Query= MSMg01no045_n05.b1 MSMg01no045_n05.b1 CHROMAT_FILE:
MSMg01no045_n05.b1 PHD_FILE: MSMg01no045_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:52 2005
(650 letters)
>mm_chr15_20232209_20233258
Length = 1050
Score = 1172 bits (606), Expect = 0.0
Identities = 636/646 (98%), Gaps = 2/646 (0%)
Strand = Plus / Plus
Query: 6 ggaattcctcatatacctgatgcttctgacaa-gtttcatgtgattgcgggtgggggaag 64
||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 204 ggaattcctcataaagttgatgcttctgacaaagtttcatgtgattgggggtgggggaag 263
Query: 65 tgtagcagtgcacagagtctttgactctcctttcttcca-taatactcaattctgtcttc 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 tgtagcagtgcacagagtctttgactctcctttcttccaataatactcaattctgtcttc 323
Query: 124 aaattcctcaaacacatcaagttctgtctgatgatgattagtaatgaaactatttggaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaattcctcaaacacatcaagttctgtctgatgatgattagtaatgaaactatttggaaa 383
Query: 184 tatttatttgactgatatttacaattttgtttgcacaactgctgctgctttgatttcagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttatttgactgatatttacaattttgtttgcacaactgctgctgctttgatttcagg 443
Query: 244 tttggtgtctgcatgtaggatggatccccatgtggggcagtccccttttattaactaata 303
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttggtatctgcatgtaggatggatccccatgtggggcagtccccttttattaactaata 503
Query: 304 aatttaaaaagcatgtagaaagaaatcttgaagacacatggcaactctctctttgatttg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatttaaaaagcatgtagaaagaaatcttgaagacacatggcaactctctctttgatttg 563
Query: 364 cttttcctggtaaagaaaattttgcagactcacaaaattgatacacttaatacagggatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttttcctggtaaagaaaattttgcagactcacaaaattgatacacttaatacagggatt 623
Query: 424 agaaggtatagatagatgaacaccatttaggctgaacgcttaattgctatctcccttttt 483
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 agaaggtatagatagatgaacaccattcaggctgaacgcttaattgctatctcccttttt 683
Query: 484 gtttactttatctgttcattagagatgatgtctttatattttgaggctggcagaatgcac 543
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtttacgttatctgttcattagagatgatgtctttatattttgaggctggcagaatgcac 743
Query: 544 aaacttggagtatataaatctagggtctttatcctgccttcaaattaatatgtctttttt 603
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 744 aaacttggagtatataaatctagggtctttatcctgccttaaaattaatatgtctttttt 803
Query: 604 gttaacctgagtatttttatgtgaaaagtaaaataatattatatac 649
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gttaacctgagtatttttatgtgaaaagtaaaataatattatatac 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_n05.g1 MSMg01no045_n05.g1 CHROMAT_FILE:
MSMg01no045_n05.g1 PHD_FILE: MSMg01no045_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:52 2005
(564 letters)
>mm_chr15_20391646_20392608
Length = 963
Score = 1067 bits (552), Expect = 0.0
Identities = 561/564 (99%), Gaps = 1/564 (0%)
Strand = Plus / Minus
Query: 1 aatttggacatgtaggtttgagatgcccatccgaaacctaatttatatgcctagtaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 aatttggacatgtaggtttgagatgcccatccgaaacctaatttatatgcctagtaaagc 903
Query: 61 acatggatagagattaaatttgggtaaatcagagattggagatgcatattttggagtttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 acatggatagagattaaatttgggtaaatcagagattggagatgcatattttggagtttt 843
Query: 121 cagcatatggtgtctaaaattatgaacttgggtgagatcactttgggtgtgggtgtagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 cagcatatggtgtctaaaattatgaacttgggtgagatcactttgggtgtgggtgtagat 783
Query: 181 ggagataaacaggagctcctgcaataacgtgagaagaatctagaaaagactatatggtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ggagataaacaggagctcctgcaataacgtgagaagaatctagaaaagactatatggtgg 723
Query: 241 ttcagttatgaggtgttggtgtgaaacgttgtctctggaagtaaaagttcactgaatagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ttcagttatgaggtgttggtgtgaaacgttgtctctggaagtaaaagttcactgaatagg 663
Query: 301 aacagaaatgaacactttgacctatgaacattcaggtgtaacaaatttgattttctctta 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 662 aacagaaatgaacactttgacctatgaacattcaggtgtaacaaatttgattttttctta 603
Query: 361 tcacgaagttgcattgaatttataatgaaatctgaaagtgtagttaaaaataataattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tcacgaagttgcattgaatttataatgaaatctgaaagtgtagttaaaaataataattat 543
Query: 421 ttagacaactaaagagcatcaggtgacagcagttaaaaagcctgagcaggttatatttgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttagacaactaaagagcatcaggtgacagcagttaaaaagcctgagcaggttatatttgg 483
Query: 481 gtggaaaagttcctaaaatatcatgtaataaactagtactatgtggaggcctaaataaag 540
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 482 g-ggaaaagttcctaaaatatcatgtaatgaactagtactatgtggaggcctaaataaag 424
Query: 541 ctcttattagtcatttcttggatt 564
||||||||||||||||||||||||
Sbjct: 423 ctcttattagtcatttcttggatt 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
