCATCACTGGAA  300

seq1  AGAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAAC  350
      ||||||||||||||||| |||||||||||||| |||||||||||||||| 
seq2  AGAGAGGCCCATTGGACTTGCAAACTTTATATACCCCAGTACAGGGGAAT  350

seq1  GCCAGGGCCAAAAAGTGGGAATGGGTGGATAGGGGAGTGGGGAGAGGGTA  400
      |||||||||||||||||||||||||| | || ||||||||||   |||||
seq2  GCCAGGGCCAAAAAGTGGGAATGGGTAGGTACGGGAGTGGGG---GGGTA  397

seq1  TTTGGGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATACGTAA  450
      |  |||||||||||| ||||||||||||||||| ||||||||||||  ||
seq2  TGGGGGACTTTTGGGGTAGCATTGGAAATGTAAATGAGGAAAATACCAAA  447

seq1  TAAA-------------------------AAATATATTTAAAAAAGAATA  475
      ||||                         ||||| ||  | |||||||  
seq2  TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAGAAAT  497

seq1  TAAAAAAAGAAAAAGAAAAA  495
      ||||||||||||||||||||
seq2  TAAAAAAAGAAAAAGAAAAA  517

seq1: chr15_48370221_48371271
seq2: B6Ng01-345M19.g_101_1146

seq1  TGGCAACTGTGATTTTTCCTTTTGGCTCAAACCTCAAAATGTAATCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACTGTGATTTTTCCTTTTGGCTCAAACCTCAAAATGTAATCAGAA  50

seq1  AACTATTAGGAAGACCCAAAGTATTGTGCCACTAATGTGACAATCTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTAGGAAGACCCAAAGTATTGTGCCACTAATGTGACAATCTACAC  100

seq1  ATCTTGCCTGACTTGTGTAGTTGGTATGGTCTTATTCAAGTACTGAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCTGACTTGTGTAGTTGGTATGGTCTTATTCAAGTACTGAGAAT  150

seq1  AAGTGCTGTTGAGAGTACAGGTCTGAATAGGGCATTTAAAACGTGTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGTTGAGAGTACAGGTCTGAATAGGGCATTTAAAACGTGTATTC  200

seq1  AATGTGAACACCATATGAGAGCATAAGAAGAATGTTGAAGGAGAAGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAACACCATATGAGAGCATAAGAAGAATGTTGAAGGAGAAGGATG  250

seq1  GGGAAAAGTAGTGTGGAACACTGTCTTCAGGGCAGGGCATGGATGTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGTAGTGTGGAACACTGTCTTCAGGGCAGGGCATGGATGTTCAA  300

seq1  CTCATGAAATCATAGCAGCTGTGGTAAACTGCAGAAGATTGGATATGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAAATCATAGCAGCTGTGGTAAACTGCAGAAGATTGGATATGTTC  350

seq1  ACATTTATTAACAAGTGGGAGATGGTGTTACTAGCCATCCCTGGTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATTAACAAGTGGGAGATGGTGTTACTAGCCATCCCTGGTTATTT  400

seq1  TTTATCTATTGGCAGTTAATGATGTGGAAGGAGAGGGATCTTTTGTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTATTGGCAGTTAATGATGTGGAAGGAGAGGGATCTTTTGTAGTT  450

seq1  ATGTAGACACTGGTAAATAAGGTCCATTGTTCTGGTAAATATGCTCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACACTGGTAAATAAGGTCCATTGTTCTGGTAAATATGCTCCATT  500

seq1  GCCCACCTAAAAATAATTAAACGGGTAGGTTTCACATATACATACAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCTAAAAATAATTAAACGGGTAGGTTTCACATATACATACAAAAG  550

seq1  CCTGAGAGTATGGAATATAATAAAAATACATTAATACACACATATAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGTATGGAATATAATAAAAATACATTAATACACACATATAAATT  600

seq1  TATAATATATATATGTGTATATATATACATACATATACGTACATATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATATATATGTGTATATATATACATACATATACGTACATATATAT  650

seq1  ATATGTATGTATGTATGTATATAATCTGTGGATAATTTCATTGGTTACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATGTATGTATGTATATAATCTGTGGATAATTTCATTGGTTACTA  700

seq1  TGCTTTTCATCTACAGTCCTGTGCTTGAGGAAAAGTATTCTATATGGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCATCTACAGTCCTGTGCTTGAGGAAAAGTATTCTATATGGGTA  750

seq1  GTTGTACACTCATACCTAACACTAATCAGG-AAGGAATTAGAGAAACACA  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTGTACACTCATACCTAACACTAATCAGGAAAGGAATTAGAGAAACACA  800

seq1  CCCCAATAGACTGTTGAAA-TTCATCATGATAGGAAAGAAAGTGCAGACC  848
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  CCCCAATAGACTGTTGAAATTTCATCATGATAGGAAAGAAAGTGCAGATC  850

seq1  GAACAATGTTGATCTCCTGAATTTCTGAGGGCAAGACTAATGTATAGAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGTTGATCTCCTGAATTTCTGAGGGCAAGACTAATGTATAGAGT  900

seq1  TAAAGCTTAGAACTTTGCAGACATTAAACCTTGAACCATTATGAATGCTA  948
      ||||||||||||||||||||||||| || |||||||||||||| ||||||
seq2  TAAAGCTTAGAACTTTGCAGACATTTAAACTTGAACCATTATG-ATGCTA  949

seq1  AATGTAATTATATTTCCTTCATGAAATAAGTAATTTTATAGCATCAGTTT  998
      ||||| ||||||||| ||||||||||| ||||  ||||||||||||| ||
seq2  AATGT-ATTATATTT-CTTCATGAAAT-AGTA--TTTATAGCATCAG-TT  993

seq1  TAAAATATAAAGTATAACTATCACAAAAAATATTGTGCCAAATTCTATGA  1048
      |||||||||||||||| ||||||||||||||||||||| || ||||||||
seq2  TAAAATATAAAGTATACCTATCACAAAAAATATTGTGCTAATTTCTATGA  1043

seq1  GAA  1051
      |||
seq2  GAA  1046