BAC Information

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BAC

Clone NameB6Ng01-350K24
Chromosome15 (Build37)
Map Location 32,955,310 - 32,956,490
singlet/doubletsinglet
Overlap geneSdc2
Upstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962
Downstream genePgcp, 1700084J12Rik, Tspyl5, LOC675463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350K24.bB6Ng01-350K24.g
ACCGA131286GA131287
length1,1531,179
definitionB6Ng01-350K24.b B6Ng01-350K24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagcacaaaaaacatctggtcctggacttttgtggttgggagatt
tttaatgactgcttctatttctttagggggttacaggactgtttagatat
tttatctgatcctgacttaactttggtatttggtatacgtctagaaaatt
gtccatttcatccagttgtgttgaatataggcttttgtagtaggatctga
tgatttttgaaatttcctcagtttctgttgttatatctcccttttcagtt
ccgattttgttaatttagacactgttcctgtgccctctgattagtctggc
taaggatttgtatatcttgttgatttttcttaaataacgagctcctggat
ttgttgattctttatatagtttgttttgttttgttttgctttgctttgct
ttgctttgctttgctttgctttgctttgctttgctttgctttgctttgct
ttgctttgctttgctttgctttgctttgttttccaccttgtttgatttca
gccctgagtttgatttcctaccatctactctgcctgggtgtctttgcttc
tttttgttctagagctttcaggtgtgctgttaaactgctagtgtatgctc
tctacagtttctttttggaggcactcagactatgagttttcctctgagca
ctgctttcattttgtcccataagtttggatatgttgtaccttcattttca
ttaaattctaaaaaggtctttaatttcttaaattcttccttgaccaaatt
atcattgagtagagagttgttcagtttccatgtatatgctggctttctgt
tgtttttgttgctattgaaggccagccttaatccatagtgatctgataga
agcaacagaattatttcatctcttgtatctgttgaggtctattttgtgtc
tgatatatggtcagtttggagagtaccatgaaatgctgagagacatatat
ctttgttttaagatgactatctatagatgtccctaatcaatttgtcatag
tctgtactttaactctgtcctgtagttgtgttcctgatctgcattgagac
gagggattgaagtccccactatttgtgatgcatggttcagttagcttagt
aagtcttaagattgagtctgcataggacatattcgatggatcacttgtat
gtt
gaattcatccattcatgggagttctattcagtgtgcatcaaacattgttc
taggtgtccatgatgaagatattgataatgaataacactagcagcaatgt
aattttctgttttatacttatgtggtacggctagattaaaccttgccatt
agagaaaattttgtgttttaataggtcccagagtggcattactgtcatgg
gtatagatagtctatccactgtgttgtacagctatgtgactgaagaatag
aaagagacctttcttcattttgtgaagcctagtttttttcacagcctcta
gaatccagtcatggattcaataaactttcaattggcttcattcaattatg
tgtgctcccttttcataattacacaaagcaccttgaggcttatgtactga
ctgaacactcttctaagtgccatttctgtggagagccttctagatcatca
cttgaattaattcttttgtgtccttattcagaagttgagtcgaagggaac
tgagcaagtcaactcttaaatgactttagggacttaaaatattaacaagt
aaaaccttgtagcttatcttaataataaagataataagcattacataaac
ttggggtcaaagcttcagtatctttctcacttgctagttttcactcacat
ctttccctggatgcaaatgggtatcattccattccttgatttttttcctc
ttccctttgctaatttctaaaagcatagcaaccaaagcaatgctaatgag
caagaaagcatgtgcttccttgatgaggactcaataagccattctgctgc
cctttctgccagataaccagttactgatggcaatcctataagaagaaaat
ggaaagaacctacaaatactgccaacaggcttctctcatctgcattactt
gggcacagcaagacttaaagggaccaaccatgttttctatactcagacag
aaaacagtgaaacttgaatttattatttatacagttataaaaattataat
tatttatagaaatatggcagctttagatttatgaagtataggtttctgta
tcttgggaaaaccttctatcacaatgttatactgtgtttggtggaacctg
ggtgtgtctgatcactaaaagttagtaccaattgtccattgaatctctag
aagttcaagtgaattccacctggcctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32955310_32956490
seq2: B6Ng01-350K24.g_67_1245

seq1  GAATTCATCCATTCATGGGAGTTCTATTCAGTGTGCATCAAACATTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCATTCATGGGAGTTCTATTCAGTGTGCATCAAACATTGTTC  50

seq1  TAGGTGTCCATGATGAAGATATTGATAATGAATAACACTAGCAGCAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTCCATGATGAAGATATTGATAATGAATAACACTAGCAGCAATGT  100

seq1  AATTTTCTGTTTTATACTTATGTGGTACGGCTAGATTAAACCTTGCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTGTTTTATACTTATGTGGTACGGCTAGATTAAACCTTGCCATT  150

seq1  AGAGAAAATTTTGTGTTTTAATAGGTCCCAGAGTGGCATTACTGTCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATTTTGTGTTTTAATAGGTCCCAGAGTGGCATTACTGTCATGG  200

seq1  GTATAGATAGTCTATCCACTGTGTTGTACAGCTATGTGACTGAAGAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATAGTCTATCCACTGTGTTGTACAGCTATGTGACTGAAGAATAG  250

seq1  AAAGAGACCTTTCTTCATTTTGTGAAGCCTAGTTTTTTTCACAGCCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACCTTTCTTCATTTTGTGAAGCCTAGTTTTTTTCACAGCCTCTA  300

seq1  GAATCCAGTCATGGATTCAATAAACTTTCAATTGGCTTCATTCAATTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGTCATGGATTCAATAAACTTTCAATTGGCTTCATTCAATTATG  350

seq1  TGTGCTCCCTTTTCATAATTACACAAAGCACCTTGAGGCTTATGTACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCCTTTTCATAATTACACAAAGCACCTTGAGGCTTATGTACTGA  400

seq1  CTGAACACTCTTCTAAGTGCCATTTCTGTGGAGAGCCTTCTAGATCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACTCTTCTAAGTGCCATTTCTGTGGAGAGCCTTCTAGATCATCA  450

seq1  CTTGAATTAATTCTTTTGTGTCCTTATTCAGAAGTTGAGTCGAAGGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTAATTCTTTTGTGTCCTTATTCAGAAGTTGAGTCGAAGGGAAC  500

seq1  TGAGCAAGTCAACTCTTAAATGACTTTAGGGACTTAAAATATTAACAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGTCAACTCTTAAATGACTTTAGGGACTTAAAATATTAACAAGT  550

seq1  AAAACCTTGTAGCTTATCTTAATAATAAAGATAATAAGCATTACATAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTGTAGCTTATCTTAATAATAAAGATAATAAGCATTACATAAAC  600

seq1  TTGGGGTCAAAGCTTCAGTATCTTTCTCACTTGCTAGTTTTCACTCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTCAAAGCTTCAGTATCTTTCTCACTTGCTAGTTTTCACTCACAT  650

seq1  CTTTCCCTGGATGCAAATGGGTATCATTCCATTCCTTGATTTTTTTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTGGATGCAAATGGGTATCATTCCATTCCTTGATTTTTTTCCTC  700

seq1  TTCCCTTTGCTAATTTCTAAAAGCATAGCAACCAAAGCAATGCTAATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTGCTAATTTCTAAAAGCATAGCAACCAAAGCAATGCTAATGAG  750

seq1  CAAGAAAGCATGTGCTTCCTTGATGAGGACTCAATAAGCCATTCTGCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGCATGTGCTTCCTTGATGAGGACTCAATAAGCCATTCTGCTGC  800

seq1  CCTTTCTGCCAGATAACCAGTTACTGATGGCAATCCTATAAGAAGAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGCCAGATAACCAGTTACTGATGGCAATCCTATAAGAAGAAAAT  850

seq1  GGAAAGAACCTACAAAATACTGCCAACAGGCTTCTCTCATCTGCATTACT  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAACCTAC-AAATACTGCCAACAGGCTTCTCTCATCTGCATTACT  899

seq1  TGGGCACAGCAAGACTTAAA-GGACCAACCATGTTTTCTATACTCAGACA  949
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGGGCACAGCAAGACTTAAAGGGACCAACCATGTTTTCTATACTCAGACA  949

seq1  GAAAACAGTGAAACTTGAATTTA-TATTTATACAGTTATAAAAATTATAA  998
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAAACAGTGAAACTTGAATTTATTATTTATACAGTTATAAAAATTATAA  999

seq1  TTATTTATAGAAAATATGGCAGCTTAAGATTTATGAAGTATAGGGTTTCT  1048
      |||||||||| |||||||||||||| |||||||||||||||| |||||| 
seq2  TTATTTATAG-AAATATGGCAGCTTTAGATTTATGAAGTATA-GGTTTC-  1046

seq1  TGTATCTTGGGAAAAACCTCTATCAC-ATGTTATTACTGTGTTTGGTGGA  1097
      ||||||||||||||| | |||||||| |||||| ||||||||||||||||
seq2  TGTATCTTGGGAAAACCTTCTATCACAATGTTA-TACTGTGTTTGGTGGA  1095

seq1  AACCTTGTGTGTTCTGATCACTAAAAG-TAGTACCAATTGGTTCACATTG  1146
      | |   ||||| ||||||||||||||| ||||||||||||  || |||||
seq2  ACCTGGGTGTG-TCTGATCACTAAAAGTTAGTACCAATTG--TC-CATTG  1141

seq1  -ATCTCTAG-AGTTCAAGTGAA-TCCACCTGGTCTAGA  1181
       |||||||| |||||||||||| ||||||||| |||||
seq2  AATCTCTAGAAGTTCAAGTGAATTCCACCTGGCCTAGA  1179