BAC Information

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BAC

Clone NameB6Ng01-349K20
Chromosome15 (Build37)
Map Location 17,123,579 - 17,268,668
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC624183, LOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349K20.bB6Ng01-349K20.g
ACCGA130599GA130600
length1,2051,132
definitionB6Ng01-349K20.b B6Ng01-349K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,123,579 - 17,124,774)(17,267,534 - 17,268,668)
sequence
gaattcagttttgtttgcatgttagtatgattctatagaaaatttagtga
taatatttgtgatggtttgtatattcctggaccagggagtaacaccattt
ggaggtgtggccttgatggaataggtgtgacctggttggagtaggtatgt
cactgtgggtgtgggcttaaggctctcaccccagttgcctggaagtcagt
cttccactagcagcctttggatgaagatatagaactctcagctccttttg
cgccatgcctgactggatgctgccatgctcccaccttgatgataatggac
tgaacctctgaacctataagccaggcccaattaaatgttgttttttataa
gacttgccttggtcatggtgtctgttcacagcagtaaaacccctagctaa
gacaatattattttcaaaagttcaataacttagtagtgactataataagg
attactgtccacgctctattggacatatggttgaagaaatttgtaataat
tttaaacaaatgaccctataatgtagagacaatgcctacaaacagtggaa
tggataaatgcaaagaatataatattgataattttactgttataatattc
ataagaaaacaaattttagtaaaataaacaaataaaattgtaaaatgaaa
tgtgtgaaagagaaatatttagtcaagacctgtttataacatttttcata
aatattaattattttaaatatgtgttaattataaattttgtcagcaaagt
aactttattaatgacatgaacacattaaaatattctatttttcattttct
acattttttttcctcctagaataaaggttaaattgaaagaaaaaattagt
gtgaaagaaaattagtattttaaaattattatacaaattaaacttctgcc
caacctgtacaattttatctttcatttgataataaaaatattatttataa
agtaacagtacagtttggaagaatatccaataagttatagatgagttatg
tttacctctagattaatattttgtatatattctagaactgcacataatta
tgtttggaatacatggtatacaaatgttttcatgcccataaaaggattag
ctagtgatcttacttttttgtccacttaatttaatatctattaatacttt
taactcacaacagaggaaaaagtgtgttgaggtgttaataaccattacag
atttc

gaattcttcctttctcatcttccttcattctaaggaatcctctgtgagat
atcatggaaattcctatcactcaaattctcataccagaaaatgaatgtgt
cagtttggaagaaactgctatgtggataaatattgggtagaaaaaaggaa
aagagaaggttaatattgctcttcatacttcatatatatctatatatctc
tgtatatttatatagatatgtatatatgtttgagtgtgtatacatattct
tagatataatatctctgtgttatatatttttgtatatgtaaatatattat
atattttatattttatatcatatatttatatattcttatttaacaacaga
aaatatacttctagcctcttagctcattagtttgggtgagtggtcatcac
agattatgttcctcagattctatagaaaattgtggctgtggtgaaagttt
tcaagtatttctgtaccaatttgtcttgtttacactctctgaggcagttt
ctgcaacttctaaaaatattctgtggcttctgaaaaaagaaccctgactc
caaaaggaaagaggaaattactagcttgttgaaaagaacaacagagagat
gaattaaattgcttttccaggaacagcacaatataattacatactaaagg
gttaaggtgaacaacacatttagtaggcagagtacttcaatgctgcccaa
caaaacctacaatattggtggattaagataaaagtaaactaatcattatc
tataattggtcactttatagaaaataaacgaatatattctaagccattat
ttgagtagcactgttaaattttattttactcttaaaaaaaaaactcactg
ctagagattttattcaggcaagcacttctctttaaaaagtgttcaggata
aatccttgaacgaagttctaatctattttttatatatttcacagtgtact
gtgacattgctgttttctaagaatgtttgttttatgtatgtaaatacact
gcctcctatctcagtcacaccagaaaggagcatcagatcacattacaaat
ggcttgtggctaccgtgtgatgctgggaatttgagtggaaagatgtctgc
agataactagtgctctttactgctgagccatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17123579_17124774
seq2: B6Ng01-349K20.b_45_1249

seq1  GAATTCAGTTTTGTTTGCATGTTAGTATGATTCTATAGAAAATTTAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTGTTTGCATGTTAGTATGATTCTATAGAAAATTTAGTGA  50

seq1  TAATATTTGTGATGGTTTGTATATTCCTGGACCAGGGAGTAACACCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTGTGATGGTTTGTATATTCCTGGACCAGGGAGTAACACCATTT  100

seq1  GGAGGTGTGGCCTTGATGGAATAGGTGTGACCTGGTTGGAGTAGGTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGTGGCCTTGATGGAATAGGTGTGACCTGGTTGGAGTAGGTATGT  150

seq1  CACTGTGGGTGTGGGCTTAAGGCTCTCACCCCAGTTGCCTGGAAGTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGGTGTGGGCTTAAGGCTCTCACCCCAGTTGCCTGGAAGTCAGT  200

seq1  CTTCCACTAGCAGCCTTTGGATGAAGATATAGAACTCTCAGCTCCTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACTAGCAGCCTTTGGATGAAGATATAGAACTCTCAGCTCCTTTTG  250

seq1  CGCCATGCCTGACTGGATGCTGCCATGCTCCCACCTTGATGATAATGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATGCCTGACTGGATGCTGCCATGCTCCCACCTTGATGATAATGGAC  300

seq1  TGAACCTCTGAACCTATAAGCCAGGCCCAATTAAATGTTGTTTTTTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCTGAACCTATAAGCCAGGCCCAATTAAATGTTGTTTTTTATAA  350

seq1  GACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCCTAGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCCTAGCTAA  400

seq1  GACAATATTATTTTCAAAAGTTCAATAACTTAGTAGTGACTATAATAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATATTATTTTCAAAAGTTCAATAACTTAGTAGTGACTATAATAAGG  450

seq1  ATTACTGTCCACGCTCTATTGGACATATGGTTGAAGAAATTTGTAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTCCACGCTCTATTGGACATATGGTTGAAGAAATTTGTAATAAT  500

seq1  TTTAAACAAATGACCCTATAATGTAGAGACAATGCCTACAAACAGTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAATGACCCTATAATGTAGAGACAATGCCTACAAACAGTGGAA  550

seq1  TGGATAAATGCAAAGAATATAATATTGATAATTTTACTGTTATAATATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAATGCAAAGAATATAATATTGATAATTTTACTGTTATAATATTC  600

seq1  ATAAGAAAACAAATTTTAGTAAAATAAACAAATAAAATTGTAAAATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAACAAATTTTAGTAAAATAAACAAATAAAATTGTAAAATGAAA  650

seq1  TGTGTGAAAGAGAAATATTTAGTCAAGACCTGTTTATAACATTTTTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAAAGAGAAATATTTAGTCAAGACCTGTTTATAACATTTTTCATA  700

seq1  AATATTAATTATTTTAAATATGTGTTAATTATAAATTTTGTCAGCAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAATTATTTTAAATATGTGTTAATTATAAATTTTGTCAGCAAAGT  750

seq1  AACTTTATTAATGACATGAACACATTAAAATATTCTATTTTTCATTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATTAATGACATGAACACATTAAAATATTCTATTTTTCATTTTCT  800

seq1  ACA-TTTTTTTCCTCCTAGAAT-AAGGTTAAATTGAAAGAAAAAATTAGT  848
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACATTTTTTTTCCTCCTAGAATAAAGGTTAAATTGAAAGAAAAAATTAGT  850

seq1  GTGAAAGAAAATTAGTATTTTAAAATTATTATACAAATTAAACTTCTGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGAAAATTAGTATTTTAAAATTATTATACAAATTAAACTTCTGCC  900

seq1  CAACCTGTACAATTTTATCTTTCATTTGATAATAAAAATATTATTTATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGTACAATTTTATCTTTCATTTGATAATAAAAATATTATTTATAA  950

seq1  AGTAACAGTACAGTTTGGAAGAATATCCAATAAGTTATAGATGAGTTATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGTACAGTTTGGAAGAATATCCAATAAGTTATAGATGAGTTATG  1000

seq1  TTTACCTCTAGATTTAATATTTTGTTATATATTCTAGAACTGCACCATAA  1048
      |||||||||||| ||||||||||| ||||||||||||||||||| |||||
seq2  TTTACCTCTAGA-TTAATATTTTG-TATATATTCTAGAACTGCA-CATAA  1047

seq1  -TATGTTTGG-ATACATGGTATACAAATG-TTTCATG-CCATAAAA-GAT  1093
       ||||||||| |||||||||||||||||| ||||||| |||||||| |||
seq2  TTATGTTTGGAATACATGGTATACAAATGTTTTCATGCCCATAAAAGGAT  1097

seq1  TAGCTAGTGATC-TACTTTTTTGTCCAC-TAATTTATTATCTATT-ATAC  1140
      |||||||||||| ||||||||||||||| ||||||| |||||||| ||||
seq2  TAGCTAGTGATCTTACTTTTTTGTCCACTTAATTTAATATCTATTAATAC  1147

seq1  TTTTAAACCTCACCAAACAAGAGGAAAAA-TGTGT---AGTGTTAATAAC  1186
      ||||||  |||||  ||| |||||||||| |||||    |||||||||||
seq2  TTTTAA--CTCAC--AAC-AGAGGAAAAAGTGTGTTGAGGTGTTAATAAC  1192

seq1  ---TACAGTTTTC  1196
         ||||| ||||
seq2  CATTACAGATTTC  1205


seq1: chr15_17267534_17268668
seq2: B6Ng01-349K20.g_67_1198 (reverse)

seq1  GATGGCTCAGCAGTAAAGAGCACTAAGTATTCTTGCAGACATCCTT-CAC  49
      |||||||||||||||||||||||||  |||   |||||||||| || |||
seq2  GATGGCTCAGCAGTAAAGAGCACTAGTTAT--CTGCAGACATCTTTCCAC  48

seq1  TC-AATTCCCAGCAACCACACGGTAGCCCACAA-CCATTTGTAATGTGAT  97
      || |||||||||| | |||||||||| |||||| ||||||||||||||||
seq2  TCAAATTCCCAGC-ATCACACGGTAG-CCACAAGCCATTTGTAATGTGAT  96

seq1  CTGATGCTCTTTTCTGGTGTGACTGAAGATAGGA-GCAGTGTATTTACAT  146
      ||||||||| ||||||||||||||| |||||||| |||||||||||||||
seq2  CTGATGCTCCTTTCTGGTGTGACTG-AGATAGGAGGCAGTGTATTTACAT  145

seq1  ACATAAAACAAACAATTCTTAGAAAAACAGCAATGTCACAGTACACTGTG  196
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  ACATAAAACAAAC-ATTCTTAG-AAAACAGCAATGTCACAGTACACTGTG  193

seq1  AAATATATAAAAAATAGATTAGAACTTCGTTCAAGGATTTATCCTGAACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATAAAAAATAGATTAGAACTTCGTTCAAGGATTTATCCTGAACA  243

seq1  CTTTTTAAAGAGAAGTGCTTGCCTGAATAAAATCTCTAGCAGTGAGTTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAGAGAAGTGCTTGCCTGAATAAAATCTCTAGCAGTGAGTTTT  293

seq1  TTTTTTAAGAGTAAAATAAAATTTAACAGTGCTACTCAAATAATGGCTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGAGTAAAATAAAATTTAACAGTGCTACTCAAATAATGGCTTA  343

seq1  GAATATATTCGTTTATTTTCTATAAAGTGACCAATTATAGATAATGATTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATTCGTTTATTTTCTATAAAGTGACCAATTATAGATAATGATTA  393

seq1  GTTTACTTTTATCTTAATCCACCAATATTGTAGGTTTTGTTGGGCAGCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTTTATCTTAATCCACCAATATTGTAGGTTTTGTTGGGCAGCAT  443

seq1  TGAAGTACTCTGCCTACTAAATGTGTTGTTCACCTTAACCCTTTAGTATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTACTCTGCCTACTAAATGTGTTGTTCACCTTAACCCTTTAGTATG  493

seq1  TAATTATATTGTGCTGTTCCTGGAAAAGCAATTTAATTCATCTCTCTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATATTGTGCTGTTCCTGGAAAAGCAATTTAATTCATCTCTCTGTT  543

seq1  GTTCTTTTCAACAAGCTAGTAATTTCCTCTTTCCTTTTGGAGTCAGGGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTCAACAAGCTAGTAATTTCCTCTTTCCTTTTGGAGTCAGGGTT  593

seq1  CTTTTTTCAGAAGCCACAGAATATTTTTAGAAGTTGCAGAAACTGCCTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCAGAAGCCACAGAATATTTTTAGAAGTTGCAGAAACTGCCTCA  643

seq1  GAGAGTGTAAACAAGACAAATTGGTACAGAAATACTTGAAAACTTTCACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTAAACAAGACAAATTGGTACAGAAATACTTGAAAACTTTCACC  693

seq1  ACAGCCACAATTTTCTATAGAATCTGAGGAACATAATCTGTGATGACCAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACAATTTTCTATAGAATCTGAGGAACATAATCTGTGATGACCAC  743

seq1  TCACCCAAACTAATGAGCTAAGAGGCTAGAAGTATATTTTCTGTTGTTAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAAACTAATGAGCTAAGAGGCTAGAAGTATATTTTCTGTTGTTAA  793

seq1  ATAAGAATATATAAATATATGATATAAAATATAAAATATATAATATATTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATATATAAATATATGATATAAAATATAAAATATATAATATATTT  843

seq1  ACATATACAAAAATATATAACACAGAGATATTATATCTAAGAATATGTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACAAAAATATATAACACAGAGATATTATATCTAAGAATATGTAT  893

seq1  ACACACTCAAACATATATACATATCTATATAAATATACAGAGATATATAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCAAACATATATACATATCTATATAAATATACAGAGATATATAG  943

seq1  ATATATATGAAGTATGAAGAGCAATATTAACCTTCTCTTTTCCTTTTTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGAAGTATGAAGAGCAATATTAACCTTCTCTTTTCCTTTTTTC  993

seq1  TACCCAATATTTATCCACATAGCAGTTTCTTCCAAACTGACACATTCATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAATATTTATCCACATAGCAGTTTCTTCCAAACTGACACATTCATT  1043

seq1  TTCTGGTATGAGAATTTGAGTGATAGGAATTTCCATGATATCTCACAGAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTATGAGAATTTGAGTGATAGGAATTTCCATGATATCTCACAGAG  1093

seq1  GATTCCTTAGAATGAAGGAAGATGAGAAAGGAAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTTAGAATGAAGGAAGATGAGAAAGGAAGAATTC  1132


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