Query= MSMg01no047_e05.b1 MSMg01no047_e05.b1 CHROMAT_FILE:
MSMg01no047_e05.b1 PHD_FILE: MSMg01no047_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:34 2005
(505 letters)
>mm_chr15_92349997_92350902
Length = 906
Score = 949 bits (491), Expect = 0.0
Identities = 497/499 (99%), Gaps = 1/499 (0%)
Strand = Plus / Minus
Query: 5 gaattcatcgtttatacatttttgcctctgttcagagattgttcgtaaagggcaaaatca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaattcatcgtttatacatttttgcctctgttcagagattgttcgtaaagggcaaaatca 644
Query: 65 taagctgaaaactgtgacccagatctgtagaagagcatgcaagcctttcatgcaactgaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 taagctgaaaactgtgacccagatctgtagaagagcatgcaagcctttcatgcaactgaa 584
Query: 125 gatggcacagtgcacggggataagccagaggagctctgcattaaagccaggcaaagacct 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gatggcacagtgcacagggataagccagaggagctctgcattaaagccaggcaaagacct 524
Query: 185 atggaacactcttccaaagtccttaacatagtgtgcatgaaagagccttcacatgcatca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atggaacactcttccaaagtccttaacatagtgtgcatgaaagagccttcacatgcatca 464
Query: 245 taatgcatcgacacacatatgcacatttgcatgcatacttacatctagatagtaaggact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 taatgcatcgacacacatatgcacatttgcatgcatacttacatctagatagtaaggact 404
Query: 305 gtgtatttttttctgtgagataataga-tttttttttttgtcttgtagttttattttctt 363
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 403 gtgtatttttttctgtgagataatagattttttttttttgtcttgtagttttattttctt 344
Query: 364 gacacggctatagtcagttacaaggtcttgtagctaaatgttgatgaagctccttttaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gacacggctatagtcagttacaaggtcttgtagctaaatgttgatgaagctccttttaat 284
Query: 424 tttccactaacatgacaattaggctttattaaacttatgaaaaatatacaacaggtagtt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttccactaacatgacaattaggctttattaaacttatgaaaaatatacaacaggtagtt 224
Query: 484 ggggatgttttgttttgtc 502
|||||||||||||||||||
Sbjct: 223 ggggatgttttgttttgtc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 906
Length adjustment: 10
Effective length of query: 495
Effective length of database: 896
Effective search space: 443520
Effective search space used: 443520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_e05.g1 MSMg01no047_e05.g1 CHROMAT_FILE:
MSMg01no047_e05.g1 PHD_FILE: MSMg01no047_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:34 2005
(462 letters)
>mm_chr15_92234391_92235254
Length = 864
Score = 712 bits (368), Expect = 0.0
Identities = 433/464 (93%), Gaps = 17/464 (3%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgta-ccccatttttaatagggctatttgattgtctggagtctaattt 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tttgtttagctctgtaaccccatttttaatagggctatttgattgtctggagtctaattt 273
Query: 60 cttgagttttttgtatatatcggatattagccctctatcagatgtaggatgagtaaagat 119
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 274 cttgagttttttgtatatattggatattagccctctatcagatgtaggattagtaaagat 333
Query: 120 cttttccccatctgttggctgccattttgcagatctgaattctgtcctcagcacatatta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 334 cttttccccatctgttggctgccattttgcagatctgaattctgtcctcagcacacatta 393
Query: 180 tcaggtggctcacaaccactatgactctatatcctggatgatctgacccctctggcttct 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcaggtggctcacaaccactaagactctatatcctggatgatctgacccctctggcttct 453
Query: 240 atggcaccccaacacacatgtgccattcattcacacacacacacacacacacacacacac 299
||||| ||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 454 gtggcatcccaacacacatgtggcat--------------acacacacacacacacacac 499
Query: 300 acacacacacacacacacacacacacaaatatgtcttccccaaaaaatcagggtttgtgt 359
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 500 acacacacacacacacacacacacacaaatatgtcttcccccaaaaagcagggtttgtgt 559
Query: 360 ttattgtgtatattttttaaaacacttatttaaggttgggggtgtgactagctggtacac 419
|||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 560 ttattgcgtatacttttaaaaacacttatttaaggttgggagtgtgactagctggtacac 619
Query: 420 tatttggcgtgtgtg--cttaaggtcaggggttccatctccagc 461
||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 620 tatttggcgtgtgtgtgcttgaggtcaggggttccatctccagc 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 864
Length adjustment: 10
Effective length of query: 452
Effective length of database: 854
Effective search space: 386008
Effective search space used: 386008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
