BAC Information

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BAC

Clone NameMSMg01-045H23
Chromosome15 (Build37)
Map Location 81,380,613 - 81,381,149
singlet/doubletsinglet
Overlap genenone
Upstream geneEnthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080
Downstream geneEp300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045H23.T7 (MSMg01no045_h23.b1)MSMg01-045H23.TJ (MSMg01no045_h23.g1)
ACCAG276117AG276118
length710700
length of high quality
(start - end)
373 (43 - 415)629 (72 - 700)
definitionCHROMAT_FILE: MSMg01no045_h23.b1 PHD_FILE: MSMg01no045_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:28 2005CHROMAT_FILE: MSMg01no045_h23.g1 PHD_FILE: MSMg01no045_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCATCACGTGTCCTTTCATGTGCTTGCATTCGCAGAACATCCTTTCA
CTTGTGTCTGCTTCAGGGAAACATTCCTTCACGTTTGTCCCAGCAAAACA
CCATCCAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGATC
TTCCAAAGGTCCCCAGTTCAAATCCCAGCAACCACATAGTGGCTCACAAC
CATCTGTAATGAGATCTGACACCCTCTTCTGGTGTGTCTGAAGACAACTA
CAGTGTACTTACATATTAAAAAAAAAAAATCCAAATAACTTTCCAAAGAA
CCCTTAAGTTTCTAGTTCACAGGTCTTCTATTGTTTTGTTTTGTGGTGTT
TGTTTGTTTGTTTCCCCCCCNANATGTTATCTTATAACTTCTTATACAGA
ATCTATACTACGACCATCTTTGTCTGGTAACATGGTGGCCTGCTTGATAT
CTGGCATACTAGCTGAAGACCTTATCTATGACCCATTCGGACATGGCTTC
CGTTATATTTATCTGCTATTGGTACGGTCCCCTAGATATCTTATTCTCCT
CTATTCATATTTTCTTGTCTACCACCCCTACTGCGTTTGATTTCCTTTTT
GCTATTACAATTCTTCCTTTTTTTTCTCTCCTCTCTTCTCTTTTTTATGT
ATTTATTTTG
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTCTTTAGTCAATTGTCAAGGACCAGCT
TGACATCACAGGGTAAACCAAGATAGGGTATAGAGTCTGGTGATCAGGGC
CAAAAGCTGCTTCCTTTTGGCCATTTAATCTCTCTTGTTATTCTGGGGCC
AAAAAACTACCAGCTTCTGGCTAGTTAGCTCTTTCTTGCAATGCAGGGCC
AAAACCTGACAGCAGAGAAAAAGAAACTTGGTTACCTGACTAATTTTCTC
TTTGACTCAGGCCTCTGGCTGGCCAGGTGAGAGGCTTGGAATTACTTAAC
TCTCAGTAAGAGAGAGAGAAAAGAAAAGAAAGGAAGAAAGAAAGACACAC
ATAGACAACATGCATACTGGAGGAAGCTGAGGAGGTCTGCACTACCATTT
TACTTTTGTTCTTAGTTTTTATGCTTTTTCAGAATAATTGATCACATGGG
TTTCTAAGCATTTTTCTAAGTTCATGGTAAGTTTAAAGCAACAGTTCATG
TTATAGATTGAAAAGACTTAAGGAGGTACAGCATTATTGTTTATATGTCT
TTCCATTAAGACTAGTACCTACCTGGGCTGGTGAGATGGCTCAGTGGGTA
AGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCANATCCCAGCAACC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_h23.g1 MSMg01no045_h23.g1 CHROMAT_FILE:
MSMg01no045_h23.g1 PHD_FILE: MSMg01no045_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:28 2005
         (629 letters)



>mm_chr15_81380121_81381149
          Length = 1029

 Score =  911 bits (471), Expect = 0.0
 Identities = 515/537 (95%), Gaps = 12/537 (2%)
 Strand = Plus / Minus

                                                                        
Query: 29   ttgacatcacagggtaaaccaagatagggtatagagtctggtgatcagggccaaaagctg 88
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 1029 ttgacatcacagggtaaaccaaggtagggtatagagtctgatgatcagggccaaaagctg 970

                                                                        
Query: 89   cttccttttggccatttaatctctcttgttattctggggccaaaaaactaccagcttctg 148
            |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 969  cttccttttggctatttaatctctcttgttattctggggccaaaaaactaccggcttctg 910

                                                                        
Query: 149  gctagttagctctttcttgcaatgcagggccaaaacctgacagcagagaaaaagaaactt 208
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 909  gctagttagctctttcttgcaatgcagggccaaaacctgatagcagagaaaaagaaactt 850

                                                                        
Query: 209  ggttacctgactaattttctctttgactcaggcctctggctggccaggtgagaggcttgg 268
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  ggttacctgactatttttctctttgactcaggcctctggctggccaggtgagaggcttgg 790

                                                                        
Query: 269  aattacttaactctcagtaagagagagagaaaagaaaagaaaggaagaaagaaagacaca 328
            |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 789  aatttcttaactctcagtaagacagagagaaaagaaaagaaaggaagaaagaaagacaca 730

                                                                        
Query: 329  catagacaacatgcatactggaggaagctgaggaggtctgcactaccattttacttttgt 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  catagacaacatgcatactggaggaagctgaggaggtctgcactaccattttacttttgt 670

                                                                        
Query: 389  tcttagtttttatgctttttcagaataattgatcacatgggtttctaagcatttttctaa 448
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  tcttagttttcatgctttttcagaataattgatcacatgggtttctaagcatttttctaa 610

                                                                        
Query: 449  gttcatggtaagtttaaagcaacagttcatgttatagattgaaaagacttaaggaggtac 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  gttcatggtaagtttaaagcaacagttcatgttatagattgaaaagacttaaggaggtac 550

                                                                     
Query: 509  agcattattgtttata------------tgtctttccattaagactagtacctacct 553
            ||||||||||||||||            ||||||||||||| |||||||||||||||
Sbjct: 549  agcattattgtttatataattatataattgtctttccattatgactagtacctacct 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)