BAC Information

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BAC

Clone NameB6Ng01-350N14
Chromosome15 (Build37)
Map Location 50,897,945 - 51,082,485
singlet/doubletdoublet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350N14.bB6Ng01-350N14.g
ACCGA131399GA131400
length1,155978
definitionB6Ng01-350N14.b B6Ng01-350N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,080,944 - 51,082,485)(50,897,945 - 50,898,915)
sequence
gaattcactgcaaccaagtataaggtatgagtccttttgcatgcttcctg
tattcccagaaaccttacttaaaaggtcttgtttcaaagctggtgattgg
tttgagctgtgctgtgttaactgggtccccattcctccaagccatgtcgt
tggagggaaaaatctctgtggtcttgtgatcatcattttatttgatgcca
aattgccatggtaggataaaatttaacttaacgaaactctttttttttta
tatgagaacttattttgaacctttttctccatccacttggagatgtttat
ctttcaatagcctataaaataaacaggcccatggctaaaaatgatcaaca
tgattgtgtcttgtgattcttcacgatgagcacagactgttgggcccctg
ttggttactttcctcagtatgagtgtctctatgtgacactcaccaggggc
catgccttagaatcctctcactggaaaatgagtggtagatcttatggagt
tatagagatttctctgtttgtttgtttgtttgtttgtttctcctctcatg
tagacaaagatggtaagagaaatctgtgacatttgattttattatttttg
catgttggcatgtttagaggagggtgacatataaacagtagaaactcgtg
gatgtggaggtgtgcagggccacatggaaactaggggtgacattaaatgt
attattcttaccttcgcctttatttcttggtggcagtggctataactgaa
ctagacattaaccatttaggtgaggctggacagtccagcctgctccctgg
acccaccttcatttctttcaacactggttttactggtggatgcaatcctg
aagatatagagttgaactgaggttctgaagcttccatggcaattgctgtt
agcatctgcactgttttgaggtaaagaaaatattccatgattaagcagta
acattttctttcccagcgaagtctgaaatcattcagaagaactgggcaga
aagcagagaccatctcagagttaattctgattttaagcaacattgtagaa
aaagtttcttatgcatctaagtcagtggtctccaacctacacttgacctt
tagatgcagttccttatgttaagtgacccccattcctaagttatttccat
tgctg

gaattcctcatttctatgtcatcatgagaaaaaggaacatagcagaatca
atccttccctttatcagtaaataaattagtgaagagacataaatatacat
ataagtagaggttaatatgtttatattatatatttatatataatatttac
atatatttttaatgtttatattttttattaaatctaggctccttgagact
catgagttgtctacacacttgaatgggcgctgagagaagtgccctggatt
ctgtcttcaaatgatccagttcccttcctctctgcatggacaccatttct
ggttgcgcggcctagcctcacaggctccatcatgtcaggtttcctgcggc
ctacacttcagacatttcctgccagaacctgcacacctgaaaacaaaggg
gctagctcttagctttctatctcactggacttgtgcaatcatgaagccac
aaacatacaccattctggtaattaagagacatgtaaagaaagtagggtac
aaaatgaactaacctattaaaaataaccactaaccaaccatataagcaac
atatgatttggggagtaactaataagctgttaacacgcatacacacacac
acacacacacacacacacacacacacacacatataggtataggtataggt
ataggtataggtataggtataggtataggtataggtatagggaaacatat
agtgaggtagctatttgtctagttgaaatgagtacaaatatgcactcagt
ttgccaggtccagaacacagacaatagtaagaaaaacatcttacaacttg
ccttgccaaggtctgaaatggccctgatcttaacattggtaattacctcc
agtattttccgggggttggacttagaaggtaatctgaaaatgacaccaac
tgagtttttaccttgccaggccaacataaaaattgataagaaagaggaag
aaaagaaccctgaatatgactatgatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_51080944_51082485
seq2: B6Ng01-350N14.b_50_1204 (reverse)

seq1  CAGCAATGGGAGCAGTAAGTCCTTGCTACCCACGAAACTTCCCATTAAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTCACCTTACCCTGTGCCTTTCTTCACTCTTACTCTCAAGTGAAGGAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAAATCATCAGTTAAGTAGATTGTGTAAGACAAATTGGGTTCCCAAGGCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTGCTCCTCCTGAGGTTTTGGGTCTACTTAGCAGCAAAGAAGAATCCAGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTACCATTCCATGTTGGAAGATGCCCATCTATGTTGAAAACTTCAATTTA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGGTATCTGTCTACCATAGTGATTACCAAATACGTGTAGCTCAGTAGTTC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TGAACCTGCATGTCGAGACTCCTTTAGTAAACTTCTCTTTTCAAAAATAT  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTACGTAACTATTCATAATGGAAGCAAAATTACAGCAATGAAAATAACTT  400
                                      |||||||| ||||||| |
seq2  --------------------------------CAGCAATGGAAATAAC-T  17

seq1  TAGGATTGGGGGTCACTATAACATAAGGAACTGCATTCTAAGGTCAAAGT  450
      ||||| ||||||||||| ||||||||||||||||||   |||||| ||||
seq2  TAGGAATGGGGGTCACT-TAACATAAGGAACTGCATCTAAAGGTC-AAGT  65

seq1  GTTAAGGTTGAGAACCACTGACTTAGATGCATAAGAAACCTTTTCTACAA  500
      ||  ||||||   |||||||||||||||||||||||||| ||||||||||
seq2  GT--AGGTTGGAGACCACTGACTTAGATGCATAAGAAACTTTTTCTACAA  113

seq1  TGTTGCTTAAAATCAGAATTAACTCTGAGATGGTCTCTGCTTTCTGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTAAAATCAGAATTAACTCTGAGATGGTCTCTGCTTTCTGCCCA  163

seq1  GTTCTTCTGAATGATTTCAGACTTCGCTGGGAAAG-AAATGTTACTGCTT  599
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTCTTCTGAATGATTTCAGACTTCGCTGGGAAAGAAAATGTTACTGCTT  213

seq1  AATCATGGAATATTTTCTTTTACCTCAAAACAGTGCAGATGCTAACAGCA  649
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATCATGGAATATTTTC-TTTACCTCAAAACAGTGCAGATGCTAACAGCA  262

seq1  ATTGCCATGGAAGCTTCAGAACCTCAGTTCAACTCTATATCTTCAGGATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCATGGAAGCTTCAGAACCTCAGTTCAACTCTATATCTTCAGGATT  312

seq1  GCATCCACCAGTAAAACCAGTGTTGAAAGAAATGAAGGTGGGTCCAGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCACCAGTAAAACCAGTGTTGAAAGAAATGAAGGTGGGTCCAGGGA  362

seq1  GCAGGCTGGACTGTCCAGCCTCACCTAAATGGTTAATGTCTAGTTCAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTGGACTGTCCAGCCTCACCTAAATGGTTAATGTCTAGTTCAGTT  412

seq1  ATAGCCACTGCCACCAAGAAATAAAGGCGAAGGTAAGAATAATACATTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCACTGCCACCAAGAAATAAAGGCGAAGGTAAGAATAATACATTTA  462

seq1  ATGTCACCCCTAGTTTCCATGTGGCCCTGCACACCTCCACATCCACGAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACCCCTAGTTTCCATGTGGCCCTGCACACCTCCACATCCACGAGT  512

seq1  TTCTACTGTTTATATGTCACCCTCCTCTAAACATGCCAACATGCAAAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGTTTATATGTCACCCTCCTCTAAACATGCCAACATGCAAAAAT  562

seq1  AATAAAATCAAATGTCACAGATTTCTCTTACCATCTTTGTCTACATGAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCAAATGTCACAGATTTCTCTTACCATCTTTGTCTACATGAGA  612

seq1  GGAGAAACAAACAAACAAACAAACAAACAGAGAAATCTCTATAACTCCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACAAACAAACAAACAAACAAACAGAGAAATCTCTATAACTCCAT  662

seq1  AAGATCTACCACTCATTTTCCAGTGAGAGGATTCTAAGGCATGGCCCCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTACCACTCATTTTCCAGTGAGAGGATTCTAAGGCATGGCCCCTG  712

seq1  GTGAGTGTCACATAGAGACACTCATACTGAGGAAAGTAACCAACAGGGGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTCACATAGAGACACTCATACTGAGGAAAGTAACCAACAGGGGC  762

seq1  CCAACAGTCTGTGCTCATCGTGAAGAATCACAAGACACAATCATGTTGAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGTCTGTGCTCATCGTGAAGAATCACAAGACACAATCATGTTGAT  812

seq1  CATTTTTAGCCATGGGCCTGTTTATTTTATAGGCTATTGAAAGATAAACA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAGCCATGGGCCTGTTTATTTTATAGGCTATTGAAAGATAAACA  862

seq1  TCTCCAAGTGGATGGAGAAAAAGGTTCAAAATAAGTTCTCATATAAAAAA  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGTGGATGGAGAAAAAGGTTCAAAATAAGTTCTCATATAAAAAA  912

seq1  AAAAGAGTTTCGTTAAGTTAAATTTTATCCTACCATGGCAATTTGGCATC  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTTTCGTTAAGTTAAATTTTATCCTACCATGGCAATTTGGCATC  962

seq1  AAATAAAATGATGATCACAAGACCACAGAGATTTTTCCCTCCAACGACAT  1399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATGATGATCACAAGACCACAGAGATTTTTCCCTCCAACGACAT  1012

seq1  GGCTTGGAGGAATGGGGACCCAGTTAACACAGCACAGCTCAAACCAATCA  1449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGAGGAATGGGGACCCAGTTAACACAGCACAGCTCAAACCAATCA  1062

seq1  CCAGCTTTGAAACAAGACCTTTTAAGTAAGGTTTCTGGGAATACAGGAAG  1499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTGAAACAAGACCTTTTAAGTAAGGTTTCTGGGAATACAGGAAG  1112

seq1  CATGCAAAAGGACTCATACCTTATACTTGGTTGCAGTGAATTC  1542
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAAGGACTCATACCTTATACTTGGTTGCAGTGAATTC  1155


seq1: chr15_50897945_50898915
seq2: B6Ng01-350N14.g_67_1044

seq1  GAATTCCTCATTTCTATGTCATCATGAGAAAAAGGAACATAGCAGAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATTTCTATGTCATCATGAGAAAAAGGAACATAGCAGAATCA  50

seq1  ATCCTTCCCTTTATCAGTAAATAAATTAGTGAAGAGACATAAATATACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCCTTTATCAGTAAATAAATTAGTGAAGAGACATAAATATACAT  100

seq1  ATAAGTAGAGGTTAATATGTTTATATTATATATTTATATATAATATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGAGGTTAATATGTTTATATTATATATTTATATATAATATTTAC  150

seq1  ATATATTTTTAATGTTTATATTTTTTATTAAATCTAGGCTCCTTGAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTTAATGTTTATATTTTTTATTAAATCTAGGCTCCTTGAGACT  200

seq1  CATGAGTTGTCTACACACTTGAATGGGCGCTGAGAGAAGTGCCCTGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTGTCTACACACTTGAATGGGCGCTGAGAGAAGTGCCCTGGATT  250

seq1  CTGTCTTCAAATGATCCAGTTCCCTTCCTCTCTGCATGGACACCATTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCAAATGATCCAGTTCCCTTCCTCTCTGCATGGACACCATTTCT  300

seq1  GGTTGCGCGGCCTAGCCTCACAGGCTCCATCATGTCAGGTTTCCTGCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCGCGGCCTAGCCTCACAGGCTCCATCATGTCAGGTTTCCTGCGGC  350

seq1  CTACACTTCAGACATTTCCTGCCAGAACCTGCACACCTGAAAACAAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTCAGACATTTCCTGCCAGAACCTGCACACCTGAAAACAAAGGG  400

seq1  GCTAGCTCTTAGCTTTCTATCTCACTGGACTTGTGCAATCATGAAGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTCTTAGCTTTCTATCTCACTGGACTTGTGCAATCATGAAGCCAC  450

seq1  AAACATACACCATTCTGGTAATTAAGAGACATGTAAAGAAAGTAGGGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACACCATTCTGGTAATTAAGAGACATGTAAAGAAAGTAGGGTAC  500

seq1  AAAATGAACTAACCTATTAAAAATAACCACTAACCAACCATATAAGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACTAACCTATTAAAAATAACCACTAACCAACCATATAAGCAAC  550

seq1  ATATGATTTGGGGAGTAACTAATAAGCTGTTAACACGCATACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTTGGGGAGTAACTAATAAGCTGTTAACACGCATACACACACAC  600

seq1  ACACACACACACACACACACACACACACACATATAGGTATAGGTATAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACATATAGGTATAGGTATAGGT  650

seq1  ATAGGTATAGGTATAGGTATAGGTATAGGTATAGGTATAGGGAAACATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTATAGGTATAGGTATAGGTATAGGTATAGGTATAGGGAAACATAT  700

seq1  AGTGAGGTAGCTATTTGTCTAGTTGAAATGAGTACAAATATGCACTCAG-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTGAGGTAGCTATTTGTCTAGTTGAAATGAGTACAAATATGCACTCAGT  750

seq1  TTGCCAGGTCCAGAACACAGACAATAGTAAG-AAAACATCTTAC-ACTTG  797
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TTGCCAGGTCCAGAACACAGACAATAGTAAGAAAAACATCTTACAACTTG  800

seq1  CC-TGCCCAGGTCTG-AATGGCCCTGATCTTAACATTGTTAATTA-CTCC  844
      || |||| ||||||| |||||||||||||||||||||| |||||| ||||
seq2  CCTTGCCAAGGTCTGAAATGGCCCTGATCTTAACATTGGTAATTACCTCC  850

seq1  AGTA-TTTCCGTGGGCTGGACTTTAGAAGGTAGTCTGAAAA-GACACCAA  892
      |||| |||||| ||| ||||| |||||||||| |||||||| ||||||||
seq2  AGTATTTTCCGGGGGTTGGAC-TTAGAAGGTAATCTGAAAATGACACCAA  899

seq1  GTGAGTTTTTACCTTGCCAGGCAAACAATTAAAAATGAAGAGAAAGAGGA  942
       ||||||||||||||||||||| ||| || |||| |||  ||||||||||
seq2  CTGAGTTTTTACCTTGCCAGGCCAAC-ATAAAAATTGATAAGAAAGAGGA  948

seq1  AGAAAAG-ACCCTGAAGATGACTATGATCT  971
      ||||||| |||||||| |||||||||||||
seq2  AGAAAAGAACCCTGAATATGACTATGATCT  978


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