BAC Information

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BAC

Clone NameB6Ng01-346N21
Chromosome15 (Build37)
Map Location 16,273,268 - 16,274,249
singlet/doubletsinglet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneLOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346N21.bB6Ng01-346N21.g
ACCGA128644GA128645
length712982
definitionB6Ng01-346N21.b B6Ng01-346N21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatgaggtcccatttgtctattgttgatcttagagcataaacca
ttggtgttctgttcaggaaaatttccttgtgcccatgtgttcaaggcttt
ttaccactttctgttctagtagattcagtatatatggttttatgtggagg
tccttgatctacttggacttaagctttgtacaaggagataagaatgggta
aattcacattcttctacatgctaacctccagttgaatcagtaacatttgt
tgtaaatccagtcttttttccactggatggttttagctctttgtcaaaga
tcaagtgactataggtgactgtaggtgaccataggtttttgctattctgt
tttttgttgttgttgtgttattccaaatgaatttgcaaattgctttttct
aactctattaagaattgagttggaattttgatgggaattgcattgaatct
gtagactgcttttggtaaaatggatatcttaactatattaatcctgccaa
tccctgagtatgggagatctttccatcttctcaggtcttcttccatttct
ttcttcagggacttaaagttcatgtcatacagatctttcacttgtttaat
tagagtcccactaagatatttcatactgtttgtgactattgtgaaggttg
tcatttcccctaattttatctcaacctgtttatcctttgagtaaaggaag
gctattgatttg

gaattcaagtaagattaactgttatagacagtacatttttatattagtaa
ttttataataaacttaaatatgttatctgctaccaaattgtaatggttga
ttaatcatgcatggttttctattcttaataattttaattagtttcagatg
atatctgtgactttatttgtgctccataaaataaaattgtgataataatt
ttactatttataataatataaatcatattgtgactattttaaatcacaca
aatagaaaattatgttgtatttaaacagtctctacatatgcatccaacac
agactttacatatattaaatttaaaatactagtaaattctttataatgct
tacgataatttcattgctatgcaaattacatgaaagaaaaaatgaaaata
atgcctaaaataaaaagaaattgttgcaaaaccttttggatcaatgtgtt
ctttataaaggagaatcctcgtattctaattaaaattgctggacaatggt
ggcgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttc
tgagtttgaggccagcttggtctacaaagtgagttccaggacagccaggg
ctgtacagagagaccctgtcttgaaaaacaaaaaacaaaacaaaacaaaa
aatccaattaaaattatcattaacagatggtgcagggagtcagcattttt
taatgtaagcacttgaacctgtgtttgaatcctcaggacccacatagtta
gtctggcctcgctgcatgtaagagtaacctctgtgtttgtttgttttgtt
tcgttttgttcagacttaggttggtcatggtaactccatgacaggccccg
cctcgtgaatacattgaacttcccggcttggtgaaaaatgtgccttaatt
ttagagaataacaggctaagcccaaatgttcctttgttctttctggattc
acatgcactatatatgcatgccccaccctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16273268_16274249
seq2: B6Ng01-346N21.g_65_1046

seq1  GAATTCAAGTAAGATTAACTGTTATAGACAGTACATTTTTATATTAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTAAGATTAACTGTTATAGACAGTACATTTTTATATTAGTAA  50

seq1  TTTTATAATAAACTTAAATATGTTATCTGCTACCAAATTGTAATGGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAATAAACTTAAATATGTTATCTGCTACCAAATTGTAATGGTTGA  100

seq1  TTAATCATGCATGGTTTTCTATTCTTAATAATTTTAATTAGTTTCAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATGCATGGTTTTCTATTCTTAATAATTTTAATTAGTTTCAGATG  150

seq1  ATATCTGTGACTTTATTTGTGCTCCATAAAATAAAATTGTGATAATAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTGACTTTATTTGTGCTCCATAAAATAAAATTGTGATAATAATT  200

seq1  TTACTATTTATAATAATATAAATCATATTGTGACTATTTTAAATCACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTTATAATAATATAAATCATATTGTGACTATTTTAAATCACACA  250

seq1  AATAGAAAATTATGTTGTATTTAAACAGTCTCTACATATGCATCCAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAATTATGTTGTATTTAAACAGTCTCTACATATGCATCCAACAC  300

seq1  AGACTTTACATATATTAAATTTAAAATACTAGTAAATTCTTTATAATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTACATATATTAAATTTAAAATACTAGTAAATTCTTTATAATGCT  350

seq1  TACGATAATTTCATTGCTATGCAAATTACATGAAAGAAAAAATGAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATAATTTCATTGCTATGCAAATTACATGAAAGAAAAAATGAAAATA  400

seq1  ATGCCTAAAATAAAAAGAAATTGTTGCAAAACCTTTTGGATCAATGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAAAATAAAAAGAAATTGTTGCAAAACCTTTTGGATCAATGTGTT  450

seq1  CTTTATAAAGGAGAATCCTCGTATTCTAATTAAAATTGCTGGACAATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAAGGAGAATCCTCGTATTCTAATTAAAATTGCTGGACAATGGT  500

seq1  GGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTC  550

seq1  TGAGTTTGAGGCCAGCTTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGAGGCCAGCTTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGG  600

seq1  CTGTACAGAGAGACCCTGTCTTGAAAAACAAAAAACAAAACAAAACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGAGAGACCCTGTCTTGAAAAACAAAAAACAAAACAAAACAAAA  650

seq1  AATCCAATTAAAATTATCATTAACAGATGGTGCAGGGAGTCAGCATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAATTAAAATTATCATTAACAGATGGTGCAGGGAGTCAGCATTTTT  700

seq1  TAATGTAAGCACTTGAACCTGTGTTTGAATCCTCAGGACCCACATAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAAGCACTTGAACCTGTGTTTGAATCCTCAGGACCCACATAGTTA  750

seq1  GTCTGGCCTCGCTGCATGTAAGAGTAACCTCTGTGTTTGTTTGTTTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCTGGCCTCGCTGCATGTAAGAGTAACCTCTGTGTTTGTTTG-TTTTGT  799

seq1  TTCGTTTTG-TCAGACTTAGGTTGGTCATGGTAACTCCATGACAGG-CCC  848
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  TTCGTTTTGTTCAGACTTAGGTTGGTCATGGTAACTCCATGACAGGCCCC  849

seq1  GCCTCGTGAATACATTGAACTT-CCGGCTTGGTGAAAAATGTTGCCTTAT  897
      |||||||||||||||||||||| |||||||||||||||||| ||||||| 
seq2  GCCTCGTGAATACATTGAACTTCCCGGCTTGGTGAAAAATG-TGCCTTAA  898

seq1  TTTTAGAGAATAACAGGCTAAGCCC-AATGTT-CTTTGTTCTTTTCTGGA  945
      ||||||||||||||||||||||||| |||||| |||||||| ||||||||
seq2  TTTTAGAGAATAACAGGCTAAGCCCAAATGTTCCTTTGTTC-TTTCTGGA  947

seq1  TTCCACATGCACTATATATGCATGCACCACACCTCAA  982
      || |||||||||||||||||||||| |||| ||||||
seq2  TT-CACATGCACTATATATGCATGCCCCAC-CCTCAA  982


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