BAC Information

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BAC

Clone NameB6Ng01-350H08
Chromosome15 (Build37)
Map Location 21,674,121 - 21,775,905
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12
Downstream geneLOC100040351, EG545091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350H08.bB6Ng01-350H08.g
ACCGA131121GA131122
length1,1411,179
definitionB6Ng01-350H08.b B6Ng01-350H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,674,121 - 21,675,273)(21,774,712 - 21,775,905)
sequence
gaattcaatatggtataaccagttaactcgataggacaggagtgggggct
ttttaggacatcaatatggatgttgcaccttggaaacacaattcatgaaa
atatttgaaaattggtggtgaataatgtggcacagtgaaacaggaagaga
cgttccaatttatgaacacaaatttactctgcaattggaaaacattaaag
attccacaaagctttctgaagaaaatgcctggaattatttatataaactt
gatcaaatgcttaaatgtttagtaacataactttttgttttgttttgttt
ttgttgtttgttttttcttaaattcagatgcaataattttgttaaagttc
ttccacattcttgaaagcatttaaagggcagcaaattaaagttataaaaa
ttcacatgagtgaacaatttgtctaggcattaagaaaataattttacttc
aatggagacaactgtctgcacattatcaagttttagagatccagaaatca
gtggttttaaaggcttttgaaacatgtgcttccaagagtaactattctga
acttatcacattgacaatttccaatccttccataaagcaaagagccaaac
tcaagggaaaaatgtgactgagggaaaagaagatatagagagagacagag
aaagagagagacagagacagagacagagagacagagagacaaatacagag
gcatagaaagagggaaagagaaacaaaatcagaatagagacaaaaacata
gagaaacatagagacagaaacagaaaggcaaaccactgtataaagtcata
tgcaagccatgtataagatgaaaataggaatgatttattgtcaagccctg
ttatggcaagaatttccactaaatcactggagtcaagtagaaccagatta
aattcctcttagatttcagaatatgaccccaaaatttctctttcagactt
tgtgtatttataattatgggatttgtttctttttaatttttattaaggta
ttttctcatttacatttccaatgcttcccaaagtccccatacacccacca
cactcccctaaccacccactctccttttgcactggaatcccctgttactg
gacatataaagtttgcagtcatggcctctctttcagtgatg

gaattcataattagaatcataagcaaatgagatatttaatgtatatatgg
tacattgatagacttcaaattctaataatttagaaacaatttaaaatatt
gcttaattctccttctataacataactgctagtattttgtgaatgaatgt
taaacaatgatgtgcaactacttgactaagtctacatgatttatctacaa
gtaagggaatcaaataaccttgagattcttttaagtaaacggggaaaaat
gtagagatctagcaagataactgtttctttctctccattcattgtggaga
atctaatgagatgggaaagaaaccaacaaactggcaataaaaaaagtagg
actctgatttcacttctcttttaggaagtgtggttgtatctgaagtacca
aggtattctgaaatatacatgaacacattagcttagaatgaatgaaaagt
taaattgaaagattagataatgtatcccaatctaaattgagcataggtta
tagggttttgcattatatattatgtgcctgtaattgagacaaaagaggag
aatgatgttttaaattataaggtgaataaaagatcctatcattagaattc
tcactaggcatgaaatttagaatgaaaagtttcaatatagactttgaaga
agaatcatggagctattaaatcaactaatgtaccactgttgcttttactg
gagcggtgagtcttctctttagaaaaggccaatgtaatgtaatgcattta
aataaaatgttggacttcagagatgggatagtcatcagaataagctagca
taatgatttgttgtatgtatagtgctacaatgattttctataacagcaca
ttttatactatgagatttaagataattgtatagagtcgagatggagttat
acatgttgtactaaagttcataaagattaaagaactacagtagggatttt
gttctcttagatacaggctgtttacataactttgattgcccatttccatt
ttcaattcagtggaagtcaaagggataaagagaatatgaacattatatga
ctctatgcagcatatttattgaagacaggcagcagcatttagaaatacga
tgatatataccattatggttattcaatgagcaattgcaattatgtaggta
tgcattaatagacaaggaaaagcccaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21674121_21675273
seq2: B6Ng01-350H08.b_46_1186

seq1  GAATTCAATATGGTATAACCAGTTAACTCGATAGGACAGGAGTGGGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATGGTATAACCAGTTAACTCGATAGGACAGGAGTGGGGGCT  50

seq1  TTTTAGGACATCAATATGGATGTTGCACCTTGGAAACACAATTCATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGACATCAATATGGATGTTGCACCTTGGAAACACAATTCATGAAA  100

seq1  ATATTTGAAAATTGGTGGTGAATAATGTGGCACAGTGAAACAGGAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAAAATTGGTGGTGAATAATGTGGCACAGTGAAACAGGAAGAGA  150

seq1  CGTTCCAATTTATGAACACAAATTTACTCTGCAATTGGAAAACATTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCAATTTATGAACACAAATTTACTCTGCAATTGGAAAACATTAAAG  200

seq1  ATTCCACAAAGCTTTCTGAAGAAAATGCCTGGAATTATTTATATAAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACAAAGCTTTCTGAAGAAAATGCCTGGAATTATTTATATAAACTT  250

seq1  GATCAAATGCTTAAATGTTTAGTAACATAACTTTTTGTTTTGTTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAATGCTTAAATGTTTAGTAACATAACTTTTTGTTTTGTTTTGTTT  300

seq1  TTGTTGTTTGTTTTTTCTTAAATTCAGATGCAATAATTTTGTTAAAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTTGTTTTTTCTTAAATTCAGATGCAATAATTTTGTTAAAGTTC  350

seq1  TTCCACATTCTTGAAAGCATTTAAAGGGCAGCAAATTAAAGTTATAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATTCTTGAAAGCATTTAAAGGGCAGCAAATTAAAGTTATAAAAA  400

seq1  TTCACATGAGTGAACAATTTGTCTAGGCATTAAGAAAATAATTTTACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGAGTGAACAATTTGTCTAGGCATTAAGAAAATAATTTTACTTC  450

seq1  AATGGAGACAACTGTCTGCACATTATCAAGTTTTAGAGATCCAGAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGACAACTGTCTGCACATTATCAAGTTTTAGAGATCCAGAAATCA  500

seq1  GTGGTTTTAAAGGCTTTTGAAACATGTGCTTCCAAGAGTAACTATTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTAAAGGCTTTTGAAACATGTGCTTCCAAGAGTAACTATTCTGA  550

seq1  ACTTATCACATTGACAATTTCCAATCCTTCCATAAAGCAAAGAGCCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCACATTGACAATTTCCAATCCTTCCATAAAGCAAAGAGCCAAAC  600

seq1  TCAAGGGAAAAATGTGACTGAGGGAAAAGAAGATATAGAGAGAGACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGAAAAATGTGACTGAGGGAAAAGAAGATATAGAGAGAGACAGAG  650

seq1  AAAGAGAGAGACAGAGACAGAGACAGAGAGACAGAGAGACAAATACAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAGACAGAGACAGAGACAGAGAGACAGAGAGACAAATACAGAG  700

seq1  GCATAGAAAGAGGGAAAGAGAAACAAAATCAGAATAGAGACAAAAACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAAAGAGGGAAAGAGAAACAAAATCAGAATAGAGACAAAAACATA  750

seq1  GAGAAACATAGAGACAGAAACAGAAAGGCAAACCACTGTATAAAGTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACATAGAGACAGAAACAGAAAGGCAAACCACTGTATAAAGTCATA  800

seq1  TGCAAGCCATGTATAAGATGAAAATAGGAATGATTTATTGTCAAGCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCCATGTATAAGATGAAAATAGGAATGATTTATTGTCAAGCCCTG  850

seq1  TTATGGCAAGAATTTCCACTAAATCACTGGAGTCAAGTAGAACCAGATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCAAGAATTTCCACTAAATCACTGGAGTCAAGTAGAACCAGATTA  900

seq1  AATTCCTCTTAGATTTCAGAATATGACCCCAAAATTTCTCTTTCAGACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTCTTAGATTTCAGAATATGACCCCAAAATTTCTCTTTCAGACTT  950

seq1  TGTGTATTTATAATTATGGGATTTGTTTCTTTTTAATTTTTATT-AGGTA  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGTATTTATAATTATGGGATTTGTTTCTTTTTAATTTTTATTAAGGTA  1000

seq1  TTTTCCTCATTTACATTTCCAATGCTTCCCAAAAGTCCCCCATACCAACC  1049
      |||| ||||||||||||||||||||||||| ||||| ||||||||  |||
seq2  TTTT-CTCATTTACATTTCCAATGCTTCCC-AAAGT-CCCCATAC--ACC  1045

seq1  CA-CACACTCCCCTAACCACCCACTCTCCCTTTTTGGCACTGGGATTCCC  1098
      || ||||||||||||||||||||||||||   ||| ||||| ||| ||||
seq2  CACCACACTCCCCTAACCACCCACTCTCC---TTTTGCACT-GGAATCCC  1091

seq1  CTG-TACTGGGACATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCA  1147
      ||| |||| ||||||||||||||||| ||||  || ||||||||||| ||
seq2  CTGTTACT-GGACATATAAAGTTTGC-AGTC--AT-GGCCTCTCTTT-CA  1135

seq1  GTGATG  1153
      ||||||
seq2  GTGATG  1141


seq1: chr15_21774712_21775905
seq2: B6Ng01-350H08.g_65_1243 (reverse)

seq1  ATTTTGGCTTTTCTTTG-CTATTTAATGCATACCCTAACATTAAAATTTT  49
      |||| |||||||| ||| ||| ||||||||||||   ||||    | || 
seq2  ATTTGGGCTTTTCCTTGTCTA-TTAATGCATACC--TACAT----AATTG  43

seq1  CATTTTGCTTCAATGA--TACTATATTTGTTATATATCATCCTTATTTCT  97
      ||  |||| ||| |||   || |||  || |||||||||| | |||||||
seq2  CA-ATTGC-TCATTGAATAACCATA-ATGGTATATATCAT-CGTATTTCT  89

seq1  AAAATGCTGCTTCCCTGTCTTCATTAAAATTATGGCTTCCAATAGGAGTC  147
       ||||||||| | |||||||||| ||||  ||| ||| |  ||| |||||
seq2  -AAATGCTGC-TGCCTGTCTTCAATAAA--TAT-GCTGC--ATA-GAGTC  131

seq1  ATATAATGTTCATATTCTCTTTATCCCTTTTGACTTCCACTGAATTGAAA  197
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATATAATGTTCATATTCTCTTTATCCC-TTTGACTTCCACTGAATTGAAA  180

seq1  ATGGAAATGGGCAATCAAAGTTATGTAAACAGCTTGTATCT-AGAGA--C  244
      ||||||||||||||||||||||||||||||||| ||||||| |||||   
seq2  ATGGAAATGGGCAATCAAAGTTATGTAAACAGCCTGTATCTAAGAGAACA  230

seq1  AAATCCCTACTGTAGTTCTTTAATCTTTTATGAACTTTAGTACAACATGT  294
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAATCCCTACTGTAGTTCTTTAATC-TTTATGAACTTTAGTACAACATGT  279

seq1  ATAACTCCATCTCGACTCTATACAATTATCTTAAATCTCATAGTATAAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCCATCTCGACTCTATACAATTATCTTAAATCTCATAGTATAAAA  329

seq1  TGTGCTGTTATAGAAAATCATTGTAGCACTATACATACAACAAATCATTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTTATAGAAAATCATTGTAGCACTATACATACAACAAATCATTA  379

seq1  TGCTAGCTTATTCTGATGACTATCCCATCTCTGAAGTCCAACATTTTATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTTATTCTGATGACTATCCCATCTCTGAAGTCCAACATTTTATT  429

seq1  TAAATGCATTACATTACATTGGCCTTTTCTAAAGAGAAGACTCACCGCTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCATTACATTACATTGGCCTTTTCTAAAGAGAAGACTCACCGCTC  479

seq1  CAGTAAAAGCAACAGTGGTACATTAGTTGATTTAATAGCTCCATGATTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAAGCAACAGTGGTACATTAGTTGATTTAATAGCTCCATGATTCT  529

seq1  TCTTCAAAGTCTATATTGAAACTTTTCATTCTAAATTTCATGCCTAGTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAAGTCTATATTGAAACTTTTCATTCTAAATTTCATGCCTAGTGA  579

seq1  GAATTCTAATGATAGGATCTTTTATTCACCTTATAATTTAAAACATCATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGATAGGATCTTTTATTCACCTTATAATTTAAAACATCATT  629

seq1  CTCCTCTTTTGTCTCAATTACAGGCACATAATATATAATGCAAAACCCTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTTTGTCTCAATTACAGGCACATAATATATAATGCAAAACCCTA  679

seq1  TAACCTATGCTCAATTTAGATTGGGATACATTATCTAATCTTTCAATTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTATGCTCAATTTAGATTGGGATACATTATCTAATCTTTCAATTTA  729

seq1  ACTTTTCATTCATTCTAAGCTAATGTGTTCATGTATATTTCAGAATACCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCATTCATTCTAAGCTAATGTGTTCATGTATATTTCAGAATACCT  779

seq1  TGGTACTTCAGATACAACCACACTTCCTAAAAGAGAAGTGAAATCAGAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTTCAGATACAACCACACTTCCTAAAAGAGAAGTGAAATCAGAGT  829

seq1  CCTACTTTTTTTATTGCCAGTTTGTTGGTTTCTTTCCCATCTCATTAGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTTTTTATTGCCAGTTTGTTGGTTTCTTTCCCATCTCATTAGAT  879

seq1  TCTCCACAATGAATGGAGAGAAAGAAACAGTTATCTTGCTAGATCTCTAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACAATGAATGGAGAGAAAGAAACAGTTATCTTGCTAGATCTCTAC  929

seq1  ATTTTTCCCCGTTTACTTAAAAGAATCTCAAGGTTATTTGATTCCCTTAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCCGTTTACTTAAAAGAATCTCAAGGTTATTTGATTCCCTTAC  979

seq1  TTGTAGATAAATCATGTAGACTTAGTCAAGTAGTTGCACATCATTGTTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATAAATCATGTAGACTTAGTCAAGTAGTTGCACATCATTGTTTA  1029

seq1  ACATTCATTCACAAAATACTAGCAGTTATGTTATAGAAGGAGAATTAAGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATTCACAAAATACTAGCAGTTATGTTATAGAAGGAGAATTAAGC  1079

seq1  AATATTTTAAATTGTTTCTAAATTATTAGAATTTGAAGTCTATCAATGTA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTAAATTGTTTCTAAATTATTAGAATTTGAAGTCTATCAATGTA  1129

seq1  CCATATATACATTAAATATCTCATTTGCTTATGATTCTAATTATGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATATACATTAAATATCTCATTTGCTTATGATTCTAATTATGAATTC  1179


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